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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZMIZ2 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
59.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
49.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
37.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
37.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
32.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
25.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
23.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
23.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
22.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
19.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
19.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
18.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
16.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
16.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
13.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
11.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
10.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
8.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ZMIZ2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.9
Number of samples
231
Samples
Sample
Description
TPM
DO45305
0 years, male, NA, stage:4, alive, 300 days
83.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
75.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
71.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
58.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
57.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
51.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
50.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
50.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
48.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
47.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
46.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
46.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
46.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
45.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
43.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
43.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
39.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
39.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
35.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
35.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
34.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
33.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
32.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
31.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
31.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
31.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
28.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
25.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
24.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
23.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
23.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
23.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
22.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
21.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
21.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
19.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
18.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
18.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
16.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
15.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
13.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
12.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
277
Tumor
0.8
465
Tumor
0.8
817
Tumor
0.8
1025
Tumor
0.8
483
Tumor
0.8
427
Tumor
0.8
473
Tumor
0.7
951
Tumor
0.7
523
Tumor
0.7
661
Tumor
0.7
443
Tumor
0.7
271
Tumor
0.7
343
Tumor
0.7
957
Tumor
0.6
921
Tumor
0.6
444
Normal
0.6
497
Tumor
0.6
515
Tumor
0.6
525
Tumor
0.6
785
Tumor
0.6
446
Normal
0.6
131
Tumor
0.6
432
Normal
0.6
433
Tumor
0.6
425
Tumor
0.6
431
Tumor
0.5
267
Tumor
0.5
331
Tumor
0.5
647
Tumor
0.5
355
Tumor
0.5
755
Tumor
0.5
1041
Tumor
0.5
445
Tumor
0.5
743
Tumor
0.4
231
Tumor
0.4
141
Tumor
0.4
466
Normal
0.4
685
Tumor
0.4
423
Tumor
0.4
533
Tumor
0.4
535
Tumor
0.4
937
Tumor
0.4
493
Tumor
0.4
313
Tumor
0.4
413
Tumor
0.4
434
Normal
0.4
1021
Tumor
0.4
435
Tumor
0.4
975
Tumor
0.4
491
Tumor
0.4
721
Tumor
0.4
977
Tumor
0.4
147
Tumor
0.4
477
Tumor
0.4
221
Tumor
0.4
297
Tumor
0.4
436
Normal
0.4
135
Tumor
0.4
411
Tumor
0.4
516
Normal
0.4
421
Tumor
0.4
357
Tumor
0.4
777
Tumor
0.3
965
Tumor
0.3
161
Tumor
0.3
261
Tumor
0.3
1031
Tumor
0.3
468
Normal
0.3
257
Tumor
0.3
222
Normal
0.3
737
Tumor
0.3
471
Tumor
0.3
518
Normal
0.3
492
Normal
0.3
367
Tumor
0.3
375
Tumor
0.3
456
Normal
0.3
452
Normal
0.3
861
Tumor
0.3
671
Tumor
0.3
963
Tumor
0.3
464
Normal
0.3
881
Tumor
0.3
363
Tumor
0.3
813
Tumor
0.3
213
Tumor
0.3
185
Tumor
0.3
526
Normal
0.2
1027
Tumor
0.2
823
Tumor
0.2
218
Normal
0.2
376
Normal
0.2
865
Tumor
0.2
967
Tumor
0.2
214
Normal
0.2
211
Tumor
0.2
123
Tumor
0.2
713
Tumor
0.2
983
Tumor
0.2
368
Normal
0.2
1043
Tumor
0.2
666
Normal
0.2
697
Tumor
0.2
557
Tumor
0.2
524
Normal
0.2
393
Tumor
0.2
925
Tumor
0.2
487
Tumor
0.2
883
Tumor
0.2
125
Tumor
0.2
415
Tumor
0.2
137
Tumor
0.2
385
Tumor
0.2
461
Tumor
0.2
472
Normal
0.2
365
Tumor
0.2
663
Tumor
0.2
953
Tumor
0.2
517
Tumor
0.2
924
Normal
0.1
422
Normal
0.1
196
Normal
0.1
814
Normal
0.1
366
Normal
0.1
534
Normal
0.1
341
Tumor
0.1
545
Tumor
0.1
851
Tumor
0.1
387
Tumor
0.1
943
Tumor
0.1
923
Tumor
0.1
395
Tumor
0.1
426
Normal
0.1
171
Tumor
0.1
664
Normal
0.1
285
Tumor
0.1
877
Tumor
0.1
572
Normal
0.1
746
Normal
0.1
351
Tumor
0.1
635
Tumor
0.1
124
Normal
0.1
1015
Tumor
0.1
172
Normal
0.1
268
Normal
0.1
262
Normal
0.1
327
Tumor
0.1
223
Tumor
0.1
567
Tumor
0.0
564
Normal
0.0
217
Tumor
0.0
514
Normal
0.0
362
Normal
0.0
428
Normal
0.0
258
Normal
0.0
915
Tumor
0.0
918
Normal
0.0
342
Normal
0.0
224
Normal
0.0
913
Tumor
0.0
1028
Normal
0.0
283
Tumor
0.0
383
Tumor
0.0
126
Normal
0.0
447
Tumor
0.0
537
Tumor
0.0
344
Normal
0.0
615
Tumor
0.0
358
Normal
0.0
695
Tumor
0.0
513
Tumor
0.0
981
Tumor
0.0
424
Normal
N/A
354
Normal
0.0
686
Normal
0.0
952
Normal
0.0
745
Tumor
0.0
186
Normal
0.0
665
Tumor
0.0
272
Normal
0.0
482
Normal
0.0
538
Normal
0.0
815
Tumor
0.0
148
Normal
0.0
353
Tumor
0.0
188
Normal
0.0
128
Normal
0.0
414
Normal
0.0
911
Tumor
0.0
571
Tumor
0.0
1013
Tumor
0.0
192
Normal
0.0
926
Normal
0.0
672
Normal
0.0
187
Tumor
0.0
113
Tumor
0.0
546
Normal
0.0
474
Normal
-0.1
554
Normal
-0.1
311
Tumor
-0.1
396
Normal
-0.1
878
Normal
-0.1
662
Normal
-0.1
392
Normal
-0.1
232
Normal
-0.1
284
Normal
-0.1
867
Tumor
-0.1
462
Normal
-0.1
484
Normal
-0.1
388
Normal
-0.1
1026
Normal
-0.1
352
Normal
-0.1
228
Normal
-0.1
573
Tumor
-0.1
278
Normal
-0.1
227
Tumor
-0.1
416
Normal
-0.1
394
Normal
-0.1
312
Normal
-0.1
467
Tumor
-0.1
114
Normal
-0.1
916
Normal
-0.1
112
Tumor
-0.1
488
Normal
-0.1
212
Normal
-0.1
866
Normal
-0.1
111
Normal
-0.1
528
Normal
-0.1
391
Tumor
-0.1
862
Normal
-0.1
162
Normal
-0.1
127
Tumor
-0.1
968
Normal
-0.1
741
Tumor
-0.1
857
Tumor
-0.1
384
Normal
-0.1
138
Normal
-0.1
286
Normal
-0.1
1032
Normal
-0.1
922
Normal
-0.1
618
Normal
-0.1
463
Tumor
-0.1
744
Normal
-0.1
696
Normal
-0.1
917
Tumor
-0.1
982
Normal
-0.1
1016
Normal
-0.1
568
Normal
-0.2
478
Normal
-0.2
142
Normal
-0.2
873
Tumor
-0.2
498
Normal
-0.2
956
Normal
-0.2
648
Normal
-0.2
146
Normal
-0.2
195
Tumor
-0.2
786
Normal
-0.2
481
Tumor
-0.2
958
Normal
-0.2
191
Tumor
-0.2
553
Tumor
-0.2
412
Normal
-0.2
356
Normal
-0.2
727
Tumor
-0.2
738
Normal
-0.2
864
Normal
-0.2
455
Tumor
-0.2
1042
Normal
-0.2
386
Normal
-0.2
724
Normal
-0.2
756
Normal
-0.2
494
Normal
-0.2
1014
Normal
-0.2
536
Normal
-0.2
984
Normal
-0.2
742
Normal
-0.2
716
Normal
-0.2
715
Tumor
-0.2
527
Tumor
-0.2
628
Normal
-0.3
914
Normal
-0.3
874
Normal
-0.3
574
Normal
-0.3
563
Tumor
-0.3
361
Tumor
-0.3
641
Tumor
-0.3
145
Tumor
-0.3
617
Tumor
-0.3
868
Normal
-0.3
976
Normal
-0.3
778
Normal
-0.3
882
Normal
-0.3
1022
Normal
-0.3
964
Normal
-0.3
966
Normal
-0.3
978
Normal
-0.3
714
Normal
-0.3
955
Tumor
-0.3
558
Normal
-0.3
722
Normal
-0.3
364
Normal
-0.3
328
Normal
-0.3
298
Normal
-0.3
616
Normal
-0.4
332
Normal
-0.4
642
Normal
-0.4
314
Normal
-0.4
1045
Tumor
-0.4
728
Normal
-0.4
944
Normal
-0.4
863
Tumor
-0.4
132
Normal
-0.4
954
Normal
-0.5
858
Normal
-0.5
723
Tumor
-0.5
448
Normal
-0.5
938
Normal
-0.5
816
Normal
-0.6
627
Tumor
-0.6
824
Normal
-0.6
698
Normal
-0.6
136
Normal
-0.6
1044
Normal
-0.6
852
Normal
-0.6
636
Normal
-0.7
818
Normal
-0.8
1046
Normal
-0.8
884
Normal
-0.8
451
Tumor
-0.8
912
Normal
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
