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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRXL2A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
93.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
337.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
312.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
286.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
284.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
281.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
268.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
250.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
240.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
234.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
233.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
229.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
224.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
223.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
222.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
214.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
207.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
206.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
200.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
196.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
193.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
193.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
192.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
191.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
190.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
188.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
186.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
183.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
178.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
173.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
172.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
172.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
171.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
171.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
171.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
168.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
168.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
166.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
165.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
164.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
160.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
159.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
158.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
157.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
153.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
152.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
152.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
152.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
148.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
148.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
148.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
147.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
145.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
145.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
144.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
144.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
144.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
143.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
141.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
141.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
140.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
140.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
139.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
138.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
137.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
136.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
135.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
134.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
133.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
133.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
132.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
132.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
131.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
129.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
127.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
127.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
126.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
126.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
126.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
126.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
126.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
125.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
123.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
122.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
122.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
122.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
121.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
120.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
120.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
120.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
120.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
120.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
119.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
118.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
118.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
118.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
117.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
117.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
116.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
116.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
116.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
115.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
115.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
114.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
113.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
113.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
112.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
112.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
112.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
109.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
109.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
109.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
109.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
108.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
108.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
108.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
108.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
107.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
106.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
106.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
105.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
105.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
105.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
104.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
104.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
104.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
103.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
102.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
102.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
101.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
101.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
100.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
100.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
100.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
100.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
99.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
99.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
99.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
99.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
99.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
98.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
98.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
98.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
98.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
97.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
97.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
97.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
96.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
96.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
96.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
95.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
95.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
95.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
94.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
94.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
93.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
93.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
92.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
91.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
91.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
90.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
89.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
89.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
89.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
88.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
87.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
87.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
86.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
86.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
86.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
86.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
86.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
85.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
85.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
85.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
85.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
84.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
83.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
83.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
83.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
82.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
82.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
82.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
82.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
82.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
81.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
81.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
81.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
81.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
81.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
80.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
80.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
80.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
79.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
79.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
77.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
77.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
76.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
76.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
76.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
75.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
75.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
75.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
74.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
74.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
73.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
73.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
73.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
73.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
73.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
72.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
72.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
71.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
71.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
71.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
71.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
70.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
70.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
70.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
70.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
69.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
69.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
69.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
69.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
68.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
68.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
67.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
67.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
67.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
67.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
66.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
66.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
66.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
66.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
66.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
65.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
65.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
65.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
64.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
64.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
64.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
63.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
63.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
63.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
63.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
63.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
62.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
62.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
62.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
62.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
62.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
62.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
61.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
61.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
61.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
60.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
59.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
58.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
58.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
58.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
57.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
57.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
56.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
55.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
55.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
55.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
55.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
54.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
54.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
54.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
53.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
53.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
53.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
53.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
52.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
52.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
52.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
51.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
51.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
51.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
51.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
50.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
50.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
49.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
49.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
49.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
49.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
48.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
47.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
47.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
47.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
46.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
46.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
45.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
45.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
44.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
43.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
43.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
42.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
42.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
41.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
40.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
39.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
39.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
39.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
39.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
38.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
36.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
35.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
35.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
35.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
30.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
29.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
29.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
27.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
27.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
26.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
24.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
23.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
477
Tumor
2.2
435
Tumor
1.5
553
Tumor
1.4
1043
Tumor
1.4
1027
Tumor
1.3
363
Tumor
1.1
915
Tumor
1.1
147
Tumor
1.0
423
Tumor
1.0
921
Tumor
1.0
231
Tumor
1.0
466
Normal
0.9
755
Tumor
0.9
257
Tumor
0.9
695
Tumor
0.9
857
Tumor
0.8
714
Normal
0.8
647
Tumor
0.8
534
Normal
0.7
465
Tumor
0.7
462
Normal
0.7
271
Tumor
0.7
494
Normal
0.7
1032
Normal
0.7
882
Normal
0.7
1014
Normal
0.7
977
Tumor
0.7
171
Tumor
0.6
172
Normal
0.6
421
Tumor
0.6
356
Normal
0.6
648
Normal
0.6
925
Tumor
0.6
937
Tumor
0.6
1025
Tumor
0.6
616
Normal
0.6
422
Normal
0.6
785
Tumor
0.6
866
Normal
0.5
361
Tumor
0.5
1021
Tumor
0.5
533
Tumor
0.5
858
Normal
0.5
455
Tumor
0.5
424
Normal
0.5
484
Normal
0.5
911
Tumor
0.5
685
Tumor
0.4
746
Normal
0.4
196
Normal
0.4
978
Normal
0.4
868
Normal
0.4
778
Normal
0.4
938
Normal
0.4
443
Tumor
0.4
436
Normal
0.4
618
Normal
0.4
492
Normal
0.4
741
Tumor
0.4
926
Normal
0.4
922
Normal
0.4
132
Normal
0.4
686
Normal
0.4
328
Normal
0.4
563
Tumor
0.4
518
Normal
0.3
742
Normal
0.3
537
Tumor
0.3
162
Normal
0.3
1016
Normal
0.3
1046
Normal
0.3
472
Normal
0.3
567
Tumor
0.3
341
Tumor
0.3
878
Normal
0.3
528
Normal
0.3
728
Normal
0.3
471
Tumor
0.3
696
Normal
0.3
1026
Normal
0.3
414
Normal
0.3
517
Tumor
0.3
526
Normal
0.3
912
Normal
0.2
513
Tumor
0.2
756
Normal
0.2
883
Tumor
0.2
918
Normal
0.2
786
Normal
0.2
546
Normal
0.2
862
Normal
0.2
136
Normal
0.2
864
Normal
0.2
148
Normal
0.2
976
Normal
0.2
1022
Normal
0.2
488
Normal
0.2
968
Normal
0.2
258
Normal
0.2
723
Tumor
0.2
564
Normal
0.2
738
Normal
0.2
818
Normal
0.2
114
Normal
0.2
481
Tumor
0.2
482
Normal
0.2
824
Normal
0.2
222
Normal
0.2
474
Normal
0.2
468
Normal
0.2
881
Tumor
0.2
483
Tumor
0.2
615
Tumor
0.2
698
Normal
0.2
358
Normal
0.1
212
Normal
0.1
127
Tumor
0.1
314
Normal
0.1
262
Normal
0.1
816
Normal
0.1
745
Tumor
0.1
464
Normal
0.1
944
Normal
0.1
558
Normal
0.1
286
Normal
0.1
554
Normal
0.1
221
Tumor
0.1
312
Normal
0.1
412
Normal
0.1
431
Tumor
0.1
964
Normal
0.1
954
Normal
0.1
277
Tumor
0.1
744
Normal
0.1
111
Normal
0.1
916
Normal
0.1
342
Normal
0.1
186
Normal
0.1
272
Normal
0.1
924
Normal
0.1
664
Normal
0.1
1044
Normal
0.1
851
Tumor
0.1
142
Normal
0.1
452
Normal
0.1
376
Normal
0.1
514
Normal
0.1
298
Normal
0.1
1028
Normal
0.1
267
Tumor
0.1
955
Tumor
0.1
716
Normal
0.0
572
Normal
0.0
884
Normal
0.0
135
Tumor
0.0
951
Tumor
0.0
433
Tumor
0.0
138
Normal
0.0
112
Tumor
0.0
923
Tumor
0.0
128
Normal
0.0
428
Normal
0.0
451
Tumor
0.0
432
Normal
0.0
392
Normal
0.0
727
Tumor
0.0
232
Normal
0.0
641
Tumor
0.0
261
Tumor
0.0
227
Tumor
0.0
722
Normal
0.0
448
Normal
0.0
478
Normal
0.0
984
Normal
0.0
852
Normal
0.0
416
Normal
0.0
426
Normal
0.0
982
Normal
0.0
123
Tumor
0.0
284
Normal
0.0
877
Tumor
0.0
357
Tumor
0.0
963
Tumor
-0.1
445
Tumor
-0.1
278
Normal
-0.1
628
Normal
-0.1
817
Tumor
-0.1
815
Tumor
-0.1
491
Tumor
-0.1
195
Tumor
-0.1
777
Tumor
-0.1
568
Normal
-0.1
956
Normal
-0.1
642
Normal
-0.1
228
Normal
-0.1
1031
Tumor
-0.1
952
Normal
-0.1
362
Normal
-0.1
1042
Normal
-0.1
867
Tumor
-0.1
953
Tumor
-0.1
366
Normal
-0.1
327
Tumor
-0.1
364
Normal
-0.1
662
Normal
-0.1
914
Normal
-0.1
354
Normal
-0.1
415
Tumor
-0.1
388
Normal
-0.1
538
Normal
-0.1
394
Normal
-0.1
958
Normal
-0.1
861
Tumor
-0.1
355
Tumor
-0.1
571
Tumor
-0.1
387
Tumor
-0.2
352
Normal
-0.2
268
Normal
-0.2
873
Tumor
-0.2
981
Tumor
-0.2
384
Normal
-0.2
874
Normal
-0.2
473
Tumor
-0.2
636
Normal
-0.2
368
Normal
-0.2
365
Tumor
-0.2
332
Normal
-0.2
351
Tumor
-0.2
411
Tumor
-0.2
185
Tumor
-0.2
515
Tumor
-0.2
446
Normal
-0.2
574
Normal
-0.3
525
Tumor
-0.3
666
Normal
-0.3
214
Normal
-0.3
125
Tumor
-0.3
391
Tumor
-0.3
444
Normal
-0.3
413
Tumor
-0.3
131
Tumor
-0.3
493
Tumor
-0.3
456
Normal
-0.3
966
Normal
-0.3
224
Normal
-0.3
367
Tumor
-0.3
1045
Tumor
-0.4
218
Normal
-0.4
146
Normal
-0.4
536
Normal
-0.4
715
Tumor
-0.4
1041
Tumor
-0.4
957
Tumor
-0.4
498
Normal
-0.4
188
Normal
-0.4
516
Normal
-0.4
557
Tumor
-0.4
124
Normal
-0.4
126
Normal
-0.4
1013
Tumor
-0.5
523
Tumor
-0.5
145
Tumor
-0.5
434
Normal
-0.5
863
Tumor
-0.5
396
Normal
-0.5
743
Tumor
-0.5
737
Tumor
-0.5
672
Normal
-0.5
313
Tumor
-0.5
297
Tumor
-0.5
635
Tumor
-0.5
975
Tumor
-0.5
461
Tumor
-0.5
344
Normal
-0.5
113
Tumor
-0.6
823
Tumor
-0.6
713
Tumor
-0.6
983
Tumor
-0.6
865
Tumor
-0.6
524
Normal
-0.6
192
Normal
-0.6
697
Tumor
-0.7
627
Tumor
-0.7
617
Tumor
-0.7
527
Tumor
-0.7
447
Tumor
-0.7
353
Tumor
-0.7
1015
Tumor
-0.7
545
Tumor
-0.7
285
Tumor
-0.8
161
Tumor
-0.8
213
Tumor
-0.8
393
Tumor
-0.8
386
Normal
-0.8
137
Tumor
-0.8
535
Tumor
-0.8
967
Tumor
-0.8
671
Tumor
-0.8
665
Tumor
-0.9
721
Tumor
-0.9
217
Tumor
-0.9
141
Tumor
-0.9
814
Normal
-0.9
187
Tumor
-0.9
813
Tumor
-1.0
191
Tumor
-1.0
331
Tumor
-1.0
427
Tumor
-1.0
375
Tumor
-1.0
724
Normal
-1.0
965
Tumor
-1.1
343
Tumor
-1.1
661
Tumor
-1.1
223
Tumor
-1.1
463
Tumor
-1.1
467
Tumor
-1.1
425
Tumor
-1.2
917
Tumor
-1.2
943
Tumor
-1.2
497
Tumor
-1.4
383
Tumor
-1.4
385
Tumor
-1.4
913
Tumor
-1.4
573
Tumor
-1.4
487
Tumor
-1.4
311
Tumor
-1.5
283
Tumor
-1.5
663
Tumor
-1.6
395
Tumor
-1.8
211
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.