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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ECD is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
22.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
20.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
17.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
16.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
15.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
11.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
8.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
7.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ECD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
231
Samples
Sample
Description
TPM
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
25.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
19.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
19.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
18.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
17.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
17.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
17.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
16.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
13.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
13.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
11.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.5
411
Tumor
0.8
925
Tumor
0.8
123
Tumor
0.8
473
Tumor
0.7
923
Tumor
0.7
697
Tumor
0.7
647
Tumor
0.7
957
Tumor
0.6
537
Tumor
0.6
331
Tumor
0.6
1021
Tumor
0.6
436
Normal
0.6
851
Tumor
0.6
571
Tumor
0.6
921
Tumor
0.5
187
Tumor
0.5
434
Normal
0.5
432
Normal
0.5
951
Tumor
0.5
535
Tumor
0.5
953
Tumor
0.5
1031
Tumor
0.5
311
Tumor
0.5
446
Normal
0.5
1027
Tumor
0.5
568
Normal
0.4
937
Tumor
0.4
355
Tumor
0.4
956
Normal
0.4
341
Tumor
0.4
617
Tumor
0.4
883
Tumor
0.4
955
Tumor
0.4
413
Tumor
0.4
465
Tumor
0.4
666
Normal
0.4
881
Tumor
0.4
983
Tumor
0.4
483
Tumor
0.3
443
Tumor
0.3
745
Tumor
0.3
414
Normal
0.3
938
Normal
0.3
113
Tumor
0.3
451
Tumor
0.3
493
Tumor
0.3
1025
Tumor
0.3
636
Normal
0.3
616
Normal
0.3
574
Normal
0.3
553
Tumor
0.3
815
Tumor
0.3
534
Normal
0.3
471
Tumor
0.3
124
Normal
0.3
817
Tumor
0.3
954
Normal
0.3
297
Tumor
0.3
232
Normal
0.3
185
Tumor
0.3
431
Tumor
0.3
497
Tumor
0.2
564
Normal
0.2
258
Normal
0.2
447
Tumor
0.2
367
Tumor
0.2
146
Normal
0.2
257
Tumor
0.2
915
Tumor
0.2
536
Normal
0.2
981
Tumor
0.2
661
Tumor
0.2
391
Tumor
0.2
975
Tumor
0.2
231
Tumor
0.2
484
Normal
0.2
342
Normal
0.2
477
Tumor
0.2
313
Tumor
0.2
533
Tumor
0.2
172
Normal
0.2
433
Tumor
0.2
695
Tumor
0.2
148
Normal
0.2
125
Tumor
0.2
375
Tumor
0.2
186
Normal
0.2
554
Normal
0.2
648
Normal
0.2
132
Normal
0.2
127
Tumor
0.2
227
Tumor
0.2
642
Normal
0.1
572
Normal
0.1
563
Tumor
0.1
332
Normal
0.1
713
Tumor
0.1
467
Tumor
0.1
618
Normal
0.1
944
Normal
0.1
272
Normal
0.1
444
Normal
0.1
482
Normal
0.1
1042
Normal
0.1
755
Tumor
0.1
376
Normal
0.1
421
Tumor
0.1
1026
Normal
0.1
478
Normal
0.1
128
Normal
0.1
223
Tumor
0.1
435
Tumor
0.1
528
Normal
0.1
388
Normal
0.1
615
Tumor
0.1
778
Normal
0.1
824
Normal
0.1
415
Tumor
0.1
262
Normal
0.1
112
Tumor
0.1
627
Tumor
0.1
724
Normal
0.1
463
Tumor
0.1
1043
Tumor
0.1
498
Normal
0.1
462
Normal
0.1
964
Normal
0.1
312
Normal
0.1
818
Normal
0.1
424
Normal
0.1
285
Tumor
0.0
943
Tumor
0.0
1016
Normal
0.0
211
Tumor
0.0
917
Tumor
0.0
573
Tumor
0.0
665
Tumor
0.0
472
Normal
0.0
314
Normal
0.0
664
Normal
0.0
952
Normal
0.0
741
Tumor
0.0
1041
Tumor
0.0
277
Tumor
0.0
662
Normal
0.0
474
Normal
0.0
426
Normal
0.0
967
Tumor
0.0
488
Normal
0.0
963
Tumor
0.0
358
Normal
0.0
494
Normal
0.0
728
Normal
0.0
481
Tumor
0.0
527
Tumor
0.0
114
Normal
0.0
271
Tumor
0.0
926
Normal
0.0
394
Normal
0.0
743
Tumor
0.0
698
Normal
0.0
357
Tumor
0.0
268
Normal
N/A
1022
Normal
0.0
487
Tumor
0.0
396
Normal
0.0
286
Normal
0.0
982
Normal
0.0
966
Normal
0.0
142
Normal
0.0
126
Normal
0.0
147
Tumor
0.0
111
Normal
0.0
1032
Normal
0.0
882
Normal
0.0
884
Normal
0.0
422
Normal
0.0
978
Normal
0.0
641
Tumor
0.0
874
Normal
0.0
852
Normal
0.0
912
Normal
0.0
628
Normal
0.0
392
Normal
0.0
298
Normal
0.0
217
Tumor
0.0
221
Tumor
0.0
858
Normal
0.0
455
Tumor
0.0
368
Normal
0.0
136
Normal
0.0
877
Tumor
0.0
224
Normal
0.0
722
Normal
0.0
715
Tumor
-0.1
188
Normal
-0.1
861
Tumor
-0.1
924
Normal
-0.1
814
Normal
-0.1
363
Tumor
-0.1
366
Normal
-0.1
916
Normal
-0.1
361
Tumor
-0.1
464
Normal
-0.1
141
Tumor
-0.1
968
Normal
-0.1
546
Normal
-0.1
445
Tumor
-0.1
131
Tumor
-0.1
362
Normal
-0.1
267
Tumor
-0.1
918
Normal
-0.1
545
Tumor
-0.1
716
Normal
-0.1
746
Normal
-0.1
395
Tumor
-0.1
1028
Normal
-0.1
672
Normal
-0.1
492
Normal
-0.1
737
Tumor
-0.1
352
Normal
-0.1
423
Tumor
-0.1
138
Normal
-0.1
261
Tumor
-0.1
1046
Normal
-0.1
727
Tumor
-0.1
386
Normal
-0.1
526
Normal
-0.1
823
Tumor
-0.1
412
Normal
-0.1
1014
Normal
-0.1
984
Normal
-0.1
228
Normal
-0.1
714
Normal
-0.1
865
Tumor
-0.1
425
Tumor
-0.1
922
Normal
-0.1
913
Tumor
-0.1
567
Tumor
-0.1
914
Normal
-0.1
452
Normal
-0.1
976
Normal
-0.1
635
Tumor
-0.1
365
Tumor
-0.1
344
Normal
-0.1
416
Normal
-0.1
816
Normal
-0.1
353
Tumor
-0.1
491
Tumor
-0.1
785
Tumor
-0.1
384
Normal
-0.1
383
Tumor
-0.1
786
Normal
-0.2
738
Normal
-0.2
1015
Tumor
-0.2
1044
Normal
-0.2
525
Tumor
-0.2
191
Tumor
-0.2
385
Tumor
-0.2
756
Normal
-0.2
671
Tumor
-0.2
278
Normal
-0.2
777
Tumor
-0.2
466
Normal
-0.2
557
Tumor
-0.2
393
Tumor
-0.2
468
Normal
-0.2
862
Normal
-0.2
196
Normal
-0.2
911
Tumor
-0.2
162
Normal
-0.2
195
Tumor
-0.2
864
Normal
-0.2
878
Normal
-0.2
212
Normal
-0.2
428
Normal
-0.2
461
Tumor
-0.2
723
Tumor
-0.2
857
Tumor
-0.2
1013
Tumor
-0.2
448
Normal
-0.2
538
Normal
-0.2
145
Tumor
-0.2
524
Normal
-0.2
364
Normal
-0.2
387
Tumor
-0.2
686
Normal
-0.2
813
Tumor
-0.2
663
Tumor
-0.3
283
Tumor
-0.3
135
Tumor
-0.3
558
Normal
-0.3
343
Tumor
-0.3
327
Tumor
-0.3
1045
Tumor
-0.3
685
Tumor
-0.3
351
Tumor
-0.3
213
Tumor
-0.3
192
Normal
-0.3
873
Tumor
-0.3
742
Normal
-0.3
744
Normal
-0.3
214
Normal
-0.3
977
Tumor
-0.3
721
Tumor
-0.3
866
Normal
-0.4
328
Normal
-0.4
523
Tumor
-0.4
958
Normal
-0.4
137
Tumor
-0.4
427
Tumor
-0.4
867
Tumor
-0.4
222
Normal
-0.4
161
Tumor
-0.4
354
Normal
-0.4
284
Normal
-0.4
696
Normal
-0.4
863
Tumor
-0.4
514
Normal
-0.4
356
Normal
-0.4
456
Normal
-0.4
218
Normal
-0.5
868
Normal
-0.5
171
Tumor
-0.5
518
Normal
-0.5
513
Tumor
-0.8
517
Tumor
-0.8
516
Normal
-0.9
515
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
