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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM24 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
50.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
49.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
45.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
43.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
40.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
35.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
33.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
32.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
30.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
30.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
28.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
27.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
27.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
27.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
27.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
26.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
25.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
25.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
25.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
23.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
22.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
22.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
22.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
19.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
19.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
18.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
17.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
17.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
10.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM24 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.8
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
132.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
85.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
65.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
60.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
60.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
58.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
58.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
58.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
58.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
54.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
49.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
45.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
43.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
41.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
41.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
32.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
32.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
29.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
28.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
28.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
26.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
25.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
25.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
24.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
23.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
22.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
21.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
21.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
19.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
17.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
16.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
16.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
16.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
16.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
11.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
6.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.0
951
Tumor
1.6
965
Tumor
1.6
473
Tumor
1.6
131
Tumor
1.5
517
Tumor
1.4
661
Tumor
1.3
285
Tumor
1.2
425
Tumor
1.1
671
Tumor
1.0
1025
Tumor
1.0
351
Tumor
1.0
865
Tumor
0.9
363
Tumor
0.9
877
Tumor
0.9
647
Tumor
0.9
921
Tumor
0.9
171
Tumor
0.8
331
Tumor
0.8
463
Tumor
0.8
967
Tumor
0.8
817
Tumor
0.8
123
Tumor
0.8
1021
Tumor
0.7
413
Tumor
0.7
391
Tumor
0.7
881
Tumor
0.7
411
Tumor
0.7
1031
Tumor
0.7
641
Tumor
0.7
537
Tumor
0.7
221
Tumor
0.7
567
Tumor
0.7
715
Tumor
0.7
635
Tumor
0.6
975
Tumor
0.6
983
Tumor
0.6
271
Tumor
0.6
851
Tumor
0.6
227
Tumor
0.6
147
Tumor
0.6
545
Tumor
0.5
553
Tumor
0.5
231
Tumor
0.5
1013
Tumor
0.5
367
Tumor
0.5
341
Tumor
0.5
355
Tumor
0.5
161
Tumor
0.5
112
Tumor
0.5
497
Tumor
0.5
277
Tumor
0.5
435
Tumor
0.5
211
Tumor
0.4
387
Tumor
0.4
385
Tumor
0.4
663
Tumor
0.4
977
Tumor
0.4
523
Tumor
0.4
451
Tumor
0.4
883
Tumor
0.4
695
Tumor
0.4
313
Tumor
0.4
375
Tumor
0.4
957
Tumor
0.4
431
Tumor
0.4
737
Tumor
0.3
923
Tumor
0.3
943
Tumor
0.3
125
Tumor
0.3
727
Tumor
0.3
471
Tumor
0.3
533
Tumor
0.3
813
Tumor
0.3
815
Tumor
0.3
573
Tumor
0.3
445
Tumor
0.3
257
Tumor
0.3
937
Tumor
0.3
283
Tumor
0.2
535
Tumor
0.2
297
Tumor
0.2
477
Tumor
0.2
465
Tumor
0.2
963
Tumor
0.2
467
Tumor
0.2
665
Tumor
0.2
433
Tumor
0.2
443
Tumor
0.2
185
Tumor
0.2
213
Tumor
0.2
217
Tumor
0.2
127
Tumor
0.2
724
Normal
0.2
393
Tumor
0.1
814
Normal
0.1
481
Tumor
0.1
873
Tumor
0.1
113
Tumor
0.1
557
Tumor
0.1
427
Tumor
0.1
415
Tumor
0.1
1041
Tumor
0.1
483
Tumor
0.1
447
Tumor
0.1
191
Tumor
0.1
491
Tumor
0.1
493
Tumor
0.1
267
Tumor
0.1
685
Tumor
0.1
525
Tumor
0.1
195
Tumor
0.1
187
Tumor
0.1
617
Tumor
0.0
268
Normal
0.0
455
Tumor
0.0
925
Tumor
0.0
863
Tumor
0.0
911
Tumor
0.0
423
Tumor
0.0
383
Tumor
0.0
527
Tumor
0.0
697
Tumor
0.0
915
Tumor
0.0
365
Tumor
0.0
777
Tumor
0.0
361
Tumor
0.0
615
Tumor
0.0
357
Tumor
0.0
261
Tumor
-0.1
135
Tumor
-0.1
563
Tumor
-0.1
571
Tumor
-0.1
395
Tumor
-0.1
343
Tumor
-0.1
232
Normal
-0.1
953
Tumor
-0.1
192
Normal
-0.1
258
Normal
-0.1
1045
Tumor
-0.1
744
Normal
-0.1
478
Normal
-0.1
515
Tumor
-0.1
713
Tumor
-0.1
755
Tumor
-0.1
461
Tumor
-0.1
1016
Normal
-0.1
412
Normal
-0.1
958
Normal
-0.1
786
Normal
-0.1
223
Tumor
-0.1
861
Tumor
-0.1
742
Normal
-0.1
741
Tumor
-0.1
513
Tumor
-0.1
756
Normal
-0.1
272
Normal
-0.1
141
Tumor
-0.1
446
Normal
-0.1
196
Normal
-0.1
396
Normal
-0.1
785
Tumor
-0.1
262
Normal
-0.1
534
Normal
-0.1
745
Tumor
-0.1
222
Normal
-0.2
468
Normal
-0.2
955
Tumor
-0.2
723
Tumor
-0.2
982
Normal
-0.2
354
Normal
-0.2
1043
Tumor
-0.2
327
Tumor
-0.2
1015
Tumor
-0.2
328
Normal
-0.2
426
Normal
-0.2
436
Normal
-0.2
421
Tumor
-0.2
954
Normal
-0.2
528
Normal
-0.2
964
Normal
-0.2
392
Normal
-0.2
388
Normal
-0.2
884
Normal
-0.2
858
Normal
-0.2
984
Normal
-0.2
456
Normal
-0.2
524
Normal
-0.2
358
Normal
-0.2
978
Normal
-0.2
464
Normal
-0.2
148
Normal
-0.2
444
Normal
-0.2
472
Normal
-0.2
386
Normal
-0.2
364
Normal
-0.2
466
Normal
-0.2
952
Normal
-0.2
376
Normal
-0.2
214
Normal
-0.2
332
Normal
-0.2
1032
Normal
-0.2
714
Normal
-0.2
278
Normal
-0.2
186
Normal
-0.2
416
Normal
-0.2
356
Normal
-0.2
824
Normal
-0.2
488
Normal
-0.2
145
Tumor
-0.2
698
Normal
-0.2
414
Normal
-0.2
917
Tumor
-0.2
218
Normal
-0.2
728
Normal
-0.2
487
Tumor
-0.2
944
Normal
-0.2
474
Normal
-0.2
938
Normal
-0.2
722
Normal
-0.2
448
Normal
-0.2
976
Normal
-0.2
428
Normal
-0.2
1014
Normal
-0.3
132
Normal
-0.3
818
Normal
-0.3
538
Normal
-0.3
721
Tumor
-0.3
492
Normal
-0.3
648
Normal
-0.3
686
Normal
-0.3
664
Normal
-0.3
136
Normal
-0.3
882
Normal
-0.3
146
Normal
-0.3
857
Tumor
-0.3
314
Normal
-0.3
494
Normal
-0.3
462
Normal
-0.3
746
Normal
-0.3
142
Normal
-0.3
452
Normal
-0.3
352
Normal
-0.3
126
Normal
-0.3
484
Normal
-0.3
432
Normal
-0.3
434
Normal
-0.3
778
Normal
-0.3
137
Tumor
-0.3
966
Normal
-0.3
284
Normal
-0.3
878
Normal
-0.3
1026
Normal
-0.3
124
Normal
-0.3
424
Normal
-0.3
916
Normal
-0.3
312
Normal
-0.3
662
Normal
-0.3
516
Normal
-0.3
114
Normal
-0.3
922
Normal
-0.3
666
Normal
-0.3
212
Normal
-0.3
636
Normal
-0.3
1042
Normal
-0.3
111
Normal
-0.3
311
Tumor
-0.3
852
Normal
-0.3
1027
Tumor
-0.3
128
Normal
-0.3
572
Normal
-0.3
394
Normal
-0.3
554
Normal
-0.3
568
Normal
-0.3
286
Normal
-0.3
823
Tumor
-0.3
498
Normal
-0.3
536
Normal
-0.3
1046
Normal
-0.3
162
Normal
-0.3
716
Normal
-0.3
546
Normal
-0.3
738
Normal
-0.3
981
Tumor
-0.3
422
Normal
-0.3
342
Normal
-0.4
366
Normal
-0.4
926
Normal
-0.4
172
Normal
-0.4
526
Normal
-0.4
564
Normal
-0.4
1028
Normal
-0.4
912
Normal
-0.4
913
Tumor
-0.4
618
Normal
-0.4
353
Tumor
-0.4
228
Normal
-0.4
874
Normal
-0.4
956
Normal
-0.4
672
Normal
-0.4
482
Normal
-0.4
362
Normal
-0.4
298
Normal
-0.4
188
Normal
-0.4
914
Normal
-0.4
616
Normal
-0.4
384
Normal
-0.4
574
Normal
-0.4
138
Normal
-0.4
1044
Normal
-0.4
627
Tumor
-0.4
518
Normal
-0.4
867
Tumor
-0.4
558
Normal
-0.4
514
Normal
-0.4
224
Normal
-0.4
864
Normal
-0.4
968
Normal
-0.4
368
Normal
-0.5
862
Normal
-0.5
866
Normal
-0.5
918
Normal
-0.5
628
Normal
-0.5
696
Normal
-0.5
868
Normal
-0.5
1022
Normal
-0.5
642
Normal
-0.5
924
Normal
-0.5
344
Normal
-0.5
816
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
