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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF170 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
24.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
15.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
15.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
13.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
12.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
11.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
10.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
7.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
7.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
3.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
3.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF170 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
47.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
46.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
13.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
6.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
6.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
6.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
5.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
5.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
4.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
4.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
4.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
3.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
2.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
1.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
641
Tumor
1.3
231
Tumor
1.2
685
Tumor
0.9
222
Normal
0.8
452
Normal
0.8
944
Normal
0.7
221
Tumor
0.7
342
Normal
0.7
148
Normal
0.7
878
Normal
0.7
648
Normal
0.7
232
Normal
0.7
488
Normal
0.7
258
Normal
0.7
426
Normal
0.7
196
Normal
0.7
358
Normal
0.7
314
Normal
0.7
938
Normal
0.7
1014
Normal
0.7
422
Normal
0.7
186
Normal
0.7
481
Tumor
0.7
132
Normal
0.6
564
Normal
0.6
435
Tumor
0.6
568
Normal
0.6
111
Normal
0.6
278
Normal
0.6
128
Normal
0.6
714
Normal
0.6
572
Normal
0.6
494
Normal
0.6
298
Normal
0.6
642
Normal
0.6
162
Normal
0.6
396
Normal
0.6
484
Normal
0.6
332
Normal
0.5
636
Normal
0.5
172
Normal
0.5
1026
Normal
0.5
984
Normal
0.5
952
Normal
0.5
354
Normal
0.5
744
Normal
0.5
954
Normal
0.5
482
Normal
0.5
672
Normal
0.5
574
Normal
0.5
664
Normal
0.5
554
Normal
0.5
696
Normal
0.5
662
Normal
0.5
618
Normal
0.5
1046
Normal
0.5
388
Normal
0.5
136
Normal
0.5
981
Tumor
0.5
526
Normal
0.5
471
Tumor
0.5
394
Normal
0.5
1016
Normal
0.5
922
Normal
0.5
635
Tumor
0.5
356
Normal
0.5
723
Tumor
0.5
436
Normal
0.5
534
Normal
0.5
466
Normal
0.5
412
Normal
0.5
498
Normal
0.5
1044
Normal
0.5
518
Normal
0.4
344
Normal
0.4
472
Normal
0.4
686
Normal
0.4
514
Normal
0.4
882
Normal
0.4
722
Normal
0.4
218
Normal
0.4
462
Normal
0.4
214
Normal
0.4
914
Normal
0.4
926
Normal
0.4
428
Normal
0.4
376
Normal
0.4
955
Tumor
0.4
114
Normal
0.4
124
Normal
0.4
142
Normal
0.4
228
Normal
0.4
866
Normal
0.4
414
Normal
0.4
277
Tumor
0.4
448
Normal
0.4
464
Normal
0.4
312
Normal
0.4
918
Normal
0.4
468
Normal
0.4
858
Normal
0.4
666
Normal
0.4
912
Normal
0.4
1027
Tumor
0.4
818
Normal
0.4
328
Normal
0.4
424
Normal
0.4
982
Normal
0.4
364
Normal
0.4
616
Normal
0.4
516
Normal
0.4
746
Normal
0.3
742
Normal
0.3
528
Normal
0.3
286
Normal
0.3
728
Normal
0.3
262
Normal
0.3
272
Normal
0.3
698
Normal
0.3
195
Tumor
0.3
628
Normal
0.3
271
Tumor
0.3
911
Tumor
0.3
862
Normal
0.3
432
Normal
0.3
824
Normal
0.3
716
Normal
0.3
268
Normal
0.3
492
Normal
0.3
366
Normal
0.3
261
Tumor
0.3
416
Normal
0.3
816
Normal
0.3
352
Normal
0.3
976
Normal
0.3
456
Normal
0.3
474
Normal
0.3
884
Normal
0.3
956
Normal
0.3
978
Normal
0.3
786
Normal
0.3
738
Normal
0.2
977
Tumor
0.2
113
Tumor
0.2
392
Normal
0.2
1032
Normal
0.2
284
Normal
0.2
368
Normal
0.2
384
Normal
0.2
975
Tumor
0.2
755
Tumor
0.2
778
Normal
0.2
813
Tumor
0.2
524
Normal
0.2
446
Normal
0.2
546
Normal
0.2
386
Normal
0.2
868
Normal
0.2
123
Tumor
0.2
527
Tumor
0.2
1022
Normal
0.2
558
Normal
0.2
1042
Normal
0.2
343
Tumor
0.2
874
Normal
0.2
615
Tumor
0.2
362
Normal
0.2
146
Normal
0.1
188
Normal
0.1
138
Normal
0.1
224
Normal
0.1
756
Normal
0.1
553
Tumor
0.1
444
Normal
0.1
697
Tumor
0.1
924
Normal
0.1
126
Normal
0.1
465
Tumor
0.1
538
Normal
0.1
192
Normal
0.1
864
Normal
0.1
1043
Tumor
0.1
1013
Tumor
0.0
745
Tumor
0.0
478
Normal
0.0
1028
Normal
0.0
433
Tumor
0.0
212
Normal
0.0
451
Tumor
0.0
393
Tumor
0.0
434
Normal
0.0
513
Tumor
0.0
852
Normal
0.0
217
Tumor
0.0
257
Tumor
0.0
741
Tumor
0.0
713
Tumor
0.0
881
Tumor
0.0
331
Tumor
0.0
964
Normal
0.0
1025
Tumor
0.0
915
Tumor
0.0
814
Normal
0.0
191
Tumor
0.0
385
Tumor
0.0
1015
Tumor
0.0
1045
Tumor
-0.1
223
Tumor
-0.1
413
Tumor
-0.1
863
Tumor
-0.1
536
Normal
-0.1
921
Tumor
-0.1
966
Normal
-0.1
627
Tumor
-0.1
297
Tumor
-0.1
958
Normal
-0.1
327
Tumor
-0.1
423
Tumor
-0.1
391
Tumor
-0.1
145
Tumor
-0.1
785
Tumor
-0.1
695
Tumor
-0.1
557
Tumor
-0.1
365
Tumor
-0.1
493
Tumor
-0.1
351
Tumor
-0.2
395
Tumor
-0.2
112
Tumor
-0.2
131
Tumor
-0.2
467
Tumor
-0.2
455
Tumor
-0.2
1031
Tumor
-0.2
497
Tumor
-0.2
1021
Tumor
-0.2
743
Tumor
-0.2
353
Tumor
-0.2
877
Tumor
-0.2
473
Tumor
-0.2
227
Tumor
-0.2
375
Tumor
-0.2
671
Tumor
-0.2
523
Tumor
-0.2
415
Tumor
-0.2
535
Tumor
-0.2
357
Tumor
-0.2
571
Tumor
-0.2
861
Tumor
-0.2
823
Tumor
-0.3
665
Tumor
-0.3
171
Tumor
-0.3
883
Tumor
-0.3
968
Normal
-0.3
857
Tumor
-0.3
873
Tumor
-0.3
463
Tumor
-0.3
491
Tumor
-0.3
913
Tumor
-0.3
363
Tumor
-0.3
563
Tumor
-0.3
125
Tumor
-0.3
427
Tumor
-0.3
361
Tumor
-0.3
727
Tumor
-0.3
313
Tumor
-0.3
617
Tumor
-0.3
137
Tumor
-0.3
411
Tumor
-0.3
135
Tumor
-0.4
341
Tumor
-0.4
917
Tumor
-0.4
311
Tumor
-0.4
161
Tumor
-0.4
187
Tumor
-0.4
916
Normal
-0.5
817
Tumor
-0.5
724
Normal
-0.5
477
Tumor
-0.5
185
Tumor
-0.5
443
Tumor
-0.5
213
Tumor
-0.5
445
Tumor
-0.5
573
Tumor
-0.5
147
Tumor
-0.5
431
Tumor
-0.5
447
Tumor
-0.5
267
Tumor
-0.5
487
Tumor
-0.5
421
Tumor
-0.6
663
Tumor
-0.6
1041
Tumor
-0.6
721
Tumor
-0.6
951
Tumor
-0.6
383
Tumor
-0.6
515
Tumor
-0.6
943
Tumor
-0.6
867
Tumor
-0.7
461
Tumor
-0.7
647
Tumor
-0.7
355
Tumor
-0.7
141
Tumor
-0.7
937
Tumor
-0.7
925
Tumor
-0.7
533
Tumor
-0.7
483
Tumor
-0.8
127
Tumor
-0.8
525
Tumor
-0.8
367
Tumor
-0.8
963
Tumor
-0.9
211
Tumor
-0.9
285
Tumor
-0.9
661
Tumor
-0.9
737
Tumor
-0.9
865
Tumor
-0.9
517
Tumor
-1.0
851
Tumor
-1.0
715
Tumor
-1.0
983
Tumor
-1.0
283
Tumor
-1.0
387
Tumor
-1.1
953
Tumor
-1.1
567
Tumor
-1.1
815
Tumor
-1.2
777
Tumor
-1.2
923
Tumor
-1.2
545
Tumor
-1.2
425
Tumor
-1.3
957
Tumor
-1.5
967
Tumor
-1.7
537
Tumor
-1.7
965
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
