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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLG is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
341.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1775.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1387.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1223.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1208.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1158.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1149.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1095.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1053.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1039.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1033.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1030.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1013.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
995.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
989.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
985.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
915.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
909.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
889.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
886.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
884.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
879.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
863.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
845.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
844.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
837.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
833.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
828.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
825.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
800.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
785.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
785.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
784.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
775.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
775.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
773.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
763.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
753.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
740.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
739.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
737.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
735.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
731.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
717.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
716.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
715.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
714.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
704.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
704.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
702.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
696.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
686.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
684.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
680.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
679.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
674.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
671.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
669.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
666.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
662.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
660.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
660.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
658.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
652.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
642.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
633.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
631.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
630.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
628.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
627.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
619.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
617.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
614.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
609.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
589.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
588.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
587.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
565.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
556.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
553.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
544.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
520.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
518.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
503.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
495.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
491.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
487.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
485.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
478.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
474.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
469.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
466.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
465.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
463.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
461.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
453.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
453.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
452.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
447.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
444.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
442.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
438.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
438.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
438.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
438.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
435.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
429.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
427.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
419.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
419.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
414.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
412.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
412.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
411.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
408.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
402.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
397.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
397.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
396.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
395.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
393.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
391.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
377.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
376.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
375.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
373.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
372.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
370.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
368.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
367.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
365.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
362.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
362.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
361.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
360.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
358.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
355.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
354.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
352.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
350.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
347.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
343.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
341.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
341.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
339.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
339.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
338.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
336.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
331.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
329.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
329.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
328.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
325.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
324.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
324.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
321.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
320.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
311.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
309.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
309.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
306.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
305.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
305.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
303.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
298.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
297.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
297.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
295.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
293.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
291.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
290.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
287.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
286.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
284.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
278.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
277.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
272.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
272.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
272.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
271.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
271.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
270.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
268.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
265.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
265.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
263.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
261.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
255.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
255.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
246.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
243.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
243.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
242.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
241.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
241.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
236.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
235.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
234.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
234.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
233.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
233.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
228.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
224.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
224.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
223.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
222.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
221.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
220.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
220.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
219.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
219.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
219.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
218.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
215.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
213.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
211.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
210.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
208.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
207.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
204.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
200.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
200.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
200.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
197.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
197.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
196.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
195.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
195.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
193.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
193.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
191.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
190.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
186.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
183.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
182.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
179.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
178.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
175.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
175.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
175.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
173.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
173.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
173.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
172.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
167.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
167.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
166.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
165.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
163.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
163.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
163.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
163.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
161.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
159.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
156.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
156.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
156.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
150.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
147.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
146.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
140.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
140.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
139.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
136.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
135.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
134.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
134.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
126.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
126.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
120.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
118.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
117.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
116.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
116.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
115.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
114.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
113.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
112.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
112.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
110.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
109.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
108.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
103.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
102.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
101.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
101.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
99.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
97.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
97.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
95.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
95.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
94.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
91.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
91.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
91.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
90.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
89.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
88.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
88.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
84.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
82.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
81.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
79.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
78.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
75.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
72.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
69.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
67.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
67.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
66.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
66.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
65.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
62.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
55.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
54.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
53.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
45.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
43.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
41.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
39.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
38.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
38.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
37.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
37.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
35.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
33.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
31.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
31.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
27.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
24.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
15.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
4.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
1.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLG is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
367.5
Number of samples
231
Samples
Sample
Description
TPM
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1865.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
1417.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
1329.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
1318.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
1294.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1269.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1178.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1162.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
1149.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
1092.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1060.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
1028.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
997.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
987.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
980.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
978.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
972.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
933.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
930.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
923.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
890.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
846.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
834.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
814.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
798.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
782.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
746.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
744.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
720.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
710.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
702.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
699.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
688.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
682.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
676.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
673.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
671.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
671.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
667.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
638.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
611.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
610.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
604.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
594.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
582.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
582.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
570.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
566.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
561.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
560.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
554.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
552.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
552.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
542.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
536.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
535.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
528.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
510.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
508.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
503.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
498.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
495.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
490.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
474.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
467.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
466.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
464.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
456.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
456.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
454.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
451.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
445.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
438.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
433.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
431.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
425.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
423.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
418.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
415.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
413.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
409.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
408.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
408.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
407.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
404.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
404.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
401.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
386.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
386.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
374.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
368.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
368.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
365.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
365.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
362.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
362.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
356.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
349.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
345.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
345.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
342.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
338.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
336.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
331.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
328.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
327.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
316.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
312.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
311.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
310.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
308.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
301.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
299.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
293.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
289.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
283.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
283.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
277.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
275.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
273.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
272.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
265.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
265.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
262.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
259.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
258.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
254.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
253.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
250.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
249.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
248.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
245.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
238.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
237.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
235.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
227.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
226.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
222.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
220.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
220.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
216.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
215.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
203.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
201.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
201.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
199.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
198.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
197.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
195.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
193.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
183.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
181.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
180.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
179.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
179.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
178.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
178.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
177.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
172.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
170.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
168.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
165.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
154.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
152.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
146.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
145.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
145.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
142.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
140.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
138.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
134.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
133.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
130.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
129.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
127.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
125.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
124.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
124.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
120.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
119.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
118.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
114.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
110.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
108.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
105.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
89.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
87.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
85.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
81.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
76.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
68.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
63.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
58.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
58.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
57.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
56.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
55.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
53.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
51.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
49.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
49.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
49.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
40.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
877
Tumor
2.0
815
Tumor
1.7
343
Tumor
1.3
391
Tumor
1.2
363
Tumor
1.1
671
Tumor
0.8
367
Tumor
0.8
713
Tumor
0.8
125
Tumor
0.7
1015
Tumor
0.7
471
Tumor
0.7
697
Tumor
0.6
967
Tumor
0.6
981
Tumor
0.6
491
Tumor
0.6
217
Tumor
0.6
695
Tumor
0.6
283
Tumor
0.6
785
Tumor
0.6
817
Tumor
0.6
777
Tumor
0.6
746
Normal
0.5
192
Normal
0.5
741
Tumor
0.5
487
Tumor
0.5
452
Normal
0.5
813
Tumor
0.5
915
Tumor
0.4
921
Tumor
0.4
342
Normal
0.4
227
Tumor
0.4
865
Tumor
0.4
567
Tumor
0.4
387
Tumor
0.4
663
Tumor
0.4
313
Tumor
0.3
328
Normal
0.3
937
Tumor
0.3
141
Tumor
0.3
554
Normal
0.3
983
Tumor
0.3
142
Normal
0.3
425
Tumor
0.3
778
Normal
0.2
137
Tumor
0.2
745
Tumor
0.2
953
Tumor
0.2
863
Tumor
0.2
553
Tumor
0.2
527
Tumor
0.2
515
Tumor
0.2
635
Tumor
0.2
465
Tumor
0.2
952
Normal
0.2
951
Tumor
0.2
744
Normal
0.2
518
Normal
0.2
977
Tumor
0.2
925
Tumor
0.2
975
Tumor
0.2
445
Tumor
0.2
131
Tumor
0.2
461
Tumor
0.2
883
Tumor
0.2
124
Normal
0.2
223
Tumor
0.2
112
Tumor
0.2
924
Normal
0.1
535
Tumor
0.1
492
Normal
0.1
474
Normal
0.1
463
Tumor
0.1
375
Tumor
0.1
538
Normal
0.1
546
Normal
0.1
368
Normal
0.1
715
Tumor
0.1
1041
Tumor
0.1
1045
Tumor
0.1
618
Normal
0.1
755
Tumor
0.1
878
Normal
0.1
823
Tumor
0.1
132
Normal
0.1
218
Normal
0.1
261
Tumor
0.1
138
Normal
0.1
455
Tumor
0.1
395
Tumor
0.1
426
Normal
0.0
354
Normal
0.0
355
Tumor
0.0
517
Tumor
0.0
331
Tumor
0.0
1043
Tumor
0.0
298
Normal
0.0
911
Tumor
0.0
376
Normal
0.0
365
Tumor
0.0
523
Tumor
0.0
267
Tumor
0.0
685
Tumor
0.0
861
Tumor
0.0
525
Tumor
0.0
412
Normal
0.0
396
Normal
0.0
526
Normal
0.0
327
Tumor
0.0
111
Normal
0.0
956
Normal
0.0
497
Tumor
0.0
392
Normal
0.0
914
Normal
0.0
963
Tumor
0.0
351
Tumor
0.0
464
Normal
0.0
358
Normal
0.0
966
Normal
0.0
816
Normal
0.0
1028
Normal
0.0
866
Normal
0.0
545
Tumor
0.0
344
Normal
0.0
353
Tumor
0.0
696
Normal
0.0
723
Tumor
-0.1
232
Normal
-0.1
128
Normal
-0.1
728
Normal
-0.1
386
Normal
-0.1
221
Tumor
-0.1
851
Tumor
-0.1
113
Tumor
-0.1
448
Normal
-0.1
114
Normal
-0.1
568
Normal
-0.1
136
Normal
-0.1
738
Normal
-0.1
341
Tumor
-0.1
574
Normal
-0.1
271
Tumor
-0.1
431
Tumor
-0.1
1026
Normal
-0.1
332
Normal
-0.1
147
Tumor
-0.1
422
Normal
-0.1
146
Normal
-0.1
222
Normal
-0.1
428
Normal
-0.1
615
Tumor
-0.1
312
Normal
-0.1
285
Tumor
-0.1
314
Normal
-0.1
648
Normal
-0.1
874
Normal
-0.1
421
Tumor
-0.1
224
Normal
-0.1
286
Normal
-0.1
686
Normal
-0.1
473
Tumor
-0.1
414
Normal
-0.1
472
Normal
-0.1
297
Tumor
-0.1
564
Normal
-0.1
186
Normal
-0.1
516
Normal
-0.1
388
Normal
-0.1
228
Normal
-0.1
268
Normal
-0.1
393
Tumor
-0.1
965
Tumor
-0.1
1016
Normal
-0.1
196
Normal
-0.1
742
Normal
-0.1
533
Tumor
-0.1
484
Normal
-0.1
982
Normal
-0.1
536
Normal
-0.1
727
Tumor
-0.1
436
Normal
-0.2
468
Normal
-0.2
394
Normal
-0.2
258
Normal
-0.2
483
Tumor
-0.2
148
Normal
-0.2
456
Normal
-0.2
642
Normal
-0.2
743
Tumor
-0.2
627
Tumor
-0.2
466
Normal
-0.2
647
Tumor
-0.2
714
Normal
-0.2
362
Normal
-0.2
172
Normal
-0.2
968
Normal
-0.2
636
Normal
-0.2
278
Normal
-0.2
722
Normal
-0.2
214
Normal
-0.2
881
Tumor
-0.2
262
Normal
-0.2
185
Tumor
-0.2
786
Normal
-0.2
867
Tumor
-0.2
126
Normal
-0.2
366
Normal
-0.2
384
Normal
-0.2
938
Normal
-0.2
922
Normal
-0.2
918
Normal
-0.2
462
Normal
-0.2
162
Normal
-0.2
737
Tumor
-0.2
477
Tumor
-0.2
212
Normal
-0.2
756
Normal
-0.2
664
Normal
-0.2
1021
Tumor
-0.2
964
Normal
-0.3
923
Tumor
-0.3
352
Normal
-0.3
494
Normal
-0.3
716
Normal
-0.3
424
Normal
-0.3
665
Tumor
-0.3
558
Normal
-0.3
818
Normal
-0.3
698
Normal
-0.3
868
Normal
-0.3
882
Normal
-0.3
857
Tumor
-0.3
488
Normal
-0.3
423
Tumor
-0.3
884
Normal
-0.3
534
Normal
-0.3
446
Normal
-0.3
628
Normal
-0.3
572
Normal
-0.3
284
Normal
-0.3
361
Tumor
-0.3
272
Normal
-0.3
672
Normal
-0.3
416
Normal
-0.3
451
Tumor
-0.3
435
Tumor
-0.3
563
Tumor
-0.3
1042
Normal
-0.3
443
Tumor
-0.3
1022
Normal
-0.3
916
Normal
-0.3
357
Tumor
-0.3
145
Tumor
-0.3
662
Normal
-0.3
864
Normal
-0.4
862
Normal
-0.4
447
Tumor
-0.4
958
Normal
-0.4
666
Normal
-0.4
912
Normal
-0.4
364
Normal
-0.4
385
Tumor
-0.4
434
Normal
-0.4
957
Tumor
-0.4
955
Tumor
-0.4
277
Tumor
-0.4
415
Tumor
-0.4
571
Tumor
-0.4
573
Tumor
-0.4
858
Normal
-0.4
498
Normal
-0.4
616
Normal
-0.4
171
Tumor
-0.4
1046
Normal
-0.4
135
Tumor
-0.4
444
Normal
-0.4
724
Normal
-0.4
311
Tumor
-0.4
213
Tumor
-0.4
873
Tumor
-0.5
161
Tumor
-0.5
917
Tumor
-0.5
1044
Normal
-0.5
1027
Tumor
-0.5
411
Tumor
-0.5
824
Normal
-0.5
852
Normal
-0.5
188
Normal
-0.5
976
Normal
-0.5
1025
Tumor
-0.5
617
Tumor
-0.5
432
Normal
-0.5
524
Normal
-0.5
191
Tumor
-0.5
356
Normal
-0.5
123
Tumor
-0.5
257
Tumor
-0.5
195
Tumor
-0.5
1013
Tumor
-0.5
413
Tumor
-0.5
1031
Tumor
-0.5
528
Normal
-0.5
926
Normal
-0.5
513
Tumor
-0.5
944
Normal
-0.6
383
Tumor
-0.6
557
Tumor
-0.6
721
Tumor
-0.6
814
Normal
-0.6
433
Tumor
-0.6
537
Tumor
-0.6
1014
Normal
-0.6
913
Tumor
-0.6
954
Normal
-0.6
482
Normal
-0.6
493
Tumor
-0.7
514
Normal
-0.7
187
Tumor
-0.7
943
Tumor
-0.7
231
Tumor
-0.7
984
Normal
-0.7
641
Tumor
-0.7
211
Tumor
-0.8
481
Tumor
-0.8
478
Normal
-0.8
661
Tumor
-0.8
1032
Normal
-0.8
467
Tumor
-0.9
427
Tumor
-0.9
978
Normal
-0.9
127
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.