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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRMT1L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
16.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
15.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
8.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
7.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
6.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
4.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRMT1L is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
231
Samples
Sample
Description
TPM
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
14.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
7.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
5.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
5.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
4.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.7
545
Tumor
1.2
393
Tumor
1.1
817
Tumor
1.0
635
Tumor
0.9
443
Tumor
0.9
477
Tumor
0.9
471
Tumor
0.8
685
Tumor
0.8
915
Tumor
0.8
131
Tumor
0.7
951
Tumor
0.7
867
Tumor
0.7
271
Tumor
0.7
553
Tumor
0.7
1021
Tumor
0.7
491
Tumor
0.7
445
Tumor
0.7
981
Tumor
0.6
463
Tumor
0.6
977
Tumor
0.6
1031
Tumor
0.6
881
Tumor
0.6
865
Tumor
0.6
641
Tumor
0.6
523
Tumor
0.6
1041
Tumor
0.6
743
Tumor
0.6
227
Tumor
0.6
921
Tumor
0.6
715
Tumor
0.6
861
Tumor
0.6
351
Tumor
0.5
925
Tumor
0.5
355
Tumor
0.5
571
Tumor
0.5
211
Tumor
0.5
671
Tumor
0.5
113
Tumor
0.5
741
Tumor
0.5
877
Tumor
0.5
975
Tumor
0.5
777
Tumor
0.5
1013
Tumor
0.5
331
Tumor
0.5
1027
Tumor
0.5
213
Tumor
0.5
527
Tumor
0.5
1025
Tumor
0.4
943
Tumor
0.4
697
Tumor
0.4
135
Tumor
0.4
724
Normal
0.4
357
Tumor
0.4
191
Tumor
0.4
385
Tumor
0.4
425
Tumor
0.4
411
Tumor
0.4
517
Tumor
0.4
487
Tumor
0.4
221
Tumor
0.4
327
Tumor
0.4
515
Tumor
0.4
513
Tumor
0.4
557
Tumor
0.4
141
Tumor
0.3
481
Tumor
0.3
415
Tumor
0.3
277
Tumor
0.3
493
Tumor
0.3
257
Tumor
0.3
785
Tumor
0.3
737
Tumor
0.3
533
Tumor
0.3
615
Tumor
0.2
431
Tumor
0.2
343
Tumor
0.2
125
Tumor
0.2
137
Tumor
0.2
297
Tumor
0.2
483
Tumor
0.2
695
Tumor
0.2
455
Tumor
0.2
313
Tumor
0.2
145
Tumor
0.2
361
Tumor
0.2
395
Tumor
0.2
661
Tumor
0.2
923
Tumor
0.1
171
Tumor
0.1
435
Tumor
0.1
375
Tumor
0.1
944
Normal
0.1
161
Tumor
0.1
461
Tumor
0.1
467
Tumor
0.1
451
Tumor
0.1
195
Tumor
0.1
232
Normal
0.1
187
Tumor
0.1
537
Tumor
0.1
465
Tumor
0.1
433
Tumor
0.1
112
Tumor
0.1
953
Tumor
0.1
367
Tumor
0.1
456
Normal
0.1
391
Tumor
0.1
857
Tumor
0.1
261
Tumor
0.1
738
Normal
0.1
722
Normal
0.0
447
Tumor
0.0
814
Normal
0.0
1043
Tumor
0.0
714
Normal
0.0
564
Normal
0.0
873
Tumor
0.0
913
Tumor
0.0
466
Normal
0.0
366
Normal
0.0
728
Normal
0.0
956
Normal
0.0
696
Normal
0.0
955
Tumor
0.0
636
Normal
0.0
1026
Normal
0.0
258
Normal
0.0
911
Tumor
0.0
228
Normal
0.0
866
Normal
0.0
912
Normal
0.0
468
Normal
0.0
353
Tumor
N/A
518
Normal
0.0
926
Normal
0.0
358
Normal
0.0
526
Normal
0.0
497
Tumor
0.0
917
Tumor
0.0
516
Normal
0.0
464
Normal
0.0
534
Normal
0.0
572
Normal
0.0
983
Tumor
0.0
267
Tumor
0.0
954
Normal
0.0
916
Normal
0.0
492
Normal
0.0
858
Normal
0.0
474
Normal
0.0
1028
Normal
0.0
222
Normal
0.0
862
Normal
0.0
924
Normal
0.0
617
Tumor
0.0
918
Normal
0.0
452
Normal
0.0
883
Tumor
0.0
568
Normal
0.0
262
Normal
-0.1
472
Normal
-0.1
218
Normal
-0.1
147
Tumor
-0.1
1032
Normal
-0.1
272
Normal
-0.1
1015
Tumor
-0.1
132
Normal
-0.1
824
Normal
-0.1
298
Normal
-0.1
224
Normal
-0.1
363
Tumor
-0.1
462
Normal
-0.1
436
Normal
-0.1
721
Tumor
-0.1
1016
Normal
-0.1
966
Normal
-0.1
882
Normal
-0.1
426
Normal
-0.1
484
Normal
-0.1
354
Normal
-0.1
952
Normal
-0.1
1014
Normal
-0.1
755
Tumor
-0.1
666
Normal
-0.1
231
Tumor
-0.1
428
Normal
-0.1
525
Tumor
-0.1
142
Normal
-0.1
1045
Tumor
-0.1
332
Normal
-0.1
448
Normal
-0.1
756
Normal
-0.1
818
Normal
-0.1
922
Normal
-0.1
482
Normal
-0.1
968
Normal
-0.1
672
Normal
-0.1
1022
Normal
-0.1
138
Normal
-0.1
185
Tumor
-0.1
284
Normal
-0.1
815
Tumor
-0.1
136
Normal
-0.1
618
Normal
-0.1
884
Normal
-0.1
938
Normal
-0.1
478
Normal
-0.1
727
Tumor
-0.1
268
Normal
-0.1
874
Normal
-0.1
863
Tumor
-0.1
642
Normal
-0.1
148
Normal
-0.1
574
Normal
-0.1
558
Normal
-0.1
286
Normal
-0.1
446
Normal
-0.1
914
Normal
-0.1
744
Normal
-0.1
422
Normal
-0.1
723
Tumor
-0.1
356
Normal
-0.1
982
Normal
-0.1
217
Tumor
-0.1
746
Normal
-0.1
686
Normal
-0.1
648
Normal
-0.1
413
Tumor
-0.1
416
Normal
-0.1
365
Tumor
-0.1
328
Normal
-0.1
424
Normal
-0.1
1042
Normal
-0.1
396
Normal
-0.1
664
Normal
-0.1
488
Normal
-0.1
628
Normal
-0.1
745
Tumor
-0.1
196
Normal
-0.1
342
Normal
-0.1
823
Tumor
-0.1
412
Normal
-0.2
421
Tumor
-0.2
864
Normal
-0.2
878
Normal
-0.2
662
Normal
-0.2
162
Normal
-0.2
967
Tumor
-0.2
434
Normal
-0.2
563
Tumor
-0.2
984
Normal
-0.2
146
Normal
-0.2
554
Normal
-0.2
364
Normal
-0.2
376
Normal
-0.2
423
Tumor
-0.2
514
Normal
-0.2
742
Normal
-0.2
212
Normal
-0.2
427
Tumor
-0.2
786
Normal
-0.2
311
Tumor
-0.2
444
Normal
-0.2
387
Tumor
-0.2
538
Normal
-0.2
546
Normal
-0.2
414
Normal
-0.2
352
Normal
-0.2
314
Normal
-0.2
392
Normal
-0.2
816
Normal
-0.2
528
Normal
-0.2
188
Normal
-0.2
778
Normal
-0.2
852
Normal
-0.2
716
Normal
-0.2
524
Normal
-0.2
432
Normal
-0.2
362
Normal
-0.2
616
Normal
-0.2
868
Normal
-0.2
186
Normal
-0.2
627
Tumor
-0.2
368
Normal
-0.2
494
Normal
-0.2
978
Normal
-0.2
1046
Normal
-0.2
388
Normal
-0.2
278
Normal
-0.2
964
Normal
-0.2
536
Normal
-0.2
192
Normal
-0.2
384
Normal
-0.2
958
Normal
-0.3
498
Normal
-0.3
394
Normal
-0.3
214
Normal
-0.3
976
Normal
-0.3
172
Normal
-0.3
663
Tumor
-0.3
383
Tumor
-0.3
567
Tumor
-0.3
283
Tumor
-0.3
647
Tumor
-0.3
344
Normal
-0.3
937
Tumor
-0.3
128
Normal
-0.3
111
Normal
-0.3
386
Normal
-0.3
713
Tumor
-0.3
1044
Normal
-0.3
312
Normal
-0.4
114
Normal
-0.4
965
Tumor
-0.4
535
Tumor
-0.4
963
Tumor
-0.4
851
Tumor
-0.4
473
Tumor
-0.4
698
Normal
-0.4
124
Normal
-0.4
813
Tumor
-0.4
123
Tumor
-0.4
285
Tumor
-0.4
126
Normal
-0.5
223
Tumor
-0.5
573
Tumor
-0.6
665
Tumor
-0.6
127
Tumor
-0.7
341
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
