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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OCRL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
29.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
23.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
13.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
8.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
5.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
3.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
2.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
2.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
2.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OCRL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
231
Samples
Sample
Description
TPM
DO23534
0 years, male, NA, stage:2, alive, 840 days
45.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
37.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
32.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
28.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
27.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
19.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
19.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
17.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
14.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
10.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
6.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.4
497
Tumor
1.4
343
Tumor
1.2
977
Tumor
1.1
527
Tumor
1.0
567
Tumor
1.0
131
Tumor
1.0
147
Tumor
1.0
171
Tumor
0.9
863
Tumor
0.9
125
Tumor
0.9
953
Tumor
0.9
491
Tumor
0.9
721
Tumor
0.8
917
Tumor
0.8
277
Tumor
0.8
285
Tumor
0.8
857
Tumor
0.8
573
Tumor
0.7
641
Tumor
0.7
697
Tumor
0.7
785
Tumor
0.7
881
Tumor
0.7
851
Tumor
0.7
943
Tumor
0.7
533
Tumor
0.7
745
Tumor
0.6
865
Tumor
0.6
1027
Tumor
0.6
913
Tumor
0.6
375
Tumor
0.6
921
Tumor
0.6
965
Tumor
0.6
557
Tumor
0.6
231
Tumor
0.6
487
Tumor
0.6
545
Tumor
0.6
473
Tumor
0.5
481
Tumor
0.5
817
Tumor
0.5
957
Tumor
0.5
975
Tumor
0.5
383
Tumor
0.5
724
Normal
0.5
271
Tumor
0.5
427
Tumor
0.5
261
Tumor
0.5
1043
Tumor
0.5
411
Tumor
0.5
737
Tumor
0.4
647
Tumor
0.4
355
Tumor
0.4
815
Tumor
0.4
433
Tumor
0.4
283
Tumor
0.4
313
Tumor
0.4
445
Tumor
0.4
467
Tumor
0.3
385
Tumor
0.3
777
Tumor
0.3
221
Tumor
0.3
963
Tumor
0.3
525
Tumor
0.3
861
Tumor
0.3
813
Tumor
0.3
911
Tumor
0.3
937
Tumor
0.3
823
Tumor
0.3
553
Tumor
0.3
663
Tumor
0.3
523
Tumor
0.3
713
Tumor
0.3
463
Tumor
0.3
627
Tumor
0.3
327
Tumor
0.2
695
Tumor
0.2
483
Tumor
0.2
395
Tumor
0.2
217
Tumor
0.2
915
Tumor
0.2
524
Normal
0.2
873
Tumor
0.2
983
Tumor
0.2
447
Tumor
0.2
223
Tumor
0.2
516
Normal
0.2
741
Tumor
0.2
951
Tumor
0.2
145
Tumor
0.2
493
Tumor
0.1
743
Tumor
0.1
617
Tumor
0.1
135
Tumor
0.1
393
Tumor
0.1
311
Tumor
0.1
537
Tumor
0.1
536
Normal
0.1
257
Tumor
0.1
515
Tumor
0.1
455
Tumor
0.1
814
Normal
0.1
671
Tumor
0.1
498
Normal
0.1
376
Normal
0.1
227
Tumor
0.1
1021
Tumor
0.1
191
Tumor
0.1
384
Normal
0.1
513
Tumor
0.1
161
Tumor
0.1
514
Normal
0.1
425
Tumor
0.1
1031
Tumor
0.1
421
Tumor
0.1
492
Normal
0.1
1041
Tumor
0.1
715
Tumor
0.0
471
Tumor
0.0
478
Normal
0.0
518
Normal
0.0
571
Tumor
0.0
1015
Tumor
0.0
1032
Normal
0.0
297
Tumor
0.0
368
Normal
0.0
443
Tumor
0.0
354
Normal
0.0
685
Tumor
0.0
858
Normal
0.0
955
Tumor
0.0
361
Tumor
0.0
665
Tumor
0.0
366
Normal
0.0
224
Normal
0.0
756
Normal
0.0
538
Normal
0.0
1028
Normal
0.0
357
Tumor
0.0
1044
Normal
0.0
413
Tumor
0.0
916
Normal
0.0
672
Normal
0.0
123
Tumor
0.0
141
Tumor
0.0
267
Tumor
0.0
528
Normal
-0.1
824
Normal
-0.1
431
Tumor
-0.1
1022
Normal
-0.1
526
Normal
-0.1
365
Tumor
-0.1
461
Tumor
-0.1
958
Normal
-0.1
451
Tumor
-0.1
432
Normal
-0.1
923
Tumor
-0.1
786
Normal
-0.1
127
Tumor
-0.1
213
Tumor
-0.1
444
Normal
-0.1
1042
Normal
-0.1
113
Tumor
-0.1
362
Normal
-0.1
981
Tumor
-0.1
954
Normal
-0.1
572
Normal
-0.1
187
Tumor
-0.1
918
Normal
-0.1
185
Tumor
-0.1
212
Normal
-0.1
286
Normal
-0.1
982
Normal
-0.1
883
Tumor
-0.1
546
Normal
-0.1
696
Normal
-0.1
978
Normal
-0.1
554
Normal
-0.1
342
Normal
-0.1
1025
Tumor
-0.1
358
Normal
-0.1
284
Normal
-0.1
388
Normal
-0.1
818
Normal
-0.1
746
Normal
-0.1
558
Normal
-0.1
924
Normal
-0.1
446
Normal
-0.1
956
Normal
-0.1
926
Normal
-0.1
648
Normal
-0.1
912
Normal
-0.1
1026
Normal
-0.1
1045
Tumor
-0.1
534
Normal
-0.1
1016
Normal
-0.1
925
Tumor
-0.1
394
Normal
-0.1
874
Normal
-0.1
866
Normal
-0.2
228
Normal
-0.2
922
Normal
-0.2
968
Normal
-0.2
434
Normal
-0.2
332
Normal
-0.2
472
Normal
-0.2
353
Tumor
-0.2
482
Normal
-0.2
112
Tumor
-0.2
192
Normal
-0.2
392
Normal
-0.2
268
Normal
-0.2
312
Normal
-0.2
414
Normal
-0.2
714
Normal
-0.2
386
Normal
-0.2
146
Normal
-0.2
952
Normal
-0.2
435
Tumor
-0.2
722
Normal
-0.2
484
Normal
-0.2
778
Normal
-0.2
664
Normal
-0.2
494
Normal
-0.2
488
Normal
-0.2
574
Normal
-0.2
477
Tumor
-0.2
852
Normal
-0.2
314
Normal
-0.2
188
Normal
-0.2
474
Normal
-0.2
278
Normal
-0.2
111
Normal
-0.2
136
Normal
-0.2
328
Normal
-0.2
258
Normal
-0.2
137
Tumor
-0.2
412
Normal
-0.2
344
Normal
-0.2
976
Normal
-0.2
367
Tumor
-0.2
262
Normal
-0.2
172
Normal
-0.2
884
Normal
-0.2
424
Normal
-0.2
864
Normal
-0.2
635
Tumor
-0.2
422
Normal
-0.2
564
Normal
-0.2
211
Tumor
-0.2
352
Normal
-0.2
415
Tumor
-0.2
468
Normal
-0.2
423
Tumor
-0.2
162
Normal
-0.2
616
Normal
-0.2
938
Normal
-0.2
984
Normal
-0.2
364
Normal
-0.2
391
Tumor
-0.2
535
Tumor
-0.2
862
Normal
-0.2
124
Normal
-0.2
867
Tumor
-0.2
698
Normal
-0.2
642
Normal
-0.2
298
Normal
-0.2
686
Normal
-0.2
416
Normal
-0.3
1014
Normal
-0.3
966
Normal
-0.3
877
Tumor
-0.3
462
Normal
-0.3
466
Normal
-0.3
727
Tumor
-0.3
517
Tumor
-0.3
944
Normal
-0.3
716
Normal
-0.3
618
Normal
-0.3
218
Normal
-0.3
816
Normal
-0.3
232
Normal
-0.3
138
Normal
-0.3
396
Normal
-0.3
964
Normal
-0.3
868
Normal
-0.3
195
Tumor
-0.3
448
Normal
-0.3
914
Normal
-0.3
666
Normal
-0.3
142
Normal
-0.3
636
Normal
-0.3
723
Tumor
-0.3
615
Tumor
-0.3
436
Normal
-0.3
568
Normal
-0.3
331
Tumor
-0.3
738
Normal
-0.3
728
Normal
-0.3
563
Tumor
-0.3
878
Normal
-0.3
272
Normal
-0.3
464
Normal
-0.3
428
Normal
-0.3
426
Normal
-0.3
148
Normal
-0.3
456
Normal
-0.3
132
Normal
-0.3
1046
Normal
-0.3
186
Normal
-0.3
341
Tumor
-0.3
755
Tumor
-0.3
356
Normal
-0.3
628
Normal
-0.4
214
Normal
-0.4
465
Tumor
-0.4
742
Normal
-0.4
882
Normal
-0.4
363
Tumor
-0.4
196
Normal
-0.4
744
Normal
-0.4
452
Normal
-0.4
351
Tumor
-0.4
128
Normal
-0.4
222
Normal
-0.4
967
Tumor
-0.4
662
Normal
-0.5
114
Normal
-0.5
126
Normal
-0.5
387
Tumor
-0.6
661
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.