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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAIP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
54.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
136.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
126.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
109.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
108.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
103.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
103.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
102.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
99.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
96.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
96.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
96.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
95.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
94.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
93.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
90.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
90.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
90.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
90.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
90.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
90.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
89.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
89.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
89.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
87.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
87.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
86.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
86.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
85.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
84.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
83.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
82.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
81.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
80.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
80.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
79.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
78.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
78.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
77.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
77.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
76.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
76.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
75.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
75.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
75.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
75.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
74.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
74.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
74.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
74.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
73.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
73.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
73.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
72.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
72.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
71.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
71.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
71.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
70.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
70.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
70.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
69.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
69.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
69.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
69.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
68.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
68.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
68.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
67.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
67.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
67.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
67.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
67.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
67.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
66.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
65.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
65.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
65.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
65.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
65.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
65.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
64.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
64.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
64.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
64.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
64.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
64.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
64.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
64.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
64.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
63.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
63.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
63.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
63.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
62.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
62.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
62.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
62.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
62.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
62.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
61.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
61.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
61.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
61.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
61.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
61.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
61.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
61.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
61.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
61.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
61.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
60.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
60.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
60.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
60.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
60.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
60.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
60.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
60.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
59.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
59.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
59.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
59.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
59.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
59.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
59.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
59.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
59.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
58.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
58.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
58.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
58.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
58.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
58.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
58.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
58.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
58.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
58.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
58.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
57.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
57.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
57.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
57.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
56.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
56.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
56.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
56.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
56.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
56.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
56.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
56.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
56.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
56.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
55.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
55.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
55.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
55.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
54.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
54.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
54.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
54.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
54.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
54.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
54.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
53.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
53.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
53.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
53.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
53.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
53.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
53.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
53.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
52.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
52.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
52.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
51.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
51.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
51.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
51.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
51.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
50.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
50.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
50.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
50.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
50.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
50.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
50.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
50.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
49.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
49.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
49.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
49.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
49.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
49.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
49.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
48.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
48.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
48.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
48.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
48.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
48.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
48.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
48.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
48.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
47.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
47.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
47.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
47.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
47.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
47.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
47.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
47.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
47.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
47.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
47.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
46.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
46.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
46.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
46.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
45.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
45.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
45.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
45.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
45.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
45.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
44.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
44.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
44.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
44.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
44.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
44.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
44.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
44.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
44.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
43.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
43.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
43.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
43.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
43.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
43.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
43.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
42.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
42.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
42.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
42.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
42.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
42.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
42.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
42.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
41.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
41.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
41.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
41.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
41.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
41.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
41.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
40.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
40.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
40.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
40.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
39.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
39.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
39.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
38.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
38.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
38.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
38.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
38.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
38.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
38.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
38.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
38.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
37.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
37.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
37.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
37.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
36.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
36.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
35.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
35.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
34.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
34.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
33.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
33.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
33.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
33.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
32.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
31.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
30.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
30.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
30.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
29.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
29.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
28.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
27.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
26.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
25.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
25.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
24.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
24.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
23.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
23.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
20.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
20.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PAIP2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
61.7
Number of samples
231
Samples
Sample
Description
TPM
DO45163
0 years, male, NA, stage:2, alive, 960 days
166.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
144.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
140.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
114.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
110.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
108.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
108.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
108.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
106.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
104.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
104.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
104.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
102.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
102.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
100.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
98.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
95.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
95.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
95.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
94.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
94.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
92.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
90.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
89.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
85.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
85.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
84.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
84.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
84.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
83.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
83.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
82.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
82.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
82.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
81.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
80.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
80.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
80.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
80.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
79.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
79.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
78.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
78.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
78.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
78.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
77.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
77.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
77.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
77.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
77.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
76.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
75.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
75.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
75.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
74.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
73.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
72.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
72.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
72.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
72.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
72.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
72.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
72.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
71.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
71.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
71.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
70.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
70.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
70.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
70.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
69.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
69.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
69.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
69.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
69.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
68.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
68.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
68.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
68.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
68.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
68.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
68.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
68.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
67.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
67.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
67.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
67.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
67.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
66.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
66.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
66.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
66.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
66.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
65.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
65.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
64.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
64.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
64.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
64.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
63.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
63.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
62.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
62.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
62.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
62.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
62.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
62.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
62.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
62.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
62.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
62.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
62.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
61.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
60.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
60.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
60.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
60.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
59.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
59.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
59.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
59.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
59.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
59.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
57.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
57.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
57.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
56.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
55.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
55.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
55.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
55.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
55.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
54.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
54.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
54.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
54.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
54.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
54.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
54.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
54.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
53.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
53.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
53.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
53.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
52.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
52.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
52.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
52.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
52.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
51.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
51.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
51.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
51.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
50.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
50.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
50.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
49.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
49.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
48.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
48.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
48.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
48.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
47.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
47.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
47.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
47.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
47.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
46.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
46.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
46.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
46.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
45.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
45.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
45.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
44.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
44.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
43.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
43.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
43.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
43.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
43.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
42.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
42.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
41.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
40.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
40.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
40.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
39.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
39.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
38.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
38.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
38.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
37.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
37.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
37.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
36.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
34.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
34.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
34.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
34.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
33.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
33.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
33.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
32.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
32.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
27.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
23.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
14.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.8
965
Tumor
1.5
285
Tumor
1.2
211
Tumor
1.2
267
Tumor
1.1
391
Tumor
1.1
387
Tumor
1.0
537
Tumor
1.0
257
Tumor
1.0
533
Tumor
0.9
724
Normal
0.9
557
Tumor
0.9
617
Tumor
0.9
697
Tumor
0.9
535
Tumor
0.8
865
Tumor
0.7
715
Tumor
0.7
745
Tumor
0.7
737
Tumor
0.7
231
Tumor
0.7
951
Tumor
0.7
743
Tumor
0.7
277
Tumor
0.7
227
Tumor
0.7
497
Tumor
0.6
983
Tumor
0.6
161
Tumor
0.6
283
Tumor
0.6
1025
Tumor
0.6
147
Tumor
0.6
473
Tumor
0.6
123
Tumor
0.6
463
Tumor
0.6
137
Tumor
0.6
483
Tumor
0.6
467
Tumor
0.6
421
Tumor
0.6
471
Tumor
0.6
727
Tumor
0.6
517
Tumor
0.6
443
Tumor
0.5
713
Tumor
0.5
937
Tumor
0.5
571
Tumor
0.5
367
Tumor
0.5
125
Tumor
0.5
411
Tumor
0.5
113
Tumor
0.5
1043
Tumor
0.5
355
Tumor
0.5
223
Tumor
0.5
527
Tumor
0.4
395
Tumor
0.4
641
Tumor
0.4
861
Tumor
0.4
187
Tumor
0.4
363
Tumor
0.4
427
Tumor
0.4
925
Tumor
0.4
112
Tumor
0.4
213
Tumor
0.4
877
Tumor
0.4
851
Tumor
0.4
135
Tumor
0.4
1031
Tumor
0.4
695
Tumor
0.4
413
Tumor
0.3
685
Tumor
0.3
375
Tumor
0.3
261
Tumor
0.3
431
Tumor
0.3
1021
Tumor
0.3
967
Tumor
0.3
721
Tumor
0.3
341
Tumor
0.3
284
Normal
0.3
953
Tumor
0.2
536
Normal
0.2
883
Tumor
0.2
433
Tumor
0.2
963
Tumor
0.2
696
Normal
0.2
1013
Tumor
0.2
477
Tumor
0.2
493
Tumor
0.2
435
Tumor
0.2
957
Tumor
0.2
663
Tumor
0.2
195
Tumor
0.2
425
Tumor
0.2
911
Tumor
0.2
661
Tumor
0.2
554
Normal
0.2
327
Tumor
0.2
915
Tumor
0.2
567
Tumor
0.2
786
Normal
0.2
171
Tumor
0.2
814
Normal
0.2
445
Tumor
0.2
1015
Tumor
0.2
823
Tumor
0.2
185
Tumor
0.1
484
Normal
0.1
813
Tumor
0.1
926
Normal
0.1
756
Normal
0.1
866
Normal
0.1
451
Tumor
0.1
228
Normal
0.1
714
Normal
0.1
873
Tumor
0.1
481
Tumor
0.1
534
Normal
0.1
665
Tumor
0.1
385
Tumor
0.1
913
Tumor
0.1
353
Tumor
0.1
191
Tumor
0.1
916
Normal
0.1
977
Tumor
0.1
728
Normal
0.1
862
Normal
0.1
922
Normal
0.1
145
Tumor
0.1
525
Tumor
0.1
271
Tumor
0.1
126
Normal
0.1
563
Tumor
0.1
955
Tumor
0.1
462
Normal
0.0
461
Tumor
0.0
515
Tumor
0.0
136
Normal
0.0
912
Normal
0.0
393
Tumor
0.0
545
Tumor
0.0
923
Tumor
0.0
671
Tumor
0.0
498
Normal
0.0
864
Normal
0.0
716
Normal
0.0
628
Normal
0.0
722
Normal
0.0
627
Tumor
0.0
114
Normal
0.0
1044
Normal
0.0
423
Tumor
0.0
944
Normal
0.0
746
Normal
0.0
356
Normal
0.0
396
Normal
0.0
918
Normal
0.0
364
Normal
0.0
1026
Normal
0.0
472
Normal
0.0
514
Normal
0.0
415
Tumor
0.0
141
Tumor
0.0
686
Normal
0.0
921
Tumor
0.0
217
Tumor
0.0
964
Normal
0.0
1027
Tumor
0.0
755
Tumor
0.0
1032
Normal
0.0
124
Normal
0.0
917
Tumor
0.0
127
Tumor
0.0
492
Normal
0.0
474
Normal
0.0
142
Normal
0.0
494
Normal
0.0
952
Normal
0.0
186
Normal
0.0
1016
Normal
-0.1
262
Normal
-0.1
618
Normal
-0.1
331
Tumor
-0.1
1028
Normal
-0.1
297
Tumor
-0.1
132
Normal
-0.1
482
Normal
-0.1
138
Normal
-0.1
981
Tumor
-0.1
924
Normal
-0.1
881
Tumor
-0.1
1042
Normal
-0.1
914
Normal
-0.1
884
Normal
-0.1
212
Normal
-0.1
416
Normal
-0.1
616
Normal
-0.1
218
Normal
-0.1
488
Normal
-0.1
426
Normal
-0.1
232
Normal
-0.1
558
Normal
-0.1
778
Normal
-0.1
868
Normal
-0.1
615
Tumor
-0.1
131
Tumor
-0.1
148
Normal
-0.1
526
Normal
-0.1
455
Tumor
-0.1
867
Tumor
-0.1
478
Normal
-0.1
568
Normal
-0.1
368
Normal
-0.1
938
Normal
-0.1
214
Normal
-0.1
188
Normal
-0.2
128
Normal
-0.2
196
Normal
-0.2
815
Tumor
-0.2
286
Normal
-0.2
224
Normal
-0.2
975
Tumor
-0.2
662
Normal
-0.2
298
Normal
-0.2
817
Tumor
-0.2
468
Normal
-0.2
162
Normal
-0.2
956
Normal
-0.2
968
Normal
-0.2
388
Normal
-0.2
1046
Normal
-0.2
524
Normal
-0.2
966
Normal
-0.2
642
Normal
-0.2
553
Tumor
-0.2
111
Normal
-0.2
954
Normal
-0.2
984
Normal
-0.2
672
Normal
-0.2
444
Normal
-0.2
313
Tumor
-0.2
258
Normal
-0.2
858
Normal
-0.2
518
Normal
-0.2
882
Normal
-0.2
222
Normal
-0.2
392
Normal
-0.2
978
Normal
-0.2
311
Tumor
-0.2
172
Normal
-0.2
958
Normal
-0.2
1014
Normal
-0.2
386
Normal
-0.2
874
Normal
-0.2
328
Normal
-0.2
278
Normal
-0.2
546
Normal
-0.2
221
Tumor
-0.2
738
Normal
-0.2
666
Normal
-0.2
272
Normal
-0.2
523
Tumor
-0.3
466
Normal
-0.3
414
Normal
-0.3
268
Normal
-0.3
465
Tumor
-0.3
361
Tumor
-0.3
723
Tumor
-0.3
383
Tumor
-0.3
742
Normal
-0.3
564
Normal
-0.3
343
Tumor
-0.3
365
Tumor
-0.3
538
Normal
-0.3
818
Normal
-0.3
448
Normal
-0.3
1022
Normal
-0.3
434
Normal
-0.3
852
Normal
-0.3
314
Normal
-0.3
516
Normal
-0.3
878
Normal
-0.3
394
Normal
-0.3
528
Normal
-0.3
664
Normal
-0.3
976
Normal
-0.3
573
Tumor
-0.3
332
Normal
-0.3
863
Tumor
-0.3
777
Tumor
-0.3
446
Normal
-0.3
572
Normal
-0.3
491
Tumor
-0.3
647
Tumor
-0.3
982
Normal
-0.3
357
Tumor
-0.4
452
Normal
-0.4
447
Tumor
-0.4
857
Tumor
-0.4
574
Normal
-0.4
648
Normal
-0.4
146
Normal
-0.4
636
Normal
-0.4
943
Tumor
-0.4
824
Normal
-0.4
312
Normal
-0.4
412
Normal
-0.4
192
Normal
-0.4
362
Normal
-0.4
422
Normal
-0.4
428
Normal
-0.4
424
Normal
-0.4
698
Normal
-0.4
741
Tumor
-0.4
744
Normal
-0.5
384
Normal
-0.5
351
Tumor
-0.5
464
Normal
-0.5
513
Tumor
-0.5
376
Normal
-0.5
432
Normal
-0.5
456
Normal
-0.5
344
Normal
-0.5
816
Normal
-0.5
354
Normal
-0.6
1045
Tumor
-0.6
785
Tumor
-0.6
366
Normal
-0.6
436
Normal
-0.6
487
Tumor
-0.7
342
Normal
-0.7
358
Normal
-0.8
352
Normal
-0.8
635
Tumor
-1.1
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
