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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MTERF4 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
20.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
19.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
18.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
18.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
17.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
15.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
13.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
12.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
11.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
10.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
8.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
8.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
5.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
1.7
1041
Tumor
1.2
355
Tumor
1.0
957
Tumor
0.9
865
Tumor
0.8
695
Tumor
0.8
951
Tumor
0.8
363
Tumor
0.8
967
Tumor
0.7
535
Tumor
0.7
361
Tumor
0.7
525
Tumor
0.7
557
Tumor
0.7
473
Tumor
0.6
393
Tumor
0.6
221
Tumor
0.6
491
Tumor
0.6
671
Tumor
0.6
423
Tumor
0.6
937
Tumor
0.6
367
Tumor
0.6
128
Normal
0.6
285
Tumor
0.5
981
Tumor
0.5
227
Tumor
0.5
715
Tumor
0.5
665
Tumor
0.5
465
Tumor
0.5
663
Tumor
0.5
922
Normal
0.5
467
Tumor
0.5
553
Tumor
0.5
185
Tumor
0.5
435
Tumor
0.4
211
Tumor
0.4
145
Tumor
0.4
911
Tumor
0.4
915
Tumor
0.4
713
Tumor
0.4
111
Normal
0.4
926
Normal
0.4
938
Normal
0.4
483
Tumor
0.4
261
Tumor
0.4
477
Tumor
0.4
191
Tumor
0.4
113
Tumor
0.4
451
Tumor
0.4
537
Tumor
0.4
741
Tumor
0.4
257
Tumor
0.4
944
Normal
0.4
546
Normal
0.4
413
Tumor
0.4
493
Tumor
0.4
1021
Tumor
0.4
1013
Tumor
0.4
883
Tumor
0.3
137
Tumor
0.3
112
Tumor
0.3
746
Normal
0.3
114
Normal
0.3
571
Tumor
0.3
554
Normal
0.3
745
Tumor
0.3
396
Normal
0.3
327
Tumor
0.3
785
Tumor
0.3
482
Normal
0.3
394
Normal
0.3
466
Normal
0.3
424
Normal
0.3
344
Normal
0.3
195
Tumor
0.3
468
Normal
0.3
481
Tumor
0.2
162
Normal
0.2
572
Normal
0.2
351
Tumor
0.2
125
Tumor
0.2
786
Normal
0.2
716
Normal
0.2
698
Normal
0.2
411
Tumor
0.2
914
Normal
0.2
956
Normal
0.2
924
Normal
0.2
124
Normal
0.2
427
Tumor
0.2
186
Normal
0.2
982
Normal
0.2
563
Tumor
0.2
743
Tumor
0.2
391
Tumor
0.2
526
Normal
0.2
231
Tumor
0.2
877
Tumor
0.2
1032
Normal
0.2
528
Normal
0.2
918
Normal
0.2
328
Normal
0.2
912
Normal
0.2
267
Tumor
0.2
1014
Normal
0.2
978
Normal
0.1
1016
Normal
0.1
884
Normal
0.1
744
Normal
0.1
142
Normal
0.1
356
Normal
0.1
686
Normal
0.1
722
Normal
0.1
171
Tumor
0.1
464
Normal
0.1
965
Tumor
0.1
488
Normal
0.1
365
Tumor
0.1
187
Tumor
0.1
354
Normal
0.1
472
Normal
0.1
213
Tumor
0.1
352
Normal
0.1
1043
Tumor
0.1
258
Normal
0.1
963
Tumor
0.1
286
Normal
0.1
284
Normal
0.1
882
Normal
0.1
478
Normal
0.1
132
Normal
0.1
916
Normal
0.1
1046
Normal
0.1
452
Normal
0.1
984
Normal
0.1
648
Normal
0.1
223
Tumor
0.1
514
Normal
0.1
696
Normal
0.1
723
Tumor
0.1
358
Normal
0.1
212
Normal
0.1
964
Normal
0.1
858
Normal
0.1
376
Normal
0.0
456
Normal
0.0
714
Normal
0.0
474
Normal
0.0
534
Normal
0.0
513
Tumor
0.0
952
Normal
0.0
721
Tumor
0.0
518
Normal
0.0
364
Normal
0.0
392
Normal
0.0
232
Normal
0.0
272
Normal
0.0
823
Tumor
0.0
224
Normal
0.0
954
Normal
0.0
412
Normal
0.0
426
Normal
0.0
517
Tumor
0.0
1022
Normal
0.0
463
Tumor
0.0
536
Normal
0.0
357
Tumor
0.0
262
Normal
0.0
462
Normal
0.0
516
Normal
0.0
966
Normal
0.0
446
Normal
0.0
647
Tumor
0.0
448
Normal
0.0
131
Tumor
0.0
342
Normal
0.0
976
Normal
0.0
421
Tumor
0.0
1025
Tumor
0.0
431
Tumor
0.0
527
Tumor
0.0
778
Normal
-0.1
268
Normal
-0.1
917
Tumor
-0.1
913
Tumor
-0.1
494
Normal
-0.1
666
Normal
-0.1
484
Normal
-0.1
386
Normal
-0.1
921
Tumor
-0.1
422
Normal
-0.1
568
Normal
-0.1
455
Tumor
-0.1
228
Normal
-0.1
664
Normal
-0.1
188
Normal
-0.1
414
Normal
-0.1
461
Tumor
-0.1
983
Tumor
-0.1
1044
Normal
-0.1
283
Tumor
-0.1
1031
Tumor
-0.1
955
Tumor
-0.1
943
Tumor
-0.1
685
Tumor
-0.1
138
Normal
-0.1
742
Normal
-0.1
728
Normal
-0.1
868
Normal
-0.1
817
Tumor
-0.1
271
Tumor
-0.1
362
Normal
-0.1
1042
Normal
-0.1
343
Tumor
-0.1
923
Tumor
-0.1
136
Normal
-0.1
756
Normal
-0.1
141
Tumor
-0.2
818
Normal
-0.2
375
Tumor
-0.2
146
Normal
-0.2
533
Tumor
-0.2
824
Normal
-0.2
148
Normal
-0.2
867
Tumor
-0.2
432
Normal
-0.2
953
Tumor
-0.2
977
Tumor
-0.2
697
Tumor
-0.2
217
Tumor
-0.2
444
Normal
-0.2
864
Normal
-0.2
852
Normal
-0.2
558
Normal
-0.2
487
Tumor
-0.2
816
Normal
-0.2
388
Normal
-0.2
975
Tumor
-0.2
428
Normal
-0.2
353
Tumor
-0.2
172
Normal
-0.2
126
Normal
-0.2
395
Tumor
-0.2
497
Tumor
-0.2
755
Tumor
-0.2
492
Normal
-0.2
127
Tumor
-0.2
1027
Tumor
-0.2
724
Normal
-0.2
196
Normal
-0.2
341
Tumor
-0.2
851
Tumor
-0.2
662
Normal
-0.3
1045
Tumor
-0.3
384
Normal
-0.3
436
Normal
-0.3
524
Normal
-0.3
447
Tumor
-0.3
862
Normal
-0.3
881
Tumor
-0.3
545
Tumor
-0.3
968
Normal
-0.3
672
Normal
-0.3
861
Tumor
-0.3
538
Normal
-0.3
523
Tumor
-0.3
147
Tumor
-0.3
564
Normal
-0.3
661
Tumor
-0.3
498
Normal
-0.3
471
Tumor
-0.3
866
Normal
-0.4
222
Normal
-0.4
192
Normal
-0.4
727
Tumor
-0.4
958
Normal
-0.4
416
Normal
-0.4
415
Tumor
-0.4
368
Normal
-0.4
135
Tumor
-0.4
1026
Normal
-0.4
1015
Tumor
-0.4
857
Tumor
-0.4
161
Tumor
-0.4
214
Normal
-0.4
366
Normal
-0.5
873
Tumor
-0.5
385
Tumor
-0.5
387
Tumor
-0.5
815
Tumor
-0.5
383
Tumor
-0.5
443
Tumor
-0.5
425
Tumor
-0.5
574
Normal
-0.5
434
Normal
-0.5
433
Tumor
-0.5
1028
Normal
-0.6
874
Normal
-0.6
218
Normal
-0.6
737
Tumor
-0.6
567
Tumor
-0.7
445
Tumor
-0.7
515
Tumor
-0.7
738
Normal
-0.7
878
Normal
-0.7
573
Tumor
-0.7
814
Normal
-0.8
123
Tumor
-0.9
777
Tumor
-1.3
863
Tumor
-1.4
813
Tumor
-1.5
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
