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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KHDRBS1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
110.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
102.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
101.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
91.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
88.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
84.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
84.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
78.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
76.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
76.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
74.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
74.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
72.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
71.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
70.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
69.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
68.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
64.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
63.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
63.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
63.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
62.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
60.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
60.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
59.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
58.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
58.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
58.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
58.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
57.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
57.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
55.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
55.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
54.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
54.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
54.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
54.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
53.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
53.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
53.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
53.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
51.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
51.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
51.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
50.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
48.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
48.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
47.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
47.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
47.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
47.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
47.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
46.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
46.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
45.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
45.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
45.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
45.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
44.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
44.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
44.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
43.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
42.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
42.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
41.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
41.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
41.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
41.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
41.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
40.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
40.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
40.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
39.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
38.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
38.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
38.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
38.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
38.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
38.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
38.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
37.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
37.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
37.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
37.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
37.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
37.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
37.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
37.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
37.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
36.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
36.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
36.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
35.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
35.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
35.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
34.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
34.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
34.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
34.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
33.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
33.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
33.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
32.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
32.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
32.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
32.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
32.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
32.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
31.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
31.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
31.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
31.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
31.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
31.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
30.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
30.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
30.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
30.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
30.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
30.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
30.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
30.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
30.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
30.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
30.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
30.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
29.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
29.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
29.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
29.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
28.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
28.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
28.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
27.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
27.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
27.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
27.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
27.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
27.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
26.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
26.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
26.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
26.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
26.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
26.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
26.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
25.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
25.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
25.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
25.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
25.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
24.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
24.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
24.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
23.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
23.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
23.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
23.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
23.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
23.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
23.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
23.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
23.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
23.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
23.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
22.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
21.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
21.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
21.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
21.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
21.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
21.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
20.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
20.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
20.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
19.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
18.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
17.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
17.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
16.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
16.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
16.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
14.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
14.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KHDRBS1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.2
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
80.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
77.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
75.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
75.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
69.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
67.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
65.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
63.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
62.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
60.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
59.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
57.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
57.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
55.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
54.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
54.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
54.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
53.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
53.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
53.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
52.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
52.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
51.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
51.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
50.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
50.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
50.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
49.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
49.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
49.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
48.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
48.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
48.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
47.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
47.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
46.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
46.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
46.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
44.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
44.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
43.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
43.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
42.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
42.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
42.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
42.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
42.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
41.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
40.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
40.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
40.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
39.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
39.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
39.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
38.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
38.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
38.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
38.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
37.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
37.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
36.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
36.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
35.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
35.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
35.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
35.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
35.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
35.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
34.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
34.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
34.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
33.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
33.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
33.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
33.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
33.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
32.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
32.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
32.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
31.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
31.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
31.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
31.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
31.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
31.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
30.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
30.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
30.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
30.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
30.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
29.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
29.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
28.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
28.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
27.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
27.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
27.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
27.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
27.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
26.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
26.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
26.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
26.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
25.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
25.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
25.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
25.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
24.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
23.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
23.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
22.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
22.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
21.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
21.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
20.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
20.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
19.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
13.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
12.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.2
743
Tumor
0.9
473
Tumor
0.8
661
Tumor
0.8
967
Tumor
0.7
535
Tumor
0.7
951
Tumor
0.7
355
Tumor
0.6
545
Tumor
0.6
877
Tumor
0.6
727
Tumor
0.6
425
Tumor
0.6
943
Tumor
0.6
777
Tumor
0.6
367
Tumor
0.6
1013
Tumor
0.6
497
Tumor
0.6
983
Tumor
0.6
937
Tumor
0.6
351
Tumor
0.6
487
Tumor
0.5
527
Tumor
0.5
695
Tumor
0.5
1021
Tumor
0.5
447
Tumor
0.5
737
Tumor
0.5
283
Tumor
0.5
1041
Tumor
0.5
443
Tumor
0.5
917
Tumor
0.5
977
Tumor
0.5
865
Tumor
0.5
536
Normal
0.5
724
Normal
0.4
567
Tumor
0.4
537
Tumor
0.4
953
Tumor
0.4
571
Tumor
0.4
785
Tumor
0.4
823
Tumor
0.4
515
Tumor
0.4
573
Tumor
0.4
478
Normal
0.4
697
Tumor
0.4
313
Tumor
0.4
663
Tumor
0.4
413
Tumor
0.4
957
Tumor
0.4
135
Tumor
0.4
1031
Tumor
0.3
123
Tumor
0.3
813
Tumor
0.3
463
Tumor
0.3
963
Tumor
0.3
671
Tumor
0.3
131
Tumor
0.3
1025
Tumor
0.3
533
Tumor
0.3
363
Tumor
0.3
1015
Tumor
0.3
975
Tumor
0.3
112
Tumor
0.3
471
Tumor
0.3
277
Tumor
0.3
615
Tumor
0.3
461
Tumor
0.3
125
Tumor
0.3
427
Tumor
0.3
685
Tumor
0.3
635
Tumor
0.3
297
Tumor
0.3
863
Tumor
0.3
721
Tumor
0.3
755
Tumor
0.3
911
Tumor
0.3
923
Tumor
0.3
883
Tumor
0.3
881
Tumor
0.2
391
Tumor
0.2
851
Tumor
0.2
517
Tumor
0.2
913
Tumor
0.2
285
Tumor
0.2
925
Tumor
0.2
387
Tumor
0.2
383
Tumor
0.2
815
Tumor
0.2
455
Tumor
0.2
211
Tumor
0.2
814
Normal
0.2
477
Tumor
0.2
493
Tumor
0.2
185
Tumor
0.2
385
Tumor
0.2
331
Tumor
0.2
665
Tumor
0.2
1014
Normal
0.2
1045
Tumor
0.2
483
Tumor
0.2
491
Tumor
0.2
341
Tumor
0.2
966
Normal
0.2
161
Tumor
0.2
524
Normal
0.2
538
Normal
0.2
431
Tumor
0.2
513
Tumor
0.2
223
Tumor
0.2
492
Normal
0.2
984
Normal
0.2
916
Normal
0.2
938
Normal
0.2
311
Tumor
0.2
921
Tumor
0.1
525
Tumor
0.1
141
Tumor
0.1
375
Tumor
0.1
741
Tumor
0.1
817
Tumor
0.1
861
Tumor
0.1
647
Tumor
0.1
557
Tumor
0.1
1032
Normal
0.1
411
Tumor
0.1
415
Tumor
0.1
1027
Tumor
0.1
978
Normal
0.1
327
Tumor
0.1
481
Tumor
0.1
261
Tumor
0.1
498
Normal
0.1
981
Tumor
0.1
958
Normal
0.1
267
Tumor
0.1
227
Tumor
0.1
968
Normal
0.1
686
Normal
0.1
857
Tumor
0.1
523
Tumor
0.1
713
Tumor
0.1
213
Tumor
0.0
554
Normal
0.0
393
Tumor
0.0
467
Tumor
0.0
357
Tumor
0.0
231
Tumor
0.0
516
Normal
0.0
343
Tumor
0.0
955
Tumor
0.0
627
Tumor
0.0
867
Tumor
0.0
954
Normal
0.0
412
Normal
0.0
395
Tumor
0.0
221
Tumor
0.0
1028
Normal
0.0
1044
Normal
0.0
563
Tumor
0.0
145
Tumor
0.0
212
Normal
0.0
328
Normal
0.0
472
Normal
0.0
873
Tumor
0.0
113
Tumor
0.0
553
Tumor
0.0
1043
Tumor
0.0
137
Tumor
0.0
451
Tumor
0.0
716
Normal
0.0
964
Normal
0.0
715
Tumor
0.0
617
Tumor
0.0
488
Normal
0.0
641
Tumor
0.0
1042
Normal
0.0
433
Tumor
0.0
423
Tumor
0.0
257
Tumor
0.0
852
Normal
0.0
924
Normal
0.0
976
Normal
0.0
494
Normal
0.0
912
Normal
0.0
546
Normal
0.0
1026
Normal
0.0
534
Normal
0.0
915
Tumor
0.0
361
Tumor
-0.1
878
Normal
-0.1
944
Normal
-0.1
884
Normal
-0.1
484
Normal
-0.1
474
Normal
-0.1
746
Normal
-0.1
448
Normal
-0.1
271
Tumor
-0.1
1022
Normal
-0.1
482
Normal
-0.1
268
Normal
-0.1
171
Tumor
-0.1
778
Normal
-0.1
982
Normal
-0.1
192
Normal
-0.1
127
Tumor
-0.1
365
Tumor
-0.1
444
Normal
-0.1
874
Normal
-0.1
952
Normal
-0.1
858
Normal
-0.1
616
Normal
-0.1
284
Normal
-0.1
558
Normal
-0.1
862
Normal
-0.1
364
Normal
-0.1
728
Normal
-0.1
696
Normal
-0.1
416
Normal
-0.1
866
Normal
-0.1
572
Normal
-0.1
868
Normal
-0.1
922
Normal
-0.1
514
Normal
-0.1
421
Tumor
-0.1
526
Normal
-0.1
384
Normal
-0.1
882
Normal
-0.1
528
Normal
-0.1
224
Normal
-0.1
956
Normal
-0.1
312
Normal
-0.1
465
Tumor
-0.1
926
Normal
-0.1
824
Normal
-0.1
738
Normal
-0.2
714
Normal
-0.2
518
Normal
-0.2
356
Normal
-0.2
816
Normal
-0.2
188
Normal
-0.2
628
Normal
-0.2
918
Normal
-0.2
142
Normal
-0.2
1016
Normal
-0.2
723
Tumor
-0.2
228
Normal
-0.2
462
Normal
-0.2
636
Normal
-0.2
217
Tumor
-0.2
195
Tumor
-0.2
298
Normal
-0.2
353
Tumor
-0.2
786
Normal
-0.2
574
Normal
-0.2
662
Normal
-0.2
332
Normal
-0.2
664
Normal
-0.2
864
Normal
-0.2
1046
Normal
-0.2
666
Normal
-0.2
434
Normal
-0.2
262
Normal
-0.2
648
Normal
-0.2
742
Normal
-0.2
756
Normal
-0.2
162
Normal
-0.2
435
Tumor
-0.2
698
Normal
-0.2
146
Normal
-0.2
314
Normal
-0.3
568
Normal
-0.3
386
Normal
-0.3
744
Normal
-0.3
818
Normal
-0.3
278
Normal
-0.3
352
Normal
-0.3
564
Normal
-0.3
426
Normal
-0.3
187
Tumor
-0.3
914
Normal
-0.3
368
Normal
-0.3
114
Normal
-0.3
344
Normal
-0.3
464
Normal
-0.3
745
Tumor
-0.3
672
Normal
-0.3
286
Normal
-0.3
272
Normal
-0.3
432
Normal
-0.3
422
Normal
-0.3
445
Tumor
-0.3
618
Normal
-0.3
722
Normal
-0.3
214
Normal
-0.3
232
Normal
-0.3
414
Normal
-0.3
124
Normal
-0.3
362
Normal
-0.3
126
Normal
-0.3
376
Normal
-0.3
172
Normal
-0.3
148
Normal
-0.3
132
Normal
-0.3
642
Normal
-0.3
136
Normal
-0.3
424
Normal
-0.4
392
Normal
-0.4
186
Normal
-0.4
196
Normal
-0.4
191
Tumor
-0.4
147
Tumor
-0.4
222
Normal
-0.4
218
Normal
-0.4
366
Normal
-0.4
456
Normal
-0.4
128
Normal
-0.4
396
Normal
-0.4
394
Normal
-0.4
428
Normal
-0.4
358
Normal
-0.4
138
Normal
-0.4
466
Normal
-0.4
111
Normal
-0.4
354
Normal
-0.4
342
Normal
-0.4
258
Normal
-0.4
468
Normal
-0.4
446
Normal
-0.4
436
Normal
-0.4
452
Normal
-0.5
388
Normal
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
