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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRY2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
57.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
57.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
54.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
54.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
52.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
52.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
47.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
46.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
46.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
45.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
44.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
41.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
41.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
40.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
40.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
40.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
39.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
38.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
38.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
37.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
36.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
36.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
36.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
35.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
35.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
35.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
34.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
33.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
33.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
33.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
32.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
31.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
31.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
30.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
30.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
29.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
28.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
28.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
27.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
27.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
27.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
26.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
26.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
26.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
26.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
25.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
25.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
24.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
24.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
23.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
23.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
23.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
23.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
21.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
21.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
21.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
20.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
20.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
19.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
19.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
18.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
18.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
17.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
17.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
17.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
16.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
15.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
15.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
15.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
14.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
14.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
14.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
12.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
12.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
9.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
4.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CRY2 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.4
Number of samples
231
Samples
Sample
Description
TPM
DO50817
0 years, male, NA, stage:2, alive, 390 days
91.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
83.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
79.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
70.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
64.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
62.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
61.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
54.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
53.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
52.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
48.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
46.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
45.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
45.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
42.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
39.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
39.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
38.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
37.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
37.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
36.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
35.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
35.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
35.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
34.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
32.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
31.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
30.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
29.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
29.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
28.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
27.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
26.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
26.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
25.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
25.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
25.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
24.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
24.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
23.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
21.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
20.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
20.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
19.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
18.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
18.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
18.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
18.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
17.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
14.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
10.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
8.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
635
Tumor
0.7
148
Normal
0.7
424
Normal
0.6
132
Normal
0.6
428
Normal
0.6
482
Normal
0.6
481
Tumor
0.6
353
Tumor
0.5
422
Normal
0.5
755
Tumor
0.5
423
Tumor
0.5
432
Normal
0.5
111
Normal
0.5
867
Tumor
0.5
462
Normal
0.5
354
Normal
0.5
858
Normal
0.5
464
Normal
0.5
862
Normal
0.5
145
Tumor
0.5
446
Normal
0.5
136
Normal
0.5
393
Tumor
0.4
341
Tumor
0.4
818
Normal
0.4
451
Tumor
0.4
414
Normal
0.4
172
Normal
0.4
824
Normal
0.4
427
Tumor
0.4
472
Normal
0.4
664
Normal
0.4
126
Normal
0.4
413
Tumor
0.4
1027
Tumor
0.4
456
Normal
0.4
648
Normal
0.4
352
Normal
0.4
527
Tumor
0.4
426
Normal
0.4
421
Tumor
0.4
435
Tumor
0.4
141
Tumor
0.4
466
Normal
0.3
142
Normal
0.3
912
Normal
0.3
722
Normal
0.3
162
Normal
0.3
436
Normal
0.3
123
Tumor
0.3
666
Normal
0.3
342
Normal
0.3
394
Normal
0.3
534
Normal
0.3
647
Tumor
0.3
358
Normal
0.3
411
Tumor
0.3
756
Normal
0.3
884
Normal
0.3
113
Tumor
0.3
138
Normal
0.3
271
Tumor
0.3
452
Normal
0.3
232
Normal
0.3
186
Normal
0.3
866
Normal
0.3
777
Tumor
0.3
484
Normal
0.3
911
Tumor
0.3
861
Tumor
0.3
483
Tumor
0.3
468
Normal
0.3
161
Tumor
0.3
227
Tumor
0.3
463
Tumor
0.3
147
Tumor
0.3
188
Normal
0.3
425
Tumor
0.3
286
Normal
0.3
742
Normal
0.3
465
Tumor
0.2
573
Tumor
0.2
187
Tumor
0.2
128
Normal
0.2
444
Normal
0.2
852
Normal
0.2
114
Normal
0.2
698
Normal
0.2
124
Normal
0.2
741
Tumor
0.2
857
Tumor
0.2
1026
Normal
0.2
873
Tumor
0.2
913
Tumor
0.2
636
Normal
0.2
868
Normal
0.2
494
Normal
0.2
112
Tumor
0.2
392
Normal
0.2
135
Tumor
0.2
477
Tumor
0.2
557
Tumor
0.2
714
Normal
0.2
723
Tumor
0.2
786
Normal
0.2
1022
Normal
0.2
146
Normal
0.2
865
Tumor
0.2
618
Normal
0.2
864
Normal
0.2
863
Tumor
0.2
257
Tumor
0.2
686
Normal
0.2
137
Tumor
0.1
882
Normal
0.1
816
Normal
0.1
977
Tumor
0.1
415
Tumor
0.1
228
Normal
0.1
356
Normal
0.1
662
Normal
0.1
388
Normal
0.1
433
Tumor
0.1
474
Normal
0.1
641
Tumor
0.1
366
Normal
0.1
528
Normal
0.1
554
Normal
0.1
455
Tumor
0.1
376
Normal
0.1
171
Tumor
0.1
517
Tumor
0.1
284
Normal
0.1
344
Normal
0.1
813
Tumor
0.1
955
Tumor
0.1
212
Normal
0.1
728
Normal
0.1
914
Normal
0.1
185
Tumor
0.1
696
Normal
0.1
272
Normal
0.1
431
Tumor
0.1
627
Tumor
0.1
262
Normal
0.1
721
Tumor
0.1
1016
Normal
0.1
878
Normal
0.1
367
Tumor
0.1
716
Normal
0.1
874
Normal
0.1
125
Tumor
0.1
944
Normal
0.1
1045
Tumor
0.1
268
Normal
0.1
727
Tumor
0.1
478
Normal
0.1
445
Tumor
0.1
954
Normal
0.1
327
Tumor
0.1
568
Normal
0.1
938
Normal
0.1
396
Normal
0.1
724
Normal
0.1
258
Normal
0.1
685
Tumor
0.1
713
Tumor
0.1
672
Normal
0.0
744
Normal
0.0
616
Normal
0.0
267
Tumor
0.0
737
Tumor
0.0
498
Normal
0.0
328
Normal
0.0
514
Normal
0.0
915
Tumor
0.0
515
Tumor
0.0
663
Tumor
0.0
518
Normal
0.0
964
Normal
0.0
412
Normal
0.0
355
Tumor
0.0
546
Normal
0.0
357
Tumor
0.0
467
Tumor
0.0
526
Normal
0.0
224
Normal
0.0
553
Tumor
0.0
572
Normal
0.0
513
Tumor
0.0
1025
Tumor
0.0
533
Tumor
0.0
1028
Normal
0.0
563
Tumor
0.0
642
Normal
0.0
746
Normal
0.0
615
Tumor
0.0
416
Normal
0.0
665
Tumor
0.0
523
Tumor
0.0
368
Normal
0.0
715
Tumor
0.0
1032
Normal
0.0
982
Normal
0.0
461
Tumor
0.0
1014
Normal
0.0
738
Normal
0.0
386
Normal
0.0
384
Normal
0.0
558
Normal
-0.1
574
Normal
-0.1
434
Normal
-0.1
516
Normal
-0.1
922
Normal
-0.1
231
Tumor
-0.1
778
Normal
-0.1
926
Normal
-0.1
976
Normal
-0.1
487
Tumor
-0.1
365
Tumor
-0.1
443
Tumor
-0.1
617
Tumor
-0.1
364
Normal
-0.1
956
Normal
-0.1
978
Normal
-0.1
131
Tumor
-0.1
785
Tumor
-0.1
375
Tumor
-0.1
383
Tumor
-0.1
127
Tumor
-0.1
493
Tumor
-0.1
564
Normal
-0.1
918
Normal
-0.1
492
Normal
-0.1
952
Normal
-0.1
921
Tumor
-0.1
628
Normal
-0.1
488
Normal
-0.2
298
Normal
-0.2
1021
Tumor
-0.2
567
Tumor
-0.2
261
Tumor
-0.2
471
Tumor
-0.2
814
Normal
-0.2
1031
Tumor
-0.2
965
Tumor
-0.2
1041
Tumor
-0.2
1042
Normal
-0.2
851
Tumor
-0.2
984
Normal
-0.2
883
Tumor
-0.2
285
Tumor
-0.2
473
Tumor
-0.2
223
Tumor
-0.2
968
Normal
-0.2
967
Tumor
-0.2
497
Tumor
-0.2
545
Tumor
-0.2
745
Tumor
-0.2
916
Normal
-0.2
958
Normal
-0.2
362
Normal
-0.3
278
Normal
-0.3
924
Normal
-0.3
1043
Tumor
-0.3
448
Normal
-0.3
1046
Normal
-0.3
524
Normal
-0.3
963
Tumor
-0.3
937
Tumor
-0.3
881
Tumor
-0.3
312
Normal
-0.3
363
Tumor
-0.3
361
Tumor
-0.3
966
Normal
-0.3
1044
Normal
-0.3
313
Tumor
-0.3
823
Tumor
-0.3
343
Tumor
-0.4
975
Tumor
-0.4
817
Tumor
-0.4
391
Tumor
-0.4
538
Normal
-0.4
953
Tumor
-0.4
923
Tumor
-0.4
695
Tumor
-0.4
211
Tumor
-0.4
332
Normal
-0.4
925
Tumor
-0.4
571
Tumor
-0.4
447
Tumor
-0.4
525
Tumor
-0.5
697
Tumor
-0.5
877
Tumor
-0.5
314
Normal
-0.5
387
Tumor
-0.5
981
Tumor
-0.5
957
Tumor
-0.5
671
Tumor
-0.5
1015
Tumor
-0.5
815
Tumor
-0.5
951
Tumor
-0.5
385
Tumor
-0.5
297
Tumor
-0.5
743
Tumor
-0.5
277
Tumor
-0.6
1013
Tumor
-0.6
491
Tumor
-0.6
917
Tumor
-0.6
283
Tumor
-0.6
983
Tumor
-0.7
661
Tumor
-0.7
536
Normal
-0.7
395
Tumor
-0.7
537
Tumor
-0.7
943
Tumor
-0.8
311
Tumor
-0.8
331
Tumor
-0.8
351
Tumor
-0.8
535
Tumor
-0.9
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.