We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR83 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
5.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
4.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
2.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
2.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
1.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WDR83 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.0
Number of samples
231
Samples
Sample
Description
TPM
DO45149
0 years, female, NA, stage:2, alive, 1260 days
54.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
32.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
32.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
29.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
29.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
27.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
26.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
26.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
23.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
22.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
21.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
21.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
21.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
20.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
19.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
18.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
18.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
17.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
17.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
16.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
12.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
11.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
9.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
0.9
425
Tumor
0.8
563
Tumor
0.8
695
Tumor
0.7
671
Tumor
0.7
534
Normal
0.7
967
Tumor
0.7
285
Tumor
0.6
517
Tumor
0.6
487
Tumor
0.6
571
Tumor
0.6
443
Tumor
0.6
666
Normal
0.6
497
Tumor
0.6
332
Normal
0.6
331
Tumor
0.5
635
Tumor
0.5
564
Normal
0.5
277
Tumor
0.5
977
Tumor
0.5
558
Normal
0.5
574
Normal
0.5
865
Tumor
0.5
431
Tumor
0.5
921
Tumor
0.4
211
Tumor
0.4
557
Tumor
0.4
1021
Tumor
0.4
573
Tumor
0.4
341
Tumor
0.4
528
Normal
0.4
554
Normal
0.4
192
Normal
0.4
314
Normal
0.4
546
Normal
0.4
465
Tumor
0.4
271
Tumor
0.3
647
Tumor
0.3
393
Tumor
0.3
221
Tumor
0.3
553
Tumor
0.3
227
Tumor
0.3
313
Tumor
0.3
814
Normal
0.3
297
Tumor
0.3
161
Tumor
0.3
213
Tumor
0.3
128
Normal
0.3
648
Normal
0.3
665
Tumor
0.3
356
Normal
0.3
662
Normal
0.2
672
Normal
0.2
223
Tumor
0.2
383
Tumor
0.2
428
Normal
0.2
965
Tumor
0.2
975
Tumor
0.2
722
Normal
0.2
171
Tumor
0.2
395
Tumor
0.2
568
Normal
0.2
615
Tumor
0.2
1027
Tumor
0.2
217
Tumor
0.2
664
Normal
0.2
951
Tumor
0.2
917
Tumor
0.2
445
Tumor
0.2
191
Tumor
0.2
953
Tumor
0.2
351
Tumor
0.2
955
Tumor
0.2
738
Normal
0.2
396
Normal
0.2
1031
Tumor
0.2
391
Tumor
0.2
741
Tumor
0.2
432
Normal
0.2
124
Normal
0.2
483
Tumor
0.2
956
Normal
0.2
663
Tumor
0.2
491
Tumor
0.2
414
Normal
0.2
661
Tumor
0.2
423
Tumor
0.2
1041
Tumor
0.1
867
Tumor
0.1
813
Tumor
0.1
387
Tumor
0.1
394
Normal
0.1
943
Tumor
0.1
473
Tumor
0.1
937
Tumor
0.1
367
Tumor
0.1
493
Tumor
0.1
298
Normal
0.1
196
Normal
0.1
742
Normal
0.1
484
Normal
0.1
283
Tumor
0.1
357
Tumor
0.1
312
Normal
0.1
278
Normal
0.1
463
Tumor
0.1
388
Normal
0.1
113
Tumor
0.1
415
Tumor
0.1
375
Tumor
0.1
745
Tumor
0.1
964
Normal
0.1
743
Tumor
0.1
185
Tumor
0.1
727
Tumor
0.1
186
Normal
0.1
195
Tumor
0.1
815
Tumor
0.1
232
Normal
0.1
162
Normal
0.1
533
Tumor
0.1
696
Normal
0.1
744
Normal
0.1
172
Normal
0.1
451
Tumor
0.1
618
Normal
0.1
353
Tumor
0.1
537
Tumor
0.1
523
Tumor
0.1
268
Normal
0.1
756
Normal
0.1
385
Tumor
0.1
355
Tumor
0.1
851
Tumor
0.1
642
Normal
0.1
714
Normal
0.1
447
Tumor
0.1
877
Tumor
0.1
883
Tumor
0.1
427
Tumor
0.1
952
Normal
0.0
817
Tumor
0.0
873
Tumor
0.0
923
Tumor
0.0
456
Normal
0.0
963
Tumor
0.0
755
Tumor
0.0
126
Normal
0.0
311
Tumor
0.0
424
Normal
0.0
498
Normal
0.0
981
Tumor
0.0
231
Tumor
0.0
913
Tumor
0.0
364
Normal
0.0
466
Normal
0.0
723
Tumor
0.0
627
Tumor
0.0
435
Tumor
0.0
147
Tumor
0.0
1025
Tumor
0.0
881
Tumor
0.0
267
Tumor
0.0
515
Tumor
0.0
976
Normal
0.0
616
Normal
0.0
1045
Tumor
0.0
111
Normal
0.0
1013
Tumor
0.0
148
Normal
0.0
1015
Tumor
0.0
954
Normal
0.0
966
Normal
0.0
386
Normal
0.0
778
Normal
0.0
258
Normal
0.0
686
Normal
0.0
433
Tumor
0.0
328
Normal
0.0
492
Normal
0.0
218
Normal
0.0
436
Normal
0.0
488
Normal
0.0
944
Normal
0.0
786
Normal
0.0
823
Tumor
0.0
411
Tumor
0.0
716
Normal
0.0
421
Tumor
0.0
214
Normal
0.0
257
Tumor
0.0
392
Normal
0.0
824
Normal
0.0
422
Normal
0.0
957
Tumor
0.0
874
Normal
0.0
516
Normal
0.0
452
Normal
0.0
746
Normal
-0.1
127
Tumor
-0.1
527
Tumor
-0.1
861
Tumor
-0.1
187
Tumor
-0.1
628
Normal
-0.1
477
Tumor
-0.1
535
Tumor
-0.1
444
Normal
-0.1
636
Normal
-0.1
222
Normal
-0.1
188
Normal
-0.1
464
Normal
-0.1
857
Tumor
-0.1
858
Normal
-0.1
698
Normal
-0.1
938
Normal
-0.1
545
Tumor
-0.1
327
Tumor
-0.1
343
Tumor
-0.1
272
Normal
-0.1
446
Normal
-0.1
416
Normal
-0.1
737
Tumor
-0.1
572
Normal
-0.1
363
Tumor
-0.1
818
Normal
-0.1
882
Normal
-0.1
481
Tumor
-0.1
724
Normal
-0.1
467
Tumor
-0.1
412
Normal
-0.1
1016
Normal
-0.1
426
Normal
-0.1
455
Tumor
-0.1
926
Normal
-0.1
538
Normal
-0.1
114
Normal
-0.1
968
Normal
-0.1
125
Tumor
-0.1
262
Normal
-0.1
461
Tumor
-0.2
468
Normal
-0.2
413
Tumor
-0.2
617
Tumor
-0.2
878
Normal
-0.2
365
Tumor
-0.2
1044
Normal
-0.2
713
Tumor
-0.2
1046
Normal
-0.2
958
Normal
-0.2
494
Normal
-0.2
1028
Normal
-0.2
728
Normal
-0.2
911
Tumor
-0.2
434
Normal
-0.2
641
Tumor
-0.2
922
Normal
-0.2
785
Tumor
-0.2
868
Normal
-0.2
482
Normal
-0.2
352
Normal
-0.2
212
Normal
-0.2
448
Normal
-0.2
526
Normal
-0.2
914
Normal
-0.2
884
Normal
-0.2
472
Normal
-0.2
261
Tumor
-0.2
918
Normal
-0.2
342
Normal
-0.2
525
Tumor
-0.2
925
Tumor
-0.3
984
Normal
-0.3
697
Tumor
-0.3
852
Normal
-0.3
284
Normal
-0.3
524
Normal
-0.3
518
Normal
-0.3
361
Tumor
-0.3
354
Normal
-0.3
286
Normal
-0.3
912
Normal
-0.3
982
Normal
-0.3
1042
Normal
-0.3
478
Normal
-0.3
863
Tumor
-0.3
721
Tumor
-0.3
864
Normal
-0.3
1026
Normal
-0.3
462
Normal
-0.3
983
Tumor
-0.3
862
Normal
-0.4
1014
Normal
-0.4
536
Normal
-0.4
924
Normal
-0.4
224
Normal
-0.4
866
Normal
-0.4
1032
Normal
-0.4
358
Normal
-0.4
112
Tumor
-0.4
228
Normal
-0.4
1022
Normal
-0.4
978
Normal
-0.4
916
Normal
-0.4
915
Tumor
-0.4
471
Tumor
-0.4
816
Normal
-0.4
474
Normal
-0.4
123
Tumor
-0.4
376
Normal
-0.5
715
Tumor
-0.5
514
Normal
-0.5
366
Normal
-0.5
362
Normal
-0.5
777
Tumor
-0.5
344
Normal
-0.6
1043
Tumor
-0.6
368
Normal
-0.6
513
Tumor
-0.6
685
Tumor
-0.7
384
Normal
-0.8
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
