We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KDM3B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
29.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
26.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
19.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
19.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
16.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
13.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
12.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
12.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
12.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
11.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
10.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
9.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
9.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
7.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
KDM3B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.8
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
23.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
17.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
14.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
13.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
12.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
12.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
8.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
8.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
7.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
7.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
7.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
7.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
7.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.2
385
Tumor
1.2
865
Tumor
1.2
951
Tumor
1.1
473
Tumor
1.0
743
Tumor
1.0
161
Tumor
0.9
877
Tumor
0.9
411
Tumor
0.9
497
Tumor
0.9
641
Tumor
0.8
131
Tumor
0.8
957
Tumor
0.8
285
Tumor
0.8
1013
Tumor
0.8
817
Tumor
0.7
355
Tumor
0.7
967
Tumor
0.7
983
Tumor
0.7
921
Tumor
0.7
123
Tumor
0.6
517
Tumor
0.6
387
Tumor
0.6
535
Tumor
0.6
1021
Tumor
0.6
211
Tumor
0.6
331
Tumor
0.6
1031
Tumor
0.6
313
Tumor
0.6
471
Tumor
0.6
413
Tumor
0.5
277
Tumor
0.5
425
Tumor
0.5
351
Tumor
0.5
467
Tumor
0.5
977
Tumor
0.5
567
Tumor
0.5
363
Tumor
0.5
147
Tumor
0.5
557
Tumor
0.5
447
Tumor
0.5
975
Tumor
0.5
523
Tumor
0.5
227
Tumor
0.5
375
Tumor
0.5
915
Tumor
0.5
737
Tumor
0.5
661
Tumor
0.5
427
Tumor
0.5
883
Tumor
0.5
715
Tumor
0.5
881
Tumor
0.4
553
Tumor
0.4
923
Tumor
0.4
665
Tumor
0.4
851
Tumor
0.4
533
Tumor
0.4
1043
Tumor
0.4
487
Tumor
0.4
937
Tumor
0.4
297
Tumor
0.4
663
Tumor
0.4
695
Tumor
0.4
537
Tumor
0.3
221
Tumor
0.3
135
Tumor
0.3
813
Tumor
0.3
463
Tumor
0.3
1025
Tumor
0.3
491
Tumor
0.3
823
Tumor
0.3
963
Tumor
0.3
113
Tumor
0.3
953
Tumor
0.3
391
Tumor
0.3
925
Tumor
0.3
617
Tumor
0.3
571
Tumor
0.3
493
Tumor
0.3
861
Tumor
0.3
217
Tumor
0.3
745
Tumor
0.2
724
Normal
0.2
191
Tumor
0.2
671
Tumor
0.2
383
Tumor
0.2
814
Normal
0.2
525
Tumor
0.2
477
Tumor
0.2
545
Tumor
0.2
367
Tumor
0.2
755
Tumor
0.2
257
Tumor
0.2
563
Tumor
0.2
873
Tumor
0.2
213
Tumor
0.2
261
Tumor
0.2
223
Tumor
0.1
192
Normal
0.1
195
Tumor
0.1
431
Tumor
0.1
341
Tumor
0.1
395
Tumor
0.1
451
Tumor
0.1
635
Tumor
0.1
917
Tumor
0.1
685
Tumor
0.1
697
Tumor
0.1
353
Tumor
0.1
955
Tumor
0.1
815
Tumor
0.1
267
Tumor
0.1
127
Tumor
0.1
311
Tumor
0.1
171
Tumor
0.1
271
Tumor
0.1
1041
Tumor
0.1
393
Tumor
0.1
283
Tumor
0.1
231
Tumor
0.1
536
Normal
0.1
727
Tumor
0.1
483
Tumor
0.0
713
Tumor
0.0
112
Tumor
0.0
527
Tumor
0.0
433
Tumor
0.0
455
Tumor
0.0
435
Tumor
0.0
538
Normal
0.0
498
Normal
0.0
415
Tumor
0.0
913
Tumor
0.0
943
Tumor
0.0
744
Normal
0.0
478
Normal
0.0
145
Tumor
0.0
141
Tumor
0.0
461
Tumor
0.0
222
Normal
0.0
647
Tumor
0.0
554
Normal
0.0
492
Normal
0.0
361
Tumor
0.0
185
Tumor
0.0
857
Tumor
-0.1
1027
Tumor
-0.1
916
Normal
-0.1
384
Normal
-0.1
958
Normal
-0.1
327
Tumor
-0.1
524
Normal
-0.1
721
Tumor
-0.1
546
Normal
-0.1
918
Normal
-0.1
218
Normal
-0.1
978
Normal
-0.1
126
Normal
-0.1
938
Normal
-0.1
966
Normal
-0.1
956
Normal
-0.1
924
Normal
-0.1
365
Tumor
-0.1
534
Normal
-0.1
884
Normal
-0.1
954
Normal
-0.1
728
Normal
-0.1
982
Normal
-0.1
444
Normal
-0.1
343
Tumor
-0.2
952
Normal
-0.2
484
Normal
-0.2
976
Normal
-0.2
224
Normal
-0.2
777
Tumor
-0.2
434
Normal
-0.2
196
Normal
-0.2
968
Normal
-0.2
984
Normal
-0.2
858
Normal
-0.2
228
Normal
-0.2
494
Normal
-0.2
312
Normal
-0.2
125
Tumor
-0.2
944
Normal
-0.2
714
Normal
-0.2
686
Normal
-0.2
284
Normal
-0.2
785
Tumor
-0.2
852
Normal
-0.2
146
Normal
-0.2
421
Tumor
-0.2
716
Normal
-0.2
1014
Normal
-0.2
214
Normal
-0.2
746
Normal
-0.2
1016
Normal
-0.2
416
Normal
-0.2
286
Normal
-0.2
696
Normal
-0.2
878
Normal
-0.2
472
Normal
-0.2
786
Normal
-0.2
423
Tumor
-0.2
922
Normal
-0.2
816
Normal
-0.2
672
Normal
-0.2
1028
Normal
-0.2
364
Normal
-0.2
468
Normal
-0.2
1022
Normal
-0.2
474
Normal
-0.2
366
Normal
-0.2
124
Normal
-0.2
368
Normal
-0.2
137
Tumor
-0.2
488
Normal
-0.2
867
Tumor
-0.2
114
Normal
-0.2
465
Tumor
-0.2
863
Tumor
-0.2
443
Tumor
-0.2
386
Normal
-0.3
1044
Normal
-0.3
362
Normal
-0.3
964
Normal
-0.3
628
Normal
-0.3
882
Normal
-0.3
428
Normal
-0.3
1026
Normal
-0.3
526
Normal
-0.3
818
Normal
-0.3
558
Normal
-0.3
262
Normal
-0.3
1042
Normal
-0.3
866
Normal
-0.3
528
Normal
-0.3
741
Tumor
-0.3
862
Normal
-0.3
662
Normal
-0.3
278
Normal
-0.3
742
Normal
-0.3
357
Tumor
-0.3
376
Normal
-0.3
564
Normal
-0.3
448
Normal
-0.3
874
Normal
-0.3
188
Normal
-0.3
926
Normal
-0.3
627
Tumor
-0.3
722
Normal
-0.3
738
Normal
-0.3
516
Normal
-0.3
445
Tumor
-0.3
1045
Tumor
-0.3
864
Normal
-0.3
515
Tumor
-0.3
212
Normal
-0.3
914
Normal
-0.3
138
Normal
-0.3
142
Normal
-0.3
268
Normal
-0.3
481
Tumor
-0.3
412
Normal
-0.3
466
Normal
-0.3
572
Normal
-0.3
648
Normal
-0.3
778
Normal
-0.3
868
Normal
-0.3
911
Tumor
-0.3
128
Normal
-0.3
396
Normal
-0.3
574
Normal
-0.3
518
Normal
-0.3
352
Normal
-0.3
824
Normal
-0.3
328
Normal
-0.3
912
Normal
-0.3
756
Normal
-0.3
344
Normal
-0.3
456
Normal
-0.3
414
Normal
-0.3
513
Tumor
-0.3
424
Normal
-0.3
422
Normal
-0.3
464
Normal
-0.3
636
Normal
-0.4
392
Normal
-0.4
616
Normal
-0.4
664
Normal
-0.4
232
Normal
-0.4
568
Normal
-0.4
314
Normal
-0.4
666
Normal
-0.4
723
Tumor
-0.4
1015
Tumor
-0.4
332
Normal
-0.4
514
Normal
-0.4
342
Normal
-0.4
354
Normal
-0.4
356
Normal
-0.4
358
Normal
-0.4
426
Normal
-0.4
1032
Normal
-0.4
272
Normal
-0.4
446
Normal
-0.4
298
Normal
-0.4
111
Normal
-0.4
452
Normal
-0.4
698
Normal
-0.4
132
Normal
-0.4
388
Normal
-0.4
1046
Normal
-0.4
642
Normal
-0.4
148
Normal
-0.4
618
Normal
-0.4
187
Tumor
-0.5
615
Tumor
-0.5
258
Normal
-0.5
136
Normal
-0.5
394
Normal
-0.5
436
Normal
-0.5
981
Tumor
-0.5
432
Normal
-0.5
172
Normal
-0.5
186
Normal
-0.5
482
Normal
-0.6
162
Normal
-0.6
462
Normal
-0.6
573
Tumor
-0.7
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
