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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FKBP9 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
182.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
99.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
90.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
88.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
86.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
85.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
77.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
76.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
74.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
64.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
61.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
49.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
49.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
48.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
45.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
45.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
44.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
44.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
43.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
43.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
41.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
39.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
36.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
35.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
35.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
35.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
33.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
32.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
31.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
31.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
31.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
29.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
29.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
28.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
28.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
28.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
27.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
26.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
26.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
24.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
23.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
23.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
23.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
22.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
21.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
20.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
20.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
19.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
19.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
18.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
18.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
17.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
17.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
17.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
15.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
13.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
13.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
12.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
12.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
11.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
11.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FKBP9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
55.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
53.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
52.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
47.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
36.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
33.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
28.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
27.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
22.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
22.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
19.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
16.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
16.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
15.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
12.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
10.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
4.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
4.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
3.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
283
Tumor
1.9
743
Tumor
1.6
351
Tumor
1.3
385
Tumor
1.1
943
Tumor
0.9
463
Tumor
0.9
817
Tumor
0.9
917
Tumor
0.8
1015
Tumor
0.8
285
Tumor
0.8
1013
Tumor
0.8
545
Tumor
0.8
881
Tumor
0.8
785
Tumor
0.8
355
Tumor
0.7
455
Tumor
0.7
125
Tumor
0.7
491
Tumor
0.7
131
Tumor
0.7
445
Tumor
0.7
913
Tumor
0.7
755
Tumor
0.7
536
Normal
0.7
697
Tumor
0.6
375
Tumor
0.6
311
Tumor
0.6
814
Normal
0.6
343
Tumor
0.6
447
Tumor
0.6
937
Tumor
0.6
813
Tumor
0.6
671
Tumor
0.6
517
Tumor
0.6
387
Tumor
0.6
525
Tumor
0.5
975
Tumor
0.5
965
Tumor
0.5
727
Tumor
0.5
923
Tumor
0.5
865
Tumor
0.4
925
Tumor
0.4
977
Tumor
0.4
953
Tumor
0.4
857
Tumor
0.4
483
Tumor
0.4
963
Tumor
0.4
983
Tumor
0.4
297
Tumor
0.4
161
Tumor
0.4
951
Tumor
0.4
1045
Tumor
0.4
211
Tumor
0.3
331
Tumor
0.3
195
Tumor
0.3
1021
Tumor
0.3
777
Tumor
0.3
515
Tumor
0.3
461
Tumor
0.3
863
Tumor
0.3
341
Tumor
0.3
981
Tumor
0.3
877
Tumor
0.3
147
Tumor
0.3
185
Tumor
0.3
497
Tumor
0.3
137
Tumor
0.3
444
Normal
0.2
395
Tumor
0.2
427
Tumor
0.2
713
Tumor
0.2
421
Tumor
0.2
277
Tumor
0.2
921
Tumor
0.2
915
Tumor
0.2
213
Tumor
0.2
327
Tumor
0.2
257
Tumor
0.2
492
Normal
0.2
563
Tumor
0.2
967
Tumor
0.2
473
Tumor
0.2
363
Tumor
0.2
223
Tumor
0.2
383
Tumor
0.2
367
Tumor
0.2
227
Tumor
0.2
535
Tumor
0.1
916
Normal
0.1
647
Tumor
0.1
538
Normal
0.1
573
Tumor
0.1
413
Tumor
0.1
627
Tumor
0.1
685
Tumor
0.1
498
Normal
0.1
537
Tumor
0.1
433
Tumor
0.1
493
Tumor
0.1
145
Tumor
0.1
957
Tumor
0.1
187
Tumor
0.1
527
Tumor
0.1
861
Tumor
0.1
553
Tumor
0.1
487
Tumor
0.0
823
Tumor
0.0
471
Tumor
0.0
911
Tumor
0.0
365
Tumor
0.0
435
Tumor
0.0
524
Normal
0.0
191
Tumor
0.0
188
Normal
0.0
478
Normal
0.0
425
Tumor
0.0
873
Tumor
0.0
883
Tumor
0.0
192
Normal
0.0
477
Tumor
0.0
852
Normal
0.0
523
Tumor
-0.1
271
Tumor
-0.1
212
Normal
-0.1
171
Tumor
-0.1
1028
Normal
-0.1
982
Normal
-0.1
313
Tumor
-0.1
284
Normal
-0.1
124
Normal
-0.1
1043
Tumor
-0.1
715
Tumor
-0.1
467
Tumor
-0.1
741
Tumor
-0.1
141
Tumor
-0.1
721
Tumor
-0.1
851
Tumor
-0.1
737
Tumor
-0.1
952
Normal
-0.1
268
Normal
-0.1
615
Tumor
-0.1
744
Normal
-0.1
391
Tumor
-0.1
415
Tumor
-0.1
1027
Tumor
-0.2
874
Normal
-0.2
617
Tumor
-0.2
641
Tumor
-0.2
392
Normal
-0.2
394
Normal
-0.2
867
Tumor
-0.2
113
Tumor
-0.2
978
Normal
-0.2
344
Normal
-0.2
228
Normal
-0.2
1041
Tumor
-0.2
224
Normal
-0.2
368
Normal
-0.2
261
Tumor
-0.2
724
Normal
-0.2
533
Tumor
-0.2
976
Normal
-0.2
217
Tumor
-0.2
778
Normal
-0.2
361
Tumor
-0.2
695
Tumor
-0.2
126
Normal
-0.2
665
Tumor
-0.2
786
Normal
-0.2
386
Normal
-0.2
1032
Normal
-0.2
423
Tumor
-0.2
815
Tumor
-0.2
968
Normal
-0.3
878
Normal
-0.3
142
Normal
-0.3
672
Normal
-0.3
123
Tumor
-0.3
434
Normal
-0.3
127
Tumor
-0.3
956
Normal
-0.3
412
Normal
-0.3
868
Normal
-0.3
816
Normal
-0.3
1031
Tumor
-0.3
286
Normal
-0.3
448
Normal
-0.3
528
Normal
-0.3
146
Normal
-0.3
474
Normal
-0.3
312
Normal
-0.3
1016
Normal
-0.3
958
Normal
-0.3
388
Normal
-0.3
1026
Normal
-0.3
1014
Normal
-0.3
984
Normal
-0.3
516
Normal
-0.3
514
Normal
-0.3
218
Normal
-0.3
955
Tumor
-0.3
526
Normal
-0.3
1042
Normal
-0.3
546
Normal
-0.3
1022
Normal
-0.3
944
Normal
-0.3
557
Tumor
-0.3
513
Tumor
-0.3
554
Normal
-0.3
866
Normal
-0.3
1044
Normal
-0.3
696
Normal
-0.3
114
Normal
-0.4
451
Tumor
-0.4
414
Normal
-0.4
214
Normal
-0.4
954
Normal
-0.4
396
Normal
-0.4
616
Normal
-0.4
332
Normal
-0.4
882
Normal
-0.4
628
Normal
-0.4
635
Tumor
-0.4
468
Normal
-0.4
494
Normal
-0.4
138
Normal
-0.4
864
Normal
-0.4
262
Normal
-0.4
278
Normal
-0.4
186
Normal
-0.4
686
Normal
-0.4
196
Normal
-0.4
518
Normal
-0.4
136
Normal
-0.4
728
Normal
-0.4
376
Normal
-0.4
393
Tumor
-0.4
352
Normal
-0.4
172
Normal
-0.4
567
Tumor
-0.4
221
Tumor
-0.4
914
Normal
-0.4
716
Normal
-0.4
162
Normal
-0.4
222
Normal
-0.4
111
Normal
-0.4
314
Normal
-0.4
745
Tumor
-0.4
1025
Tumor
-0.4
571
Tumor
-0.4
738
Normal
-0.4
364
Normal
-0.4
938
Normal
-0.4
618
Normal
-0.4
484
Normal
-0.4
481
Tumor
-0.4
534
Normal
-0.4
661
Tumor
-0.5
432
Normal
-0.5
148
Normal
-0.5
422
Normal
-0.5
488
Normal
-0.5
353
Tumor
-0.5
231
Tumor
-0.5
128
Normal
-0.5
723
Tumor
-0.5
354
Normal
-0.5
298
Normal
-0.5
818
Normal
-0.5
132
Normal
-0.5
428
Normal
-0.5
446
Normal
-0.5
424
Normal
-0.5
824
Normal
-0.5
918
Normal
-0.5
1046
Normal
-0.5
636
Normal
-0.5
357
Tumor
-0.5
135
Tumor
-0.5
462
Normal
-0.5
416
Normal
-0.5
714
Normal
-0.5
466
Normal
-0.5
966
Normal
-0.5
572
Normal
-0.5
443
Tumor
-0.5
756
Normal
-0.5
912
Normal
-0.5
862
Normal
-0.5
356
Normal
-0.5
742
Normal
-0.5
884
Normal
-0.5
558
Normal
-0.5
642
Normal
-0.5
436
Normal
-0.5
411
Tumor
-0.5
574
Normal
-0.5
232
Normal
-0.5
272
Normal
-0.5
858
Normal
-0.5
328
Normal
-0.6
362
Normal
-0.6
472
Normal
-0.6
452
Normal
-0.6
924
Normal
-0.6
384
Normal
-0.6
964
Normal
-0.6
666
Normal
-0.6
663
Tumor
-0.6
568
Normal
-0.6
722
Normal
-0.6
456
Normal
-0.6
258
Normal
-0.6
922
Normal
-0.6
746
Normal
-0.6
366
Normal
-0.6
465
Tumor
-0.6
267
Tumor
-0.6
431
Tumor
-0.6
664
Normal
-0.6
342
Normal
-0.6
464
Normal
-0.6
662
Normal
-0.6
426
Normal
-0.7
358
Normal
-0.7
564
Normal
-0.7
926
Normal
-0.7
698
Normal
-0.7
482
Normal
-0.7
112
Tumor
-0.8
648
Normal
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
