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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CBX3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
180.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
171.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
159.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
154.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
153.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
151.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
147.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
146.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
144.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
136.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
136.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
136.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
135.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
131.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
127.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
126.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
125.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
122.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
113.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
109.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
109.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
108.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
107.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
106.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
105.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
103.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
98.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
98.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
97.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
96.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
96.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
95.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
94.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
94.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
94.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
93.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
93.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
93.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
93.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
91.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
91.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
91.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
89.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
88.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
88.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
87.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
87.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
87.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
86.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
85.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
85.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
84.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
84.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
84.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
81.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
81.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
81.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
80.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
79.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
79.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
79.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
78.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
78.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
78.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
78.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
77.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
76.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
76.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
76.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
76.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
75.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
74.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
74.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
74.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
72.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
72.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
71.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
71.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
70.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
69.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
68.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
68.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
68.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
68.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
67.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
67.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
67.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
66.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
65.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
65.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
65.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
65.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
64.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
64.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
64.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
64.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
63.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
63.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
62.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
62.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
62.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
62.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
62.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
62.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
61.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
61.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
60.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
60.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
60.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
59.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
59.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
59.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
59.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
59.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
59.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
58.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
58.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
58.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
58.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
58.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
58.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
57.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
57.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
57.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
57.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
57.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
57.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
57.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
57.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
57.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
55.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
55.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
55.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
55.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
55.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
55.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
54.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
54.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
54.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
54.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
54.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
53.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
53.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
53.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
53.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
52.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
52.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
52.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
51.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
51.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
50.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
50.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
50.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
50.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
50.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
50.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
49.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
49.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
49.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
49.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
49.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
49.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
49.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
48.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
48.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
48.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
48.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
48.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
47.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
47.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
47.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
47.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
47.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
47.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
46.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
46.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
46.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
46.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
46.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
46.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
46.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
45.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
45.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
45.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
44.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
44.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
44.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
44.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
43.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
43.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
43.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
43.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
43.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
43.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
43.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
43.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
43.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
42.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
42.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
42.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
42.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
42.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
42.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
41.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
41.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
41.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
40.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
40.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
40.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
39.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
38.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
38.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
38.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
38.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
38.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
38.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
37.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
37.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
37.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
37.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
37.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
37.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
36.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
36.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
36.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
36.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
36.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
36.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
36.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
36.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
36.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
36.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
35.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
35.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
35.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
35.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
35.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
34.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
34.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
34.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
33.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
33.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
33.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
33.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
33.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
32.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
32.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
31.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
31.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
30.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
29.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
29.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
29.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
29.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
29.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
29.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
29.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
29.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
29.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
29.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
29.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
28.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
28.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
27.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
26.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
26.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
26.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
25.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
25.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
24.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
24.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
23.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
23.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
23.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
21.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
19.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CBX3 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
68.6
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
193.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
189.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
187.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
177.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
152.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
148.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
140.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
139.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
139.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
138.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
136.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
122.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
115.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
114.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
113.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
113.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
113.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
111.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
111.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
110.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
108.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
107.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
107.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
107.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
107.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
106.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
106.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
106.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
105.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
104.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
102.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
101.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
100.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
99.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
98.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
98.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
98.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
98.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
97.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
95.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
94.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
94.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
93.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
90.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
90.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
89.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
88.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
88.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
88.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
88.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
88.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
87.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
86.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
85.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
84.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
84.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
83.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
83.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
81.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
81.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
79.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
79.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
78.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
78.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
77.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
77.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
76.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
76.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
76.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
76.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
76.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
76.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
75.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
74.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
74.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
74.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
73.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
73.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
73.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
72.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
72.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
72.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
72.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
72.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
72.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
71.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
71.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
71.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
71.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
71.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
70.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
70.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
70.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
70.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
69.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
68.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
68.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
67.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
67.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
67.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
67.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
67.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
67.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
66.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
66.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
66.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
66.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
66.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
66.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
65.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
65.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
65.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
65.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
64.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
64.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
64.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
63.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
63.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
63.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
63.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
63.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
62.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
62.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
62.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
62.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
62.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
62.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
62.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
61.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
61.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
61.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
61.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
60.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
59.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
59.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
59.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
59.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
59.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
58.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
57.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
57.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
56.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
56.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
55.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
55.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
55.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
55.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
54.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
54.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
54.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
54.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
54.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
53.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
53.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
53.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
52.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
52.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
52.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
51.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
50.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
50.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
49.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
49.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
49.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
49.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
49.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
49.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
48.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
48.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
48.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
48.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
47.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
47.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
47.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
47.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
47.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
46.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
46.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
45.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
45.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
45.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
44.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
43.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
43.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
43.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
42.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
42.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
41.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
41.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
40.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
39.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
38.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
38.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
37.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
36.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
36.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
36.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
35.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
35.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
35.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
34.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
33.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
33.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
32.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
31.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
31.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
30.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
30.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
30.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
29.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
28.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
26.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
23.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
1.4
951
Tumor
1.0
497
Tumor
0.9
351
Tumor
0.9
517
Tumor
0.9
983
Tumor
0.8
817
Tumor
0.8
211
Tumor
0.8
1025
Tumor
0.8
131
Tumor
0.8
865
Tumor
0.8
967
Tumor
0.8
545
Tumor
0.8
425
Tumor
0.8
285
Tumor
0.7
523
Tumor
0.7
1031
Tumor
0.7
921
Tumor
0.6
661
Tumor
0.6
413
Tumor
0.6
965
Tumor
0.5
537
Tumor
0.5
331
Tumor
0.5
813
Tumor
0.5
411
Tumor
0.5
977
Tumor
0.5
463
Tumor
0.4
975
Tumor
0.4
1013
Tumor
0.4
213
Tumor
0.4
963
Tumor
0.4
695
Tumor
0.4
877
Tumor
0.4
553
Tumor
0.4
385
Tumor
0.4
355
Tumor
0.4
647
Tumor
0.4
1021
Tumor
0.4
814
Normal
0.4
881
Tumor
0.4
161
Tumor
0.4
125
Tumor
0.3
112
Tumor
0.3
493
Tumor
0.3
283
Tumor
0.3
473
Tumor
0.3
535
Tumor
0.3
715
Tumor
0.3
815
Tumor
0.3
943
Tumor
0.3
483
Tumor
0.3
917
Tumor
0.3
271
Tumor
0.3
953
Tumor
0.3
957
Tumor
0.3
277
Tumor
0.3
447
Tumor
0.3
727
Tumor
0.3
445
Tumor
0.3
467
Tumor
0.3
297
Tumor
0.3
343
Tumor
0.2
375
Tumor
0.2
923
Tumor
0.2
427
Tumor
0.2
525
Tumor
0.2
367
Tumor
0.2
443
Tumor
0.2
567
Tumor
0.2
671
Tumor
0.2
685
Tumor
0.2
431
Tumor
0.2
227
Tumor
0.2
737
Tumor
0.2
113
Tumor
0.2
471
Tumor
0.2
873
Tumor
0.2
724
Normal
0.1
573
Tumor
0.1
937
Tumor
0.1
491
Tumor
0.1
1041
Tumor
0.1
221
Tumor
0.1
492
Normal
0.1
171
Tumor
0.1
341
Tumor
0.1
851
Tumor
0.1
135
Tumor
0.1
363
Tumor
0.1
524
Normal
0.1
527
Tumor
0.1
641
Tumor
0.1
451
Tumor
0.1
538
Normal
0.1
433
Tumor
0.1
635
Tumor
0.1
383
Tumor
0.1
311
Tumor
0.1
217
Tumor
0.1
123
Tumor
0.1
147
Tumor
0.1
185
Tumor
0.0
223
Tumor
0.0
823
Tumor
0.0
267
Tumor
0.0
721
Tumor
0.0
313
Tumor
0.0
697
Tumor
0.0
515
Tumor
0.0
391
Tumor
0.0
415
Tumor
0.0
513
Tumor
0.0
966
Normal
0.0
533
Tumor
0.0
465
Tumor
0.0
478
Normal
0.0
455
Tumor
0.0
477
Tumor
0.0
1043
Tumor
0.0
665
Tumor
0.0
461
Tumor
0.0
536
Normal
0.0
357
Tumor
0.0
857
Tumor
0.0
487
Tumor
0.0
785
Tumor
-0.1
557
Tumor
-0.1
498
Normal
-0.1
861
Tumor
-0.1
393
Tumor
-0.1
268
Normal
-0.1
663
Tumor
-0.1
516
Normal
-0.1
435
Tumor
-0.1
261
Tumor
-0.1
978
Normal
-0.1
395
Tumor
-0.1
387
Tumor
-0.1
686
Normal
-0.1
434
Normal
-0.1
867
Tumor
-0.1
1015
Tumor
-0.1
127
Tumor
-0.1
984
Normal
-0.1
883
Tumor
-0.1
141
Tumor
-0.1
713
Tumor
-0.1
546
Normal
-0.1
958
Normal
-0.2
1027
Tumor
-0.2
1014
Normal
-0.2
617
Tumor
-0.2
212
Normal
-0.2
224
Normal
-0.2
1028
Normal
-0.2
444
Normal
-0.2
925
Tumor
-0.2
191
Tumor
-0.2
563
Tumor
-0.2
716
Normal
-0.2
915
Tumor
-0.2
954
Normal
-0.2
755
Tumor
-0.2
863
Tumor
-0.2
916
Normal
-0.2
192
Normal
-0.2
534
Normal
-0.2
423
Tumor
-0.2
714
Normal
-0.2
777
Tumor
-0.2
696
Normal
-0.2
364
Normal
-0.2
421
Tumor
-0.2
284
Normal
-0.2
1032
Normal
-0.2
257
Tumor
-0.2
126
Normal
-0.2
327
Tumor
-0.2
188
Normal
-0.2
964
Normal
-0.2
698
Normal
-0.2
976
Normal
-0.2
344
Normal
-0.2
913
Tumor
-0.3
938
Normal
-0.3
195
Tumor
-0.3
448
Normal
-0.3
412
Normal
-0.3
145
Tumor
-0.3
356
Normal
-0.3
187
Tumor
-0.3
874
Normal
-0.3
231
Tumor
-0.3
342
Normal
-0.3
142
Normal
-0.3
481
Tumor
-0.3
955
Tumor
-0.3
328
Normal
-0.3
878
Normal
-0.3
1045
Tumor
-0.3
722
Normal
-0.3
514
Normal
-0.3
528
Normal
-0.3
228
Normal
-0.3
137
Tumor
-0.3
484
Normal
-0.3
146
Normal
-0.3
464
Normal
-0.3
968
Normal
-0.3
416
Normal
-0.3
124
Normal
-0.3
884
Normal
-0.3
472
Normal
-0.3
926
Normal
-0.3
778
Normal
-0.3
138
Normal
-0.3
1016
Normal
-0.3
488
Normal
-0.3
554
Normal
-0.3
866
Normal
-0.3
1042
Normal
-0.3
361
Tumor
-0.3
384
Normal
-0.3
858
Normal
-0.3
852
Normal
-0.3
981
Tumor
-0.3
262
Normal
-0.3
386
Normal
-0.3
982
Normal
-0.4
1044
Normal
-0.4
494
Normal
-0.4
114
Normal
-0.4
662
Normal
-0.4
824
Normal
-0.4
756
Normal
-0.4
912
Normal
-0.4
474
Normal
-0.4
571
Tumor
-0.4
272
Normal
-0.4
1022
Normal
-0.4
738
Normal
-0.4
615
Tumor
-0.4
352
Normal
-0.4
924
Normal
-0.4
365
Tumor
-0.4
914
Normal
-0.4
944
Normal
-0.4
286
Normal
-0.4
956
Normal
-0.4
723
Tumor
-0.4
922
Normal
-0.4
482
Normal
-0.4
526
Normal
-0.4
518
Normal
-0.4
172
Normal
-0.4
744
Normal
-0.4
312
Normal
-0.4
864
Normal
-0.4
745
Tumor
-0.4
1046
Normal
-0.4
468
Normal
-0.4
746
Normal
-0.4
332
Normal
-0.4
362
Normal
-0.4
426
Normal
-0.4
136
Normal
-0.4
816
Normal
-0.4
862
Normal
-0.5
672
Normal
-0.5
353
Tumor
-0.5
258
Normal
-0.5
446
Normal
-0.5
462
Normal
-0.5
918
Normal
-0.5
742
Normal
-0.5
1026
Normal
-0.5
358
Normal
-0.5
111
Normal
-0.5
128
Normal
-0.5
456
Normal
-0.5
952
Normal
-0.5
422
Normal
-0.5
392
Normal
-0.5
664
Normal
-0.5
132
Normal
-0.5
368
Normal
-0.5
278
Normal
-0.5
218
Normal
-0.5
666
Normal
-0.5
186
Normal
-0.5
728
Normal
-0.5
376
Normal
-0.5
214
Normal
-0.5
414
Normal
-0.5
882
Normal
-0.5
232
Normal
-0.5
741
Tumor
-0.5
388
Normal
-0.5
558
Normal
-0.5
148
Normal
-0.5
818
Normal
-0.5
366
Normal
-0.5
786
Normal
-0.5
314
Normal
-0.5
162
Normal
-0.5
452
Normal
-0.5
298
Normal
-0.5
394
Normal
-0.5
396
Normal
-0.5
196
Normal
-0.5
424
Normal
-0.5
868
Normal
-0.6
466
Normal
-0.6
911
Tumor
-0.6
572
Normal
-0.6
436
Normal
-0.6
628
Normal
-0.6
428
Normal
-0.6
354
Normal
-0.6
636
Normal
-0.6
432
Normal
-0.6
574
Normal
-0.6
648
Normal
-0.6
222
Normal
-0.7
616
Normal
-0.7
618
Normal
-0.7
627
Tumor
-0.7
568
Normal
-0.7
564
Normal
-0.8
642
Normal
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
