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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIR is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
136.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
334.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
307.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
298.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
280.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
276.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
274.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
268.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
264.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
263.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
255.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
255.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
252.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
251.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
251.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
250.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
249.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
248.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
244.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
239.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
238.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
235.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
233.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
230.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
230.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
226.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
226.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
224.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
223.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
222.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
222.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
222.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
218.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
213.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
212.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
204.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
201.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
200.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
196.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
196.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
196.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
196.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
196.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
195.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
194.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
192.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
192.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
191.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
190.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
189.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
189.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
189.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
189.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
189.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
188.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
187.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
186.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
185.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
185.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
185.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
185.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
185.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
182.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
181.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
181.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
179.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
178.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
176.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
175.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
174.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
170.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
169.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
169.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
168.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
168.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
168.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
167.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
167.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
167.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
166.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
166.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
166.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
165.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
164.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
164.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
164.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
163.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
163.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
163.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
162.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
161.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
160.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
160.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
160.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
159.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
159.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
159.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
158.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
158.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
157.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
157.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
157.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
157.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
155.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
155.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
154.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
154.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
153.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
153.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
151.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
151.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
151.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
150.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
150.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
150.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
149.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
148.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
148.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
148.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
147.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
147.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
146.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
146.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
146.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
146.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
145.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
144.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
144.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
144.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
143.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
142.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
142.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
142.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
141.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
141.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
140.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
139.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
139.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
139.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
139.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
139.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
138.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
138.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
138.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
137.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
137.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
137.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
137.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
137.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
137.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
135.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
135.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
135.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
135.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
134.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
134.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
134.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
134.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
134.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
133.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
133.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
133.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
132.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
131.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
131.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
130.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
130.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
130.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
129.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
129.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
129.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
129.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
128.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
128.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
128.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
128.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
128.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
127.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
127.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
127.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
126.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
126.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
126.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
126.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
126.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
125.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
125.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
125.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
125.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
125.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
125.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
125.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
124.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
124.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
124.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
123.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
123.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
122.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
122.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
122.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
122.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
121.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
121.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
121.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
121.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
121.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
120.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
119.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
119.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
119.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
118.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
118.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
118.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
118.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
118.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
118.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
117.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
117.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
115.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
115.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
115.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
115.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
115.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
115.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
114.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
114.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
114.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
113.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
112.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
112.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
112.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
112.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
111.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
111.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
111.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
111.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
111.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
111.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
111.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
111.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
110.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
110.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
109.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
109.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
109.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
108.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
107.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
107.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
107.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
107.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
106.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
106.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
105.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
105.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
105.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
105.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
105.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
105.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
104.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
104.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
104.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
104.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
104.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
103.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
103.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
103.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
102.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
102.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
102.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
102.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
102.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
101.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
101.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
100.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
100.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
100.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
100.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
99.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
99.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
99.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
98.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
98.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
98.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
98.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
97.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
97.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
97.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
96.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
96.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
96.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
96.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
95.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
94.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
94.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
94.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
94.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
93.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
93.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
93.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
93.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
93.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
92.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
92.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
92.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
91.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
90.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
90.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
90.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
90.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
90.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
89.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
89.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
89.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
89.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
89.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
87.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
87.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
87.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
87.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
86.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
85.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
85.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
85.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
85.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
84.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
84.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
83.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
83.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
82.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
82.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
81.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
81.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
81.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
80.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
80.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
79.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
79.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
78.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
78.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
77.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
76.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
75.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
75.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
75.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
75.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
75.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
74.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
74.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
74.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
73.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
72.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
72.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
72.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
71.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
68.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
67.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
66.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
65.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
63.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
62.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
60.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
55.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
737
Tumor
1.3
965
Tumor
1.2
131
Tumor
1.2
411
Tumor
1.0
285
Tumor
1.0
1013
Tumor
1.0
647
Tumor
1.0
527
Tumor
0.9
523
Tumor
0.9
545
Tumor
0.9
943
Tumor
0.9
881
Tumor
0.8
937
Tumor
0.8
865
Tumor
0.8
211
Tumor
0.8
567
Tumor
0.8
743
Tumor
0.7
553
Tumor
0.7
977
Tumor
0.7
493
Tumor
0.7
967
Tumor
0.7
463
Tumor
0.7
123
Tumor
0.7
447
Tumor
0.7
497
Tumor
0.7
727
Tumor
0.7
327
Tumor
0.6
923
Tumor
0.6
537
Tumor
0.6
953
Tumor
0.6
921
Tumor
0.6
357
Tumor
0.6
777
Tumor
0.6
1031
Tumor
0.6
983
Tumor
0.6
663
Tumor
0.6
957
Tumor
0.5
721
Tumor
0.5
267
Tumor
0.5
685
Tumor
0.5
271
Tumor
0.5
697
Tumor
0.5
431
Tumor
0.5
465
Tumor
0.5
813
Tumor
0.5
455
Tumor
0.5
393
Tumor
0.5
413
Tumor
0.5
755
Tumor
0.5
1025
Tumor
0.5
331
Tumor
0.5
461
Tumor
0.5
785
Tumor
0.5
815
Tumor
0.4
695
Tumor
0.4
473
Tumor
0.4
297
Tumor
0.4
955
Tumor
0.4
963
Tumor
0.4
487
Tumor
0.4
966
Normal
0.4
557
Tumor
0.4
863
Tumor
0.4
515
Tumor
0.4
951
Tumor
0.4
814
Normal
0.4
351
Tumor
0.4
533
Tumor
0.4
975
Tumor
0.4
518
Normal
0.4
125
Tumor
0.4
355
Tumor
0.3
277
Tumor
0.3
861
Tumor
0.3
141
Tumor
0.3
938
Normal
0.3
984
Normal
0.3
696
Normal
0.3
513
Tumor
0.3
554
Normal
0.3
715
Tumor
0.3
981
Tumor
0.3
478
Normal
0.3
978
Normal
0.3
883
Tumor
0.3
311
Tumor
0.3
481
Tumor
0.3
483
Tumor
0.3
492
Normal
0.3
471
Tumor
0.3
467
Tumor
0.3
498
Normal
0.3
857
Tumor
0.3
142
Normal
0.3
221
Tumor
0.3
661
Tumor
0.3
866
Normal
0.2
924
Normal
0.2
823
Tumor
0.2
714
Normal
0.2
1015
Tumor
0.2
858
Normal
0.2
365
Tumor
0.2
477
Tumor
0.2
538
Normal
0.2
1021
Tumor
0.2
484
Normal
0.2
536
Normal
0.2
913
Tumor
0.2
954
Normal
0.2
878
Normal
0.2
412
Normal
0.2
716
Normal
0.2
917
Tumor
0.2
425
Tumor
0.2
488
Normal
0.2
1014
Normal
0.2
415
Tumor
0.2
952
Normal
0.2
1026
Normal
0.2
1043
Tumor
0.2
615
Tumor
0.2
686
Normal
0.2
744
Normal
0.2
824
Normal
0.2
1045
Tumor
0.2
395
Tumor
0.2
746
Normal
0.2
817
Tumor
0.2
383
Tumor
0.1
385
Tumor
0.1
573
Tumor
0.1
922
Normal
0.1
472
Normal
0.1
524
Normal
0.1
558
Normal
0.1
852
Normal
0.1
968
Normal
0.1
911
Tumor
0.1
724
Normal
0.1
516
Normal
0.1
572
Normal
0.1
778
Normal
0.1
443
Tumor
0.1
915
Tumor
0.1
494
Normal
0.1
944
Normal
0.1
958
Normal
0.1
283
Tumor
0.1
286
Normal
0.1
568
Normal
0.1
482
Normal
0.1
564
Normal
0.1
364
Normal
0.1
628
Normal
0.1
517
Tumor
0.1
228
Normal
0.1
635
Tumor
0.1
187
Tumor
0.1
313
Tumor
0.1
982
Normal
0.1
864
Normal
0.1
882
Normal
0.1
353
Tumor
0.1
546
Normal
0.1
862
Normal
0.1
528
Normal
0.0
195
Tumor
0.0
445
Tumor
0.0
816
Normal
0.0
261
Tumor
0.0
171
Tumor
0.0
918
Normal
0.0
232
Normal
0.0
574
Normal
0.0
284
Normal
0.0
1016
Normal
0.0
926
Normal
0.0
916
Normal
0.0
268
Normal
0.0
474
Normal
0.0
877
Tumor
0.0
664
Normal
0.0
534
Normal
0.0
416
Normal
0.0
137
Tumor
0.0
535
Tumor
0.0
912
Normal
0.0
851
Tumor
0.0
113
Tumor
0.0
742
Normal
0.0
224
Normal
0.0
873
Tumor
0.0
362
Normal
0.0
456
Normal
0.0
756
Normal
0.0
462
Normal
0.0
433
Tumor
0.0
298
Normal
0.0
867
Tumor
0.0
617
Tumor
0.0
741
Tumor
0.0
396
Normal
0.0
571
Tumor
0.0
514
Normal
0.0
213
Tumor
-0.1
1022
Normal
-0.1
1044
Normal
-0.1
146
Normal
-0.1
722
Normal
-0.1
1032
Normal
-0.1
328
Normal
-0.1
874
Normal
-0.1
1028
Normal
-0.1
786
Normal
-0.1
262
Normal
-0.1
352
Normal
-0.1
375
Tumor
-0.1
436
Normal
-0.1
145
Tumor
-0.1
698
Normal
-0.1
223
Tumor
-0.1
662
Normal
-0.1
112
Tumor
-0.1
728
Normal
-0.1
648
Normal
-0.1
135
Tumor
-0.1
526
Normal
-0.1
136
Normal
-0.1
192
Normal
-0.1
212
Normal
-0.1
217
Tumor
-0.1
914
Normal
-0.1
976
Normal
-0.1
386
Normal
-0.1
818
Normal
-0.1
272
Normal
-0.1
222
Normal
-0.1
114
Normal
-0.1
124
Normal
-0.1
491
Tumor
-0.1
1046
Normal
-0.1
665
Tumor
-0.1
563
Tumor
-0.1
451
Tumor
-0.1
392
Normal
-0.1
616
Normal
-0.2
444
Normal
-0.2
884
Normal
-0.2
738
Normal
-0.2
138
Normal
-0.2
641
Tumor
-0.2
391
Tumor
-0.2
452
Normal
-0.2
191
Tumor
-0.2
723
Tumor
-0.2
361
Tumor
-0.2
161
Tumor
-0.2
227
Tumor
-0.2
964
Normal
-0.2
218
Normal
-0.2
148
Normal
-0.2
466
Normal
-0.2
367
Tumor
-0.2
434
Normal
-0.2
423
Tumor
-0.2
525
Tumor
-0.2
446
Normal
-0.2
147
Tumor
-0.2
925
Tumor
-0.2
356
Normal
-0.2
448
Normal
-0.2
196
Normal
-0.2
126
Normal
-0.2
111
Normal
-0.2
366
Normal
-0.2
132
Normal
-0.2
468
Normal
-0.2
642
Normal
-0.2
384
Normal
-0.2
354
Normal
-0.2
636
Normal
-0.2
344
Normal
-0.2
376
Normal
-0.3
464
Normal
-0.3
1041
Tumor
-0.3
956
Normal
-0.3
627
Tumor
-0.3
671
Tumor
-0.3
618
Normal
-0.3
424
Normal
-0.3
258
Normal
-0.3
672
Normal
-0.3
1027
Tumor
-0.3
422
Normal
-0.3
188
Normal
-0.3
426
Normal
-0.3
666
Normal
-0.3
128
Normal
-0.3
432
Normal
-0.3
368
Normal
-0.3
127
Tumor
-0.3
341
Tumor
-0.3
185
Tumor
-0.3
312
Normal
-0.3
162
Normal
-0.3
713
Tumor
-0.4
868
Normal
-0.4
214
Normal
-0.4
428
Normal
-0.4
394
Normal
-0.4
278
Normal
-0.4
421
Tumor
-0.4
363
Tumor
-0.4
414
Normal
-0.4
388
Normal
-0.4
343
Tumor
-0.4
1042
Normal
-0.4
358
Normal
-0.4
186
Normal
-0.5
314
Normal
-0.5
427
Tumor
-0.5
172
Normal
-0.5
332
Normal
-0.5
745
Tumor
-0.5
435
Tumor
-0.5
231
Tumor
-0.6
342
Normal
-0.7
387
Tumor
-0.7
257
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.