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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM25 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
14.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
12.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
11.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
6.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
6.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
5.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
5.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
2.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TRIM25 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
231
Samples
Sample
Description
TPM
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
25.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
21.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
21.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
19.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
18.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
17.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
16.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
15.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
14.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
14.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
13.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
12.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
12.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
6.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
3.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.6
527
Tumor
0.4
745
Tumor
0.4
777
Tumor
0.4
113
Tumor
0.4
955
Tumor
0.4
957
Tumor
0.3
1015
Tumor
0.3
393
Tumor
0.3
557
Tumor
0.3
554
Normal
0.3
746
Normal
0.3
911
Tumor
0.3
311
Tumor
0.2
257
Tumor
0.2
137
Tumor
0.2
981
Tumor
0.2
538
Normal
0.2
1028
Normal
0.2
1022
Normal
0.2
214
Normal
0.2
636
Normal
0.2
966
Normal
0.2
953
Tumor
0.2
1044
Normal
0.2
534
Normal
0.2
913
Tumor
0.2
628
Normal
0.2
515
Tumor
0.2
128
Normal
0.2
465
Tumor
0.2
434
Normal
0.2
141
Tumor
0.2
518
Normal
0.2
111
Normal
0.2
284
Normal
0.2
865
Tumor
0.2
568
Normal
0.2
952
Normal
0.2
114
Normal
0.2
445
Tumor
0.2
558
Normal
0.2
968
Normal
0.2
721
Tumor
0.1
537
Tumor
0.1
536
Normal
0.1
528
Normal
0.1
286
Normal
0.1
778
Normal
0.1
477
Tumor
0.1
663
Tumor
0.1
617
Tumor
0.1
648
Normal
0.1
147
Tumor
0.1
861
Tumor
0.1
327
Tumor
0.1
474
Normal
0.1
262
Normal
0.1
436
Normal
0.1
466
Normal
0.1
131
Tumor
0.1
126
Normal
0.1
448
Normal
0.1
494
Normal
0.1
741
Tumor
0.1
124
Normal
0.1
412
Normal
0.1
427
Tumor
0.1
864
Normal
0.1
824
Normal
0.1
925
Tumor
0.1
125
Tumor
0.1
964
Normal
0.1
212
Normal
0.1
357
Tumor
0.1
728
Normal
0.1
696
Normal
0.1
278
Normal
0.1
526
Normal
0.1
312
Normal
0.1
727
Tumor
0.1
545
Tumor
0.1
1021
Tumor
0.1
344
Normal
0.1
228
Normal
0.1
1026
Normal
0.1
977
Tumor
0.1
488
Normal
0.1
395
Tumor
0.1
738
Normal
0.1
786
Normal
0.1
136
Normal
0.1
878
Normal
0.1
452
Normal
0.1
218
Normal
0.1
965
Tumor
0.1
742
Normal
0.1
924
Normal
0.1
816
Normal
0.1
367
Tumor
0.1
487
Tumor
0.1
411
Tumor
0.1
664
Normal
0.1
368
Normal
0.1
1016
Normal
0.1
433
Tumor
0.1
1032
Normal
0.1
926
Normal
0.1
546
Normal
0.1
142
Normal
0.1
866
Normal
0.1
863
Tumor
0.1
1014
Normal
0.1
918
Normal
0.1
524
Normal
0.1
884
Normal
0.1
867
Tumor
0.1
261
Tumor
0.1
984
Normal
0.1
484
Normal
0.1
914
Normal
0.1
574
Normal
0.1
695
Tumor
0.1
1046
Normal
0.1
416
Normal
0.1
138
Normal
0.1
716
Normal
0.1
356
Normal
0.1
662
Normal
0.1
572
Normal
0.1
978
Normal
0.1
956
Normal
0.1
362
Normal
0.1
982
Normal
0.1
1025
Tumor
0.1
272
Normal
0.1
564
Normal
0.1
462
Normal
0.1
415
Tumor
0.0
922
Normal
0.0
567
Tumor
0.0
618
Normal
0.0
724
Normal
0.0
697
Tumor
0.0
481
Tumor
0.0
616
Normal
0.0
944
Normal
0.0
1041
Tumor
0.0
755
Tumor
0.0
132
Normal
0.0
916
Normal
0.0
976
Normal
0.0
714
Normal
0.0
525
Tumor
0.0
468
Normal
0.0
188
Normal
0.0
983
Tumor
0.0
722
Normal
0.0
461
Tumor
0.0
573
Tumor
0.0
938
Normal
0.0
862
Normal
0.0
1042
Normal
0.0
627
Tumor
0.0
915
Tumor
0.0
232
Normal
0.0
516
Normal
0.0
686
Normal
0.0
858
Normal
0.0
723
Tumor
0.0
341
Tumor
0.0
353
Tumor
0.0
553
Tumor
0.0
268
Normal
0.0
224
Normal
0.0
743
Tumor
0.0
666
Normal
0.0
813
Tumor
0.0
148
Normal
0.0
852
Normal
0.0
314
Normal
0.0
514
Normal
0.0
493
Tumor
0.0
222
Normal
0.0
868
Normal
0.0
478
Normal
0.0
451
Tumor
0.0
498
Normal
0.0
873
Tumor
0.0
472
Normal
0.0
191
Tumor
0.0
112
Tumor
0.0
172
Normal
0.0
162
Normal
0.0
874
Normal
0.0
446
Normal
0.0
737
Tumor
0.0
196
Normal
0.0
912
Normal
0.0
492
Normal
0.0
428
Normal
0.0
364
Normal
0.0
423
Tumor
0.0
882
Normal
0.0
375
Tumor
0.0
533
Tumor
0.0
756
Normal
0.0
298
Normal
0.0
951
Tumor
0.0
431
Tumor
0.0
414
Normal
0.0
422
Normal
0.0
376
Normal
0.0
491
Tumor
0.0
392
Normal
0.0
258
Normal
0.0
958
Normal
0.0
482
Normal
0.0
464
Normal
0.0
328
Normal
0.0
355
Tumor
0.0
642
Normal
0.0
386
Normal
0.0
195
Tumor
0.0
823
Tumor
0.0
1043
Tumor
0.0
396
Normal
0.0
943
Tumor
0.0
387
Tumor
0.0
937
Tumor
0.0
963
Tumor
0.0
231
Tumor
0.0
467
Tumor
0.0
394
Normal
0.0
1013
Tumor
0.0
366
Normal
0.0
713
Tumor
0.0
171
Tumor
0.0
426
Normal
0.0
424
Normal
0.0
186
Normal
0.0
271
Tumor
0.0
698
Normal
0.0
313
Tumor
0.0
883
Tumor
0.0
161
Tumor
0.0
954
Normal
0.0
456
Normal
0.0
814
Normal
0.0
818
Normal
0.0
146
Normal
0.0
211
Tumor
0.0
1031
Tumor
0.0
332
Normal
0.0
523
Tumor
0.0
352
Normal
-0.1
744
Normal
-0.1
365
Tumor
-0.1
388
Normal
-0.1
444
Normal
-0.1
383
Tumor
-0.1
192
Normal
-0.1
1045
Tumor
-0.1
432
Normal
-0.1
497
Tumor
-0.1
283
Tumor
-0.1
455
Tumor
-0.1
447
Tumor
-0.1
267
Tumor
-0.1
217
Tumor
-0.1
851
Tumor
-0.1
715
Tumor
-0.1
213
Tumor
-0.1
127
Tumor
-0.1
358
Normal
-0.1
384
Normal
-0.1
672
Normal
-0.1
785
Tumor
-0.1
145
Tumor
-0.1
187
Tumor
-0.1
185
Tumor
-0.1
421
Tumor
-0.1
342
Normal
-0.1
917
Tumor
-0.1
483
Tumor
-0.1
881
Tumor
-0.1
223
Tumor
-0.2
435
Tumor
-0.2
647
Tumor
-0.2
354
Normal
-0.2
535
Tumor
-0.2
123
Tumor
-0.2
443
Tumor
-0.2
391
Tumor
-0.2
297
Tumor
-0.2
277
Tumor
-0.2
413
Tumor
-0.2
975
Tumor
-0.2
967
Tumor
-0.2
923
Tumor
-0.2
513
Tumor
-0.2
471
Tumor
-0.2
385
Tumor
-0.2
425
Tumor
-0.2
571
Tumor
-0.2
615
Tumor
-0.2
563
Tumor
-0.2
135
Tumor
-0.2
363
Tumor
-0.2
361
Tumor
-0.2
661
Tumor
-0.3
343
Tumor
-0.3
635
Tumor
-0.3
817
Tumor
-0.3
285
Tumor
-0.3
331
Tumor
-0.3
641
Tumor
-0.3
665
Tumor
-0.3
857
Tumor
-0.3
815
Tumor
-0.3
921
Tumor
-0.3
221
Tumor
-0.4
463
Tumor
-0.4
517
Tumor
-0.4
685
Tumor
-0.4
473
Tumor
-0.4
351
Tumor
-0.4
227
Tumor
-0.5
671
Tumor
-0.5
877
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
