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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EPHX2 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
60.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
295.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
258.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
226.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
220.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
214.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
204.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
198.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
192.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
188.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
182.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
180.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
178.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
176.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
174.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
169.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
164.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
162.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
160.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
160.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
157.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
156.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
152.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
149.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
147.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
147.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
146.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
144.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
142.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
137.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
136.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
136.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
132.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
131.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
131.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
130.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
127.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
121.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
121.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
121.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
119.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
118.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
117.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
116.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
116.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
115.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
113.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
112.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
111.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
110.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
109.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
108.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
105.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
104.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
104.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
103.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
103.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
102.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
101.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
101.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
101.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
100.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
99.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
98.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
98.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
96.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
96.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
96.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
95.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
94.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
93.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
92.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
92.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
92.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
92.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
91.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
91.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
90.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
90.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
89.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
89.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
88.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
87.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
87.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
85.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
84.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
84.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
84.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
84.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
84.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
84.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
83.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
83.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
81.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
80.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
80.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
79.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
78.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
77.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
76.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
76.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
75.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
75.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
74.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
74.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
74.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
74.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
74.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
74.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
74.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
74.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
73.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
72.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
72.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
72.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
72.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
71.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
71.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
71.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
70.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
70.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
69.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
69.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
69.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
68.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
68.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
68.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
68.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
67.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
66.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
65.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
65.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
65.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
64.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
64.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
63.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
62.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
61.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
61.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
60.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
60.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
59.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
59.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
58.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
58.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
57.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
57.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
57.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
57.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
56.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
56.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
56.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
56.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
56.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
55.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
55.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
55.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
55.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
55.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
55.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
55.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
54.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
54.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
53.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
53.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
53.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
53.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
52.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
52.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
51.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
51.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
50.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
50.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
49.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
49.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
48.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
48.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
47.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
47.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
47.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
47.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
47.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
46.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
45.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
44.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
44.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
44.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
43.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
43.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
43.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
42.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
41.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
41.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
41.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
40.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
40.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
40.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
40.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
40.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
39.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
39.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
39.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
38.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
38.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
38.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
38.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
38.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
37.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
37.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
36.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
36.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
35.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
34.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
34.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
33.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
32.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
32.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
31.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
31.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
30.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
30.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
29.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
29.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
29.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
29.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
28.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
28.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
27.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
27.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
27.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
27.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
26.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
26.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
25.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
25.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
24.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
24.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
24.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
24.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
22.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
22.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
21.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
21.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
20.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
20.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
20.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
19.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
19.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
18.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
17.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
12.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
7.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
2.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
EPHX2 is validated prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
50.7
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
230.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
192.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
171.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
171.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
156.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
139.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
130.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
130.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
125.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
125.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
125.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
124.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
124.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
123.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
122.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
115.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
114.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
111.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
110.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
105.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
104.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
104.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
103.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
99.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
97.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
97.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
96.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
95.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
95.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
94.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
93.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
93.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
93.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
92.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
90.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
90.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
89.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
88.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
88.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
87.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
85.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
84.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
83.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
81.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
80.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
80.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
80.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
79.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
79.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
78.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
77.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
75.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
74.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
72.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
70.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
68.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
67.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
66.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
65.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
65.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
65.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
65.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
65.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
64.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
63.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
62.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
61.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
61.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
61.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
60.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
60.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
60.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
59.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
57.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
56.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
56.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
55.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
54.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
54.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
54.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
53.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
53.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
53.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
52.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
52.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
52.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
52.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
50.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
50.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
50.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
49.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
49.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
49.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
48.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
48.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
48.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
47.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
47.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
47.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
46.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
46.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
46.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
45.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
45.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
45.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
45.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
44.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
44.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
43.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
43.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
43.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
43.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
42.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
41.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
41.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
41.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
41.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
39.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
39.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
38.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
38.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
37.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
36.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
36.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
36.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
35.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
35.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
35.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
33.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
33.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
33.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
33.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
32.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
31.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
31.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
31.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
28.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
28.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
27.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
27.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
26.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
25.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
24.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
22.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
21.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
20.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
20.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
12.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
2.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
714
Normal
1.1
648
Normal
1.0
358
Normal
0.9
938
Normal
0.9
1027
Tumor
0.9
435
Tumor
0.9
912
Normal
0.9
744
Normal
0.9
862
Normal
0.9
111
Normal
0.9
218
Normal
0.8
222
Normal
0.8
615
Tumor
0.8
342
Normal
0.8
723
Tumor
0.8
314
Normal
0.8
616
Normal
0.8
664
Normal
0.8
746
Normal
0.8
392
Normal
0.8
186
Normal
0.8
456
Normal
0.8
818
Normal
0.8
824
Normal
0.8
742
Normal
0.7
146
Normal
0.7
698
Normal
0.7
412
Normal
0.7
414
Normal
0.7
866
Normal
0.7
278
Normal
0.7
136
Normal
0.7
436
Normal
0.7
858
Normal
0.7
572
Normal
0.7
482
Normal
0.7
484
Normal
0.6
432
Normal
0.6
128
Normal
0.6
422
Normal
0.6
258
Normal
0.6
666
Normal
0.6
162
Normal
0.6
878
Normal
0.6
468
Normal
0.6
1026
Normal
0.6
232
Normal
0.6
464
Normal
0.6
424
Normal
0.6
196
Normal
0.6
364
Normal
0.6
728
Normal
0.6
926
Normal
0.6
636
Normal
0.6
1044
Normal
0.6
386
Normal
0.6
298
Normal
0.5
564
Normal
0.5
462
Normal
0.5
882
Normal
0.5
142
Normal
0.5
132
Normal
0.5
738
Normal
0.5
488
Normal
0.5
214
Normal
0.5
114
Normal
0.5
148
Normal
0.5
452
Normal
0.5
816
Normal
0.5
716
Normal
0.5
466
Normal
0.5
332
Normal
0.5
884
Normal
0.5
138
Normal
0.5
366
Normal
0.5
172
Normal
0.5
914
Normal
0.5
1042
Normal
0.5
448
Normal
0.4
465
Tumor
0.4
686
Normal
0.4
558
Normal
0.4
745
Tumor
0.4
356
Normal
0.4
756
Normal
0.4
1022
Normal
0.4
446
Normal
0.4
518
Normal
0.4
384
Normal
0.4
911
Tumor
0.4
416
Normal
0.4
344
Normal
0.4
982
Normal
0.4
778
Normal
0.4
534
Normal
0.4
354
Normal
0.4
1046
Normal
0.4
228
Normal
0.4
924
Normal
0.4
376
Normal
0.4
423
Tumor
0.4
428
Normal
0.4
958
Normal
0.4
568
Normal
0.4
922
Normal
0.4
328
Normal
0.4
426
Normal
0.3
147
Tumor
0.3
944
Normal
0.3
526
Normal
0.3
968
Normal
0.3
954
Normal
0.3
1014
Normal
0.3
124
Normal
0.3
642
Normal
0.3
494
Normal
0.3
786
Normal
0.3
874
Normal
0.3
722
Normal
0.3
362
Normal
0.3
396
Normal
0.3
964
Normal
0.3
472
Normal
0.3
546
Normal
0.3
286
Normal
0.3
528
Normal
0.3
1032
Normal
0.3
628
Normal
0.3
513
Tumor
0.2
394
Normal
0.2
852
Normal
0.2
627
Tumor
0.2
984
Normal
0.2
618
Normal
0.2
262
Normal
0.2
516
Normal
0.2
411
Tumor
0.2
272
Normal
0.2
662
Normal
0.2
312
Normal
0.2
1045
Tumor
0.2
434
Normal
0.2
952
Normal
0.2
257
Tumor
0.2
915
Tumor
0.2
672
Normal
0.2
388
Normal
0.1
978
Normal
0.1
474
Normal
0.1
188
Normal
0.1
224
Normal
0.1
554
Normal
0.1
918
Normal
0.1
955
Tumor
0.1
126
Normal
0.1
1028
Normal
0.1
212
Normal
0.0
268
Normal
0.0
113
Tumor
0.0
864
Normal
0.0
1043
Tumor
0.0
574
Normal
0.0
514
Normal
0.0
1016
Normal
0.0
368
Normal
0.0
868
Normal
0.0
956
Normal
0.0
127
Tumor
0.0
352
Normal
0.0
217
Tumor
-0.1
851
Tumor
-0.1
916
Normal
-0.1
727
Tumor
-0.1
515
Tumor
-0.1
444
Normal
-0.1
415
Tumor
-0.1
327
Tumor
-0.1
777
Tumor
-0.1
696
Normal
-0.1
478
Normal
-0.1
538
Normal
-0.2
524
Normal
-0.2
141
Tumor
-0.2
451
Tumor
-0.2
966
Normal
-0.2
685
Tumor
-0.2
571
Tumor
-0.3
976
Normal
-0.3
365
Tumor
-0.3
313
Tumor
-0.3
191
Tumor
-0.3
498
Normal
-0.3
663
Tumor
-0.3
937
Tumor
-0.3
431
Tumor
-0.3
925
Tumor
-0.3
123
Tumor
-0.4
284
Normal
-0.4
192
Normal
-0.4
353
Tumor
-0.4
741
Tumor
-0.4
195
Tumor
-0.4
481
Tumor
-0.4
873
Tumor
-0.4
357
Tumor
-0.4
536
Normal
-0.4
112
Tumor
-0.5
145
Tumor
-0.5
477
Tumor
-0.5
231
Tumor
-0.5
137
Tumor
-0.5
981
Tumor
-0.5
433
Tumor
-0.5
563
Tumor
-0.5
493
Tumor
-0.5
341
Tumor
-0.5
363
Tumor
-0.5
393
Tumor
-0.5
461
Tumor
-0.5
383
Tumor
-0.5
161
Tumor
-0.6
635
Tumor
-0.6
421
Tumor
-0.6
467
Tumor
-0.6
1041
Tumor
-0.6
492
Normal
-0.6
427
Tumor
-0.6
857
Tumor
-0.6
814
Normal
-0.6
785
Tumor
-0.7
665
Tumor
-0.7
823
Tumor
-0.7
755
Tumor
-0.7
721
Tumor
-0.7
361
Tumor
-0.7
861
Tumor
-0.7
695
Tumor
-0.7
977
Tumor
-0.8
737
Tumor
-0.8
713
Tumor
-0.8
213
Tumor
-0.8
131
Tumor
-0.8
267
Tumor
-0.8
277
Tumor
-0.8
227
Tumor
-0.8
921
Tumor
-0.8
185
Tumor
-0.8
463
Tumor
-0.8
187
Tumor
-0.8
865
Tumor
-0.8
1013
Tumor
-0.8
647
Tumor
-0.8
447
Tumor
-0.9
391
Tumor
-0.9
557
Tumor
-0.9
517
Tumor
-0.9
913
Tumor
-0.9
425
Tumor
-0.9
533
Tumor
-0.9
715
Tumor
-1.0
445
Tumor
-1.0
867
Tumor
-1.0
413
Tumor
-1.0
617
Tumor
-1.0
953
Tumor
-1.0
1015
Tumor
-1.0
483
Tumor
-1.1
813
Tumor
-1.1
951
Tumor
-1.1
297
Tumor
-1.1
221
Tumor
-1.2
863
Tumor
-1.2
135
Tumor
-1.2
943
Tumor
-1.2
881
Tumor
-1.3
917
Tumor
-1.3
1025
Tumor
-1.3
815
Tumor
-1.3
883
Tumor
-1.3
523
Tumor
-1.3
261
Tumor
-1.3
963
Tumor
-1.3
171
Tumor
-1.3
957
Tumor
-1.4
455
Tumor
-1.4
527
Tumor
-1.4
1021
Tumor
-1.4
877
Tumor
-1.4
331
Tumor
-1.4
125
Tumor
-1.4
487
Tumor
-1.4
641
Tumor
-1.4
923
Tumor
-1.4
567
Tumor
-1.4
443
Tumor
-1.4
743
Tumor
-1.5
211
Tumor
-1.5
1031
Tumor
-1.5
491
Tumor
-1.5
385
Tumor
-1.5
271
Tumor
-1.5
355
Tumor
-1.6
553
Tumor
-1.6
375
Tumor
-1.6
697
Tumor
-1.6
497
Tumor
-1.6
537
Tumor
-1.6
311
Tumor
-1.6
975
Tumor
-1.7
724
Normal
-1.7
471
Tumor
-1.7
223
Tumor
-1.7
343
Tumor
-1.7
367
Tumor
-1.7
473
Tumor
-1.8
671
Tumor
-1.8
387
Tumor
-1.8
983
Tumor
-1.8
525
Tumor
-1.9
817
Tumor
-1.9
395
Tumor
-1.9
351
Tumor
-1.9
573
Tumor
-2.0
965
Tumor
-2.0
545
Tumor
-2.0
535
Tumor
-2.0
967
Tumor
-2.2
283
Tumor
-2.3
661
Tumor
-2.3
285
Tumor
-2.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.