We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDS5A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
33.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
33.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
32.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
24.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
23.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
19.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
17.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
17.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
15.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
14.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
14.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
11.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
11.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
11.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
10.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
10.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
9.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
8.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDS5A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.2
Number of samples
231
Samples
Sample
Description
TPM
DO45213
0 years, male, NA, stage:1, alive, 1200 days
70.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
67.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
52.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
39.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
37.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
32.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
30.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
29.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
29.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
24.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
24.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
23.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
22.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
21.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
20.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
19.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
18.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
17.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
16.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
15.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
14.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
14.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
13.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
12.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
0.9
671
Tumor
0.9
951
Tumor
0.9
313
Tumor
0.9
743
Tumor
0.9
813
Tumor
0.8
661
Tumor
0.8
425
Tumor
0.8
497
Tumor
0.8
635
Tumor
0.8
463
Tumor
0.8
877
Tumor
0.8
277
Tumor
0.7
1021
Tumor
0.7
865
Tumor
0.7
967
Tumor
0.7
921
Tumor
0.7
131
Tumor
0.7
943
Tumor
0.7
411
Tumor
0.6
977
Tumor
0.6
965
Tumor
0.6
937
Tumor
0.6
817
Tumor
0.6
112
Tumor
0.6
343
Tumor
0.6
957
Tumor
0.6
814
Normal
0.6
737
Tumor
0.6
471
Tumor
0.6
385
Tumor
0.5
161
Tumor
0.5
1025
Tumor
0.5
431
Tumor
0.5
367
Tumor
0.5
1013
Tumor
0.5
341
Tumor
0.5
641
Tumor
0.5
647
Tumor
0.5
135
Tumor
0.5
983
Tumor
0.5
881
Tumor
0.5
487
Tumor
0.5
123
Tumor
0.5
211
Tumor
0.5
545
Tumor
0.4
413
Tumor
0.4
523
Tumor
0.4
815
Tumor
0.4
745
Tumor
0.4
443
Tumor
0.4
975
Tumor
0.4
125
Tumor
0.4
285
Tumor
0.4
331
Tumor
0.4
727
Tumor
0.4
695
Tumor
0.4
297
Tumor
0.4
567
Tumor
0.4
1031
Tumor
0.4
537
Tumor
0.3
213
Tumor
0.3
517
Tumor
0.3
355
Tumor
0.3
127
Tumor
0.3
433
Tumor
0.3
375
Tumor
0.3
271
Tumor
0.3
873
Tumor
0.3
221
Tumor
0.3
467
Tumor
0.3
527
Tumor
0.3
427
Tumor
0.3
493
Tumor
0.3
455
Tumor
0.3
923
Tumor
0.3
447
Tumor
0.3
1043
Tumor
0.2
535
Tumor
0.2
217
Tumor
0.2
663
Tumor
0.2
231
Tumor
0.2
823
Tumor
0.2
391
Tumor
0.2
477
Tumor
0.2
1045
Tumor
0.2
883
Tumor
0.2
963
Tumor
0.2
724
Normal
0.2
491
Tumor
0.2
283
Tumor
0.2
563
Tumor
0.2
697
Tumor
0.2
665
Tumor
0.2
421
Tumor
0.1
553
Tumor
0.1
573
Tumor
0.1
383
Tumor
0.1
785
Tumor
0.1
227
Tumor
0.1
192
Normal
0.1
171
Tumor
0.1
571
Tumor
0.1
311
Tumor
0.1
473
Tumor
0.1
145
Tumor
0.0
715
Tumor
0.0
395
Tumor
0.0
185
Tumor
0.0
536
Normal
0.0
435
Tumor
0.0
861
Tumor
0.0
917
Tumor
0.0
685
Tumor
0.0
445
Tumor
0.0
423
Tumor
0.0
357
Tumor
0.0
141
Tumor
0.0
851
Tumor
0.0
1027
Tumor
0.0
857
Tumor
0.0
267
Tumor
0.0
393
Tumor
0.0
113
Tumor
0.0
147
Tumor
0.0
126
Normal
0.0
492
Normal
0.0
483
Tumor
0.0
744
Normal
-0.1
268
Normal
-0.1
387
Tumor
-0.1
721
Tumor
-0.1
384
Normal
-0.1
444
Normal
-0.1
361
Tumor
-0.1
478
Normal
-0.1
713
Tumor
-0.1
498
Normal
-0.1
195
Tumor
-0.1
672
Normal
-0.1
415
Tumor
-0.1
863
Tumor
-0.1
524
Normal
-0.1
515
Tumor
-0.1
451
Tumor
-0.1
124
Normal
-0.1
191
Tumor
-0.1
953
Tumor
-0.1
146
Normal
-0.1
878
Normal
-0.1
966
Normal
-0.1
664
Normal
-0.1
434
Normal
-0.1
662
Normal
-0.1
925
Tumor
-0.1
342
Normal
-0.1
363
Tumor
-0.1
481
Tumor
-0.1
352
Normal
-0.1
574
Normal
-0.1
187
Tumor
-0.1
882
Normal
-0.1
298
Normal
-0.1
1015
Tumor
-0.1
686
Normal
-0.1
557
Tumor
-0.1
978
Normal
-0.1
938
Normal
-0.1
538
Normal
-0.1
114
Normal
-0.1
148
Normal
-0.1
984
Normal
-0.1
1014
Normal
-0.1
615
Tumor
-0.1
188
Normal
-0.1
534
Normal
-0.1
142
Normal
-0.1
186
Normal
-0.1
448
Normal
-0.1
755
Tumor
-0.2
666
Normal
-0.2
218
Normal
-0.2
488
Normal
-0.2
223
Tumor
-0.2
365
Tumor
-0.2
111
Normal
-0.2
257
Tumor
-0.2
386
Normal
-0.2
884
Normal
-0.2
911
Tumor
-0.2
456
Normal
-0.2
648
Normal
-0.2
1046
Normal
-0.2
354
Normal
-0.2
224
Normal
-0.2
533
Tumor
-0.2
913
Tumor
-0.2
955
Tumor
-0.2
362
Normal
-0.2
1041
Tumor
-0.2
344
Normal
-0.2
1016
Normal
-0.2
424
Normal
-0.2
554
Normal
-0.2
353
Tumor
-0.2
867
Tumor
-0.2
465
Tumor
-0.2
426
Normal
-0.2
428
Normal
-0.2
461
Tumor
-0.2
546
Normal
-0.2
778
Normal
-0.2
396
Normal
-0.2
272
Normal
-0.2
636
Normal
-0.2
924
Normal
-0.2
716
Normal
-0.2
525
Tumor
-0.2
916
Normal
-0.2
818
Normal
-0.2
516
Normal
-0.2
484
Normal
-0.2
954
Normal
-0.2
388
Normal
-0.2
777
Tumor
-0.2
628
Normal
-0.2
312
Normal
-0.2
464
Normal
-0.2
332
Normal
-0.2
1032
Normal
-0.2
162
Normal
-0.2
912
Normal
-0.2
422
Normal
-0.2
741
Tumor
-0.2
196
Normal
-0.2
262
Normal
-0.2
1044
Normal
-0.2
284
Normal
-0.2
952
Normal
-0.2
358
Normal
-0.2
858
Normal
-0.2
314
Normal
-0.2
222
Normal
-0.2
518
Normal
-0.2
394
Normal
-0.2
698
Normal
-0.2
494
Normal
-0.2
824
Normal
-0.2
128
Normal
-0.2
976
Normal
-0.2
328
Normal
-0.2
564
Normal
-0.2
212
Normal
-0.2
714
Normal
-0.2
414
Normal
-0.2
944
Normal
-0.2
526
Normal
-0.2
137
Tumor
-0.2
568
Normal
-0.2
138
Normal
-0.2
228
Normal
-0.2
558
Normal
-0.2
446
Normal
-0.2
261
Tumor
-0.2
392
Normal
-0.2
172
Normal
-0.2
982
Normal
-0.2
376
Normal
-0.2
926
Normal
-0.2
258
Normal
-0.2
874
Normal
-0.2
528
Normal
-0.2
746
Normal
-0.2
742
Normal
-0.2
466
Normal
-0.2
482
Normal
-0.2
412
Normal
-0.2
572
Normal
-0.2
1026
Normal
-0.3
958
Normal
-0.3
214
Normal
-0.3
364
Normal
-0.3
432
Normal
-0.3
1028
Normal
-0.3
786
Normal
-0.3
738
Normal
-0.3
368
Normal
-0.3
514
Normal
-0.3
968
Normal
-0.3
756
Normal
-0.3
915
Tumor
-0.3
956
Normal
-0.3
452
Normal
-0.3
132
Normal
-0.3
696
Normal
-0.3
922
Normal
-0.3
472
Normal
-0.3
964
Normal
-0.3
618
Normal
-0.3
513
Tumor
-0.3
436
Normal
-0.3
852
Normal
-0.3
1022
Normal
-0.3
816
Normal
-0.3
366
Normal
-0.3
286
Normal
-0.3
642
Normal
-0.3
462
Normal
-0.3
914
Normal
-0.3
866
Normal
-0.3
474
Normal
-0.3
918
Normal
-0.3
136
Normal
-0.3
468
Normal
-0.3
356
Normal
-0.3
723
Tumor
-0.3
616
Normal
-0.3
278
Normal
-0.3
416
Normal
-0.3
862
Normal
-0.3
1042
Normal
-0.3
617
Tumor
-0.3
722
Normal
-0.3
728
Normal
-0.3
864
Normal
-0.3
232
Normal
-0.4
627
Tumor
-0.4
868
Normal
-0.4
327
Tumor
-0.4
981
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
