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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLBD1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
110.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
83.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
66.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
40.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
39.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
32.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
32.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
31.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
23.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
18.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
16.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
13.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
9.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
6.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
6.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
3.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
2.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
2.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
2.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
1.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
1.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
1.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLBD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
351.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
235.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
149.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
137.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
88.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
75.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
53.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
50.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
42.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
37.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
36.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
36.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
33.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
32.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
30.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
23.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
22.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
5.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
2.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
1.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
1.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
1.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
1.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
1.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
1.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
517
Tumor
2.2
917
Tumor
2.1
367
Tumor
1.8
385
Tumor
1.6
421
Tumor
1.5
467
Tumor
1.5
331
Tumor
1.4
375
Tumor
1.3
311
Tumor
1.3
661
Tumor
1.2
211
Tumor
1.2
125
Tumor
1.1
983
Tumor
0.9
395
Tumor
0.8
463
Tumor
0.8
545
Tumor
0.7
195
Tumor
0.7
343
Tumor
0.7
131
Tumor
0.7
391
Tumor
0.7
937
Tumor
0.7
268
Normal
0.7
444
Normal
0.7
394
Normal
0.6
851
Tumor
0.6
352
Normal
0.6
478
Normal
0.6
538
Normal
0.5
356
Normal
0.5
912
Normal
0.5
537
Tumor
0.5
916
Normal
0.5
884
Normal
0.5
713
Tumor
0.5
938
Normal
0.5
824
Normal
0.4
328
Normal
0.4
472
Normal
0.4
422
Normal
0.4
145
Tumor
0.4
1016
Normal
0.4
778
Normal
0.4
332
Normal
0.4
714
Normal
0.4
297
Tumor
0.4
124
Normal
0.4
574
Normal
0.4
744
Normal
0.4
447
Tumor
0.4
524
Normal
0.3
952
Normal
0.3
432
Normal
0.3
188
Normal
0.3
424
Normal
0.3
272
Normal
0.3
823
Tumor
0.3
262
Normal
0.3
866
Normal
0.3
716
Normal
0.3
874
Normal
0.3
148
Normal
0.3
314
Normal
0.3
368
Normal
0.3
816
Normal
0.3
1026
Normal
0.3
468
Normal
0.3
354
Normal
0.3
462
Normal
0.3
878
Normal
0.2
662
Normal
0.2
428
Normal
0.2
414
Normal
0.2
426
Normal
0.2
132
Normal
0.2
492
Normal
0.2
858
Normal
0.2
126
Normal
0.2
351
Tumor
0.2
1044
Normal
0.2
191
Tumor
0.2
628
Normal
0.2
877
Tumor
0.2
344
Normal
0.2
386
Normal
0.2
498
Normal
0.2
497
Tumor
0.2
286
Normal
0.2
883
Tumor
0.2
1014
Normal
0.2
232
Normal
0.1
636
Normal
0.1
393
Tumor
0.1
1046
Normal
0.1
1032
Normal
0.1
966
Normal
0.1
224
Normal
0.1
813
Tumor
0.1
466
Normal
0.1
212
Normal
0.1
358
Normal
0.1
1015
Tumor
0.1
376
Normal
0.1
573
Tumor
0.1
135
Tumor
0.1
978
Normal
0.1
283
Tumor
0.1
455
Tumor
0.1
786
Normal
0.1
192
Normal
0.1
862
Normal
0.1
114
Normal
0.1
436
Normal
0.1
664
Normal
0.1
482
Normal
0.0
568
Normal
0.0
162
Normal
0.0
958
Normal
0.0
671
Tumor
0.0
362
Normal
0.0
312
Normal
0.0
1042
Normal
0.0
954
Normal
0.0
616
Normal
0.0
818
Normal
0.0
672
Normal
0.0
223
Tumor
0.0
464
Normal
0.0
342
Normal
0.0
738
Normal
0.0
868
Normal
0.0
298
Normal
0.0
518
Normal
0.0
446
Normal
0.0
258
Normal
0.0
618
Normal
0.0
138
Normal
0.0
571
Tumor
0.0
852
Normal
0.0
965
Tumor
0.0
228
Normal
0.0
491
Tumor
0.0
984
Normal
0.0
456
Normal
-0.1
452
Normal
-0.1
434
Normal
-0.1
697
Tumor
-0.1
136
Normal
-0.1
355
Tumor
-0.1
814
Normal
-0.1
815
Tumor
-0.1
943
Tumor
-0.1
1028
Normal
-0.1
944
Normal
-0.1
147
Tumor
-0.1
384
Normal
-0.1
516
Normal
-0.1
388
Normal
-0.1
146
Normal
-0.1
722
Normal
-0.1
494
Normal
-0.1
976
Normal
-0.1
277
Tumor
-0.1
425
Tumor
-0.1
698
Normal
-0.1
488
Normal
-0.1
392
Normal
-0.1
742
Normal
-0.1
217
Tumor
-0.1
461
Tumor
-0.2
278
Normal
-0.2
128
Normal
-0.2
213
Tumor
-0.2
926
Normal
-0.2
187
Tumor
-0.2
416
Normal
-0.2
172
Normal
-0.2
196
Normal
-0.2
1022
Normal
-0.2
982
Normal
-0.2
686
Normal
-0.2
696
Normal
-0.2
918
Normal
-0.2
186
Normal
-0.2
617
Tumor
-0.2
873
Tumor
-0.2
396
Normal
-0.2
111
Normal
-0.2
922
Normal
-0.3
665
Tumor
-0.3
257
Tumor
-0.3
185
Tumor
-0.3
914
Normal
-0.3
964
Normal
-0.3
364
Normal
-0.3
642
Normal
-0.3
214
Normal
-0.3
546
Normal
-0.3
648
Normal
-0.3
222
Normal
-0.3
161
Tumor
-0.3
857
Tumor
-0.3
366
Normal
-0.3
956
Normal
-0.3
666
Normal
-0.3
113
Tumor
-0.3
481
Tumor
-0.3
415
Tumor
-0.3
526
Normal
-0.3
514
Normal
-0.3
558
Normal
-0.3
715
Tumor
-0.4
284
Normal
-0.4
924
Normal
-0.4
817
Tumor
-0.4
755
Tumor
-0.4
534
Normal
-0.4
723
Tumor
-0.4
261
Tumor
-0.4
218
Normal
-0.4
285
Tumor
-0.4
756
Normal
-0.4
925
Tumor
-0.4
955
Tumor
-0.4
721
Tumor
-0.4
341
Tumor
-0.4
882
Normal
-0.4
563
Tumor
-0.4
564
Normal
-0.4
963
Tumor
-0.4
528
Normal
-0.4
536
Normal
-0.4
383
Tumor
-0.4
142
Normal
-0.5
474
Normal
-0.5
572
Normal
-0.5
746
Normal
-0.5
554
Normal
-0.5
353
Tumor
-0.5
728
Normal
-0.5
137
Tumor
-0.5
387
Tumor
-0.5
615
Tumor
-0.5
363
Tumor
-0.5
361
Tumor
-0.5
141
Tumor
-0.5
412
Normal
-0.5
413
Tumor
-0.5
968
Normal
-0.5
451
Tumor
-0.6
448
Normal
-0.6
427
Tumor
-0.6
313
Tumor
-0.6
864
Normal
-0.6
881
Tumor
-0.6
493
Tumor
-0.7
365
Tumor
-0.7
567
Tumor
-0.7
535
Tumor
-0.7
484
Normal
-0.7
663
Tumor
-0.7
915
Tumor
-0.7
271
Tumor
-0.7
465
Tumor
-0.7
923
Tumor
-0.7
641
Tumor
-0.7
981
Tumor
-0.7
743
Tumor
-0.7
433
Tumor
-0.7
957
Tumor
-0.8
1043
Tumor
-0.8
231
Tumor
-0.8
1025
Tumor
-0.8
951
Tumor
-0.8
127
Tumor
-0.8
1045
Tumor
-0.8
443
Tumor
-0.8
785
Tumor
-0.8
423
Tumor
-0.8
913
Tumor
-0.9
525
Tumor
-0.9
1041
Tumor
-0.9
471
Tumor
-0.9
515
Tumor
-0.9
627
Tumor
-0.9
431
Tumor
-0.9
227
Tumor
-0.9
911
Tumor
-0.9
863
Tumor
-0.9
171
Tumor
-0.9
695
Tumor
-0.9
327
Tumor
-0.9
357
Tumor
-1.0
975
Tumor
-1.0
647
Tumor
-1.0
267
Tumor
-1.0
553
Tumor
-1.0
487
Tumor
-1.0
953
Tumor
-1.0
867
Tumor
-1.0
112
Tumor
-1.0
557
Tumor
-1.1
1031
Tumor
-1.1
1021
Tumor
-1.1
737
Tumor
-1.1
861
Tumor
-1.1
685
Tumor
-1.1
921
Tumor
-1.1
513
Tumor
-1.1
977
Tumor
-1.1
527
Tumor
-1.1
483
Tumor
-1.2
1027
Tumor
-1.2
533
Tumor
-1.2
727
Tumor
-1.2
221
Tumor
-1.2
967
Tumor
-1.2
865
Tumor
-1.3
724
Normal
-1.3
123
Tumor
-1.3
445
Tumor
-1.3
477
Tumor
-1.3
435
Tumor
-1.3
1013
Tumor
-1.4
411
Tumor
-1.4
635
Tumor
-1.5
745
Tumor
-1.5
777
Tumor
-1.5
523
Tumor
-1.7
473
Tumor
-1.8
741
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
