HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
RNA expressioni
Consensus:7.6 nTPM
HPA Brain:46.9 nTPM
GTEx:7.6 nTPM
FANTOM5:32.6 Scaled Tags Per Million
Pig:13.0 nTPM
Mouse:6.4 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028020Antibody HPA028095Antibody HPA028333
Glial cells Not detectedNot detectedLow
Neuronal cells LowLow-






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 46.9
Sample id Sample description nTPM
Hippocampus
nTPM: 38.4
1911 Female, age 85, right hemisphere 45.2
2148 Female, age 91, left hemisphere 43.5
1855 Male, age 76, left hemisphere 37.8
2621 Female, age 67, right hemisphere 37.2
1898 Male, age 80, left hemisphere 36.4
2529 Female, age 94, left hemisphere 30.3
Dentate gyrus
nTPM: 39.4
1927 Female, age 91, both hemispheres 49.0
2531 Female, age 67, both hemispheres 41.6
2246 Female, age 85, both hemispheres 40.8
2528 Male, age 74, both hemispheres 39.6
2010 Male, age 76, both hemispheres 35.2
2530 Female, age 94, left hemisphere 30.2
Entorhinal gyrus
nTPM: 40.7
1938 Female, age 85, left hemisphere 48.4
2613 Female, age 94, left hemisphere 46.1
2686 Male, age 75, right hemisphere 41.5
2764 Male, age 80, right hemisphere 38.6
1787 Male, age 76, left hemisphere 36.0
2117 Female, age 91, right hemisphere 33.3
Hippocampus, CA1
nTPM: 40.2
2082 Female, age 91, right hemisphere 45.3
1873 Female, age 85, both hemispheres 42.8
2045 Male, age 76, both hemispheres 41.4
2527 Male, age 74, both hemispheres 35.8
2749 Male, age 80, left hemisphere 35.7
Hippocampus, CA2
nTPM: 40.1
1940 Female, age 85, left hemisphere 45.1
2113 Female, age 91, right hemisphere 43.8
2249 Male, age 74, both hemispheres 40.7
1892 Male, age 76, both hemispheres 38.5
2437 Female, age 94, left hemisphere 37.1
1963 Male, age 80, left hemisphere 35.2
Hippocampus, CA3
nTPM: 42.0
2137 Male, age 80, left hemisphere 50.4
2620 Female, age 94, left hemisphere 45.9
2436 Male, age 74, both hemispheres 41.7
1891 Female, age 85, both hemispheres 39.7
1867 Male, age 76, both hemispheres 37.3
2861 Female, age 67, both hemispheres 36.8
Parahippocampal cortex
nTPM: 44.9
2693 Female, age 94, both hemispheres 52.6
2532 Female, age 72, left hemisphere 49.5
1933 Female, age 85, both hemispheres 49.2
1850 Male, age 80, both hemispheres 48.0
2622 Female, age 67, right hemisphere 47.4
2250 Female, age 67, right hemisphere 47.2
2245 Female, age 91, both hemispheres 43.1
1990 Female, age 91, right hemisphere 41.0
2692 Male, age 74, both hemispheres 38.8
2018 Male, age 76, both hemispheres 32.3
Perirhinal gyrus
nTPM: 46.9
1841 Female, age 85, right hemisphere 52.9
2848 Male, age 76, right hemisphere 48.5
2521 Female, age 94, right hemisphere 45.8
1847 Female, age 91, left hemisphere 45.2
1794 Male, age 80, right hemisphere 42.3
Subiculum
nTPM: 38.7
2438 Female, age 94, left hemisphere 46.2
2729 Female, age 91, right hemisphere 41.9
1901 Male, age 80, both hemispheres 39.9
1977 Female, age 85, both hemispheres 36.4
2619 Male, age 74, both hemispheres 36.1
2042 Male, age 76, both hemispheres 31.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 7.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 7.6
Samples: 197

Max nTPM: 17.8
Min nTPM: 2.6
Std nTPM: 2.3
Median nTPM: 7.4
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 17.8
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 17.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 17.0
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 13.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 12.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 12.8
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 12.2
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 11.4
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 11.3
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 11.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 11.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 32.6
FF:10169-103B7 60 years, female 37.3
FF:10153-102I9 76 years, female 27.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 13.0
Pig sample Sample description nTPM
Subiculum
nTPM: 11.6
Samples: 4

Max nTPM: 12.1
Min nTPM: 10.5
Sample A Female 10.5
Sample B Female 12.0
Sample C Male 11.8
Sample D Male 12.1
Dorsal hippocampus
nTPM: 13.0
Samples: 4

Max nTPM: 14.9
Min nTPM: 11.7
Sample A Female 12.9
Sample B Female 11.7
Sample C Male 14.9
Sample D Male 12.5
Entorhinal cortex
nTPM: 12.2
Samples: 4

Max nTPM: 14.2
Min nTPM: 10.7
Sample A Female 10.7
Sample B Female 14.2
Sample C Male 11.1
Sample D Male 12.9
Ventral hippocampus
nTPM: 12.0
Samples: 4

Max nTPM: 12.7
Min nTPM: 10.7
Sample A Female 12.6
Sample B Female 11.9
Sample C Male 10.7
Sample D Male 12.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 6.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.4
Samples: 4

Max nTPM: 8.8
Min nTPM: 2.1
Sample A Male 5.3
Sample B Male 8.8
Sample C Female 5.4
Sample D Female 2.1
Hippocampal formation
nTPM: 6.4
Samples: 4

Max nTPM: 7.2
Min nTPM: 5.3
Sample A Male 6.5
Sample B Male 6.5
Sample C Female 5.3
Sample D Female 7.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
68341746 Antisense, RP_041207_02_B03, Mouse strain C57BL/6J (56 days, male) 0.7

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