MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.6 nTPM
HPA Brain:6.0 nTPM
GTEx:2.6 nTPM
FANTOM5:0.7 Scaled Tags Per Million
Pig:3.8 nTPM
Mouse:0.0 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 6.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4.2
1827 Male, age 72, unknown 7.2
2019 Male, age 18, unknown 6.1
2828 Female, age 72, unknown 5.0
2219 Male, age 76, both hemispheres 4.7
2411 Female, age 72, unknown 3.9
1830 Male, age 51, unknown 3.5
2666 Male, age 74, left hemisphere 3.2
1870 Female, age 42, unknown 3.1
1833 Male, age 53, unknown 3.0
2586 Male, age 75, left hemisphere 2.4
Dorsal raphe nucleus
nTPM: 2.8
2750 Male, age 76, both hemispheres 3.7
2298 Female, age 72, unknown 3.0
1828 Male, age 53, unknown 2.8
2016 Female, age 72, unknown 2.6
2047 Male, age 72, unknown 1.9
Inferior colliculus
nTPM: 4.4
1890 Male, age 53, unknown 6.6
2097 Female, age 72, unknown 5.3
1848 Female, age 42, unknown 3.2
2849 Male, age 72, unknown 2.5
Median raphe nucleus
nTPM: 3.4
2220 Male, age 76, midline 3.4
Periaquaductal grey, anterior
nTPM: 3.1
1795 Male, age 51, unknown 4.0
2502 Female, age 75, unknown 3.5
1947 Male, age 18, unknown 1.8
Periaquaductal grey, dorsal
nTPM: 3.4
1831 Male, age 72, unknown 4.4
2464 Female, age 72, unknown 3.9
2850 Male, age 76, both hemispheres 3.0
1840 Male, age 53, unknown 2.4
Periaquaductal grey, lateral
nTPM: 3.9
2053 Male, age 18, unknown 5.0
2140 Male, age 76, both hemispheres 3.3
2272 Male, age 74, both hemispheres 3.2
Pretectal area
nTPM: 6.0
1816 Male, age 51, unknown 11.4
1944 Female, age 72, unknown 9.9
1815 Male, age 53, unknown 8.4
2007 Male, age 72, unknown 8.4
1817 Female, age 42, unknown 6.5
2316 Male, age 76, right hemisphere 5.0
2667 Female, age 75, unknown 4.2
2273 Male, age 74, both hemispheres 3.2
2224 Female, age 72, unknown 3.1
2825 Male, age 18, unknown 2.9
2407 Male, age 75, both hemispheres 2.8
Red nucleus
nTPM: 4.6
2823 Male, age 76, right hemisphere 6.3
2785 Male, age 18, unknown 5.7
2503 Female, age 72, unknown 5.4
2725 Female, age 75, unknown 5.4
2588 Male, age 74, left hemisphere 5.0
1821 Female, age 72, unknown 4.6
1904 Male, age 53, unknown 4.3
1954 Female, age 42, unknown 4.3
1865 Male, age 51, unknown 3.7
2227 Male, age 72, unknown 3.7
2584 Male, age 75, left hemisphere 3.7
2769 Male, age 72, unknown 3.4
Substantia nigra
nTPM: 4.0
1889 Female, age 72, unknown 7.1
2409 Female, age 72, unknown 5.1
1916 Female, age 42, unknown 4.5
2583 Male, age 75, right hemisphere 4.0
2241 Male, age 72, unknown 3.9
2665 Male, age 74, both hemispheres 3.6
1851 Male, age 51, unknown 3.4
2590 Female, age 75, unknown 3.1
1941 Male, age 53, unknown 2.9
2699 Male, age 18, unknown 2.8
Superior colliculus
nTPM: 5.2
2087 Female, age 72, unknown 7.8
2261 Male, age 18, unknown 7.3
1913 Female, age 42, unknown 6.4
2668 Female, age 75, unknown 5.8
1796 Male, age 53, unknown 5.2
1995 Male, age 72, unknown 4.9
2587 Male, age 74, left hemisphere 4.3
1895 Male, age 76, right hemisphere 4.1
1839 Male, age 51, unknown 3.3
2664 Male, age 75, both hemispheres 2.9
Ventral tegmental area
nTPM: 4.0
2410 Female, age 72, unknown 5.1
2218 Male, age 76, both hemispheres 4.8
1915 Female, age 42, unknown 3.9
2021 Male, age 53, unknown 3.7
2223 Female, age 72, unknown 3.4
1942 Male, age 51, unknown 3.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.6
Samples: 139

Max nTPM: 6.8
Min nTPM: 0.6
Std nTPM: 1.1
Median nTPM: 2.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 6.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 6.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 6.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 4.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 4.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 4.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 4.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 4.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 4.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 4.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 4.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.7
FF:10158-103A5 76 years, female 0.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 3.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.7
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.6
Sample A Female 0.8
Sample B Female 0.6
Sample C Male 0.7
Sample D Male 0.8
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 7.1
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 0.9
Sample C Male 7.1
Sample D Male 3.8
Periaqueductal gray
nTPM: 0.6
Samples: 3

Max nTPM: 0.8
Min nTPM: 0.4
Sample B Female 0.8
Sample C Male 0.4
Sample D Male 0.6
Superior colliculi
nTPM: 3.8
Samples: 4

Max nTPM: 6.2
Min nTPM: 1.5
Sample A Female 6.2
Sample B Female 1.8
Sample C Male 5.8
Sample D Male 1.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.1

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