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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ETF1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
64.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
58.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
53.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
48.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
47.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
47.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
46.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
46.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
44.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
42.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
39.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
38.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
37.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
35.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
34.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
34.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
34.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
34.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
33.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
33.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
33.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
33.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
32.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
32.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
32.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
32.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
32.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
31.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
31.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
31.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
31.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
30.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
30.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
30.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
29.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
29.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
29.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
28.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
28.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
28.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
28.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
28.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
27.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
27.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
27.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
27.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
27.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
27.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
26.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
26.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
26.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
25.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
25.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
25.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
25.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
24.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
24.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
24.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
23.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
23.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
23.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
23.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
23.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
22.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
22.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
22.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
22.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
22.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
21.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
21.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
21.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
21.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
21.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
20.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
20.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
20.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
20.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
20.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
20.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
20.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
20.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
19.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
19.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
19.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
19.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
19.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
18.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
18.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
18.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
18.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
18.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
17.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
17.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
17.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
16.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
15.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
15.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
14.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
14.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
14.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
13.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
13.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
12.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
10.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
10.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
8.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ETF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.1
Number of samples
231
Samples
Sample
Description
TPM
DO23545
0 years, male, NA, stage:2, dead, 570 days
58.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
55.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
54.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
51.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
51.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
51.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
48.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
47.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
45.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
45.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
44.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
43.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
42.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
41.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
41.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
38.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
38.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
37.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
37.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
37.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
36.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
34.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
33.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
33.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
32.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
32.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
32.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
32.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
32.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
31.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
31.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
31.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
30.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
29.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
29.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
29.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
29.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
28.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
28.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
28.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
28.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
28.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
28.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
28.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
27.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
27.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
27.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
26.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
26.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
26.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
26.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
26.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
25.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
25.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
25.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
25.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
24.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
24.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
23.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
23.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
23.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
22.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
21.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
21.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
21.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
21.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
21.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
21.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
21.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
20.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
20.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
20.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
20.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
19.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
19.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
19.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
19.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
19.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
18.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
18.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
16.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
12.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
1.0
724
Normal
0.7
395
Tumor
0.6
523
Tumor
0.6
527
Tumor
0.6
497
Tumor
0.5
211
Tumor
0.5
953
Tumor
0.4
387
Tumor
0.4
515
Tumor
0.4
411
Tumor
0.4
851
Tumor
0.4
865
Tumor
0.4
353
Tumor
0.4
965
Tumor
0.4
355
Tumor
0.3
817
Tumor
0.3
861
Tumor
0.3
663
Tumor
0.3
223
Tumor
0.3
455
Tumor
0.3
365
Tumor
0.3
777
Tumor
0.3
161
Tumor
0.3
135
Tumor
0.3
147
Tumor
0.3
967
Tumor
0.3
1021
Tumor
0.3
745
Tumor
0.3
327
Tumor
0.3
537
Tumor
0.3
491
Tumor
0.3
557
Tumor
0.3
513
Tumor
0.3
447
Tumor
0.3
313
Tumor
0.3
435
Tumor
0.3
627
Tumor
0.2
697
Tumor
0.2
567
Tumor
0.2
257
Tumor
0.2
571
Tumor
0.2
755
Tumor
0.2
573
Tumor
0.2
187
Tumor
0.2
141
Tumor
0.2
957
Tumor
0.2
357
Tumor
0.2
461
Tumor
0.2
473
Tumor
0.2
137
Tumor
0.2
195
Tumor
0.2
123
Tumor
0.2
951
Tumor
0.2
231
Tumor
0.2
391
Tumor
0.2
227
Tumor
0.2
535
Tumor
0.2
943
Tumor
0.2
661
Tumor
0.2
427
Tumor
0.2
285
Tumor
0.2
923
Tumor
0.2
393
Tumor
0.2
125
Tumor
0.1
983
Tumor
0.1
737
Tumor
0.1
171
Tumor
0.1
525
Tumor
0.1
375
Tumor
0.1
467
Tumor
0.1
925
Tumor
0.1
635
Tumor
0.1
331
Tumor
0.1
145
Tumor
0.1
978
Normal
0.1
261
Tumor
0.1
665
Tumor
0.1
911
Tumor
0.1
311
Tumor
0.1
981
Tumor
0.1
685
Tumor
0.1
917
Tumor
0.1
188
Normal
0.1
913
Tumor
0.1
383
Tumor
0.1
113
Tumor
0.1
713
Tumor
0.1
743
Tumor
0.0
545
Tumor
0.0
1016
Normal
0.0
728
Normal
0.0
617
Tumor
0.0
723
Tumor
0.0
297
Tumor
0.0
647
Tumor
0.0
423
Tumor
0.0
977
Tumor
0.0
471
Tumor
0.0
517
Tumor
0.0
937
Tumor
0.0
217
Tumor
0.0
212
Normal
0.0
1027
Tumor
0.0
413
Tumor
0.0
482
Normal
0.0
351
Tumor
0.0
916
Normal
0.0
474
Normal
0.0
191
Tumor
0.0
915
Tumor
0.0
385
Tumor
0.0
283
Tumor
0.0
966
Normal
0.0
867
Tumor
0.0
742
Normal
0.0
536
Normal
0.0
272
Normal
0.0
185
Tumor
0.0
715
Tumor
0.0
136
Normal
0.0
472
Normal
0.0
262
Normal
0.0
462
Normal
0.0
361
Tumor
0.0
416
Normal
0.0
284
Normal
0.0
328
Normal
0.0
738
Normal
0.0
881
Tumor
0.0
465
Tumor
0.0
1028
Normal
-0.1
914
Normal
-0.1
533
Tumor
-0.1
114
Normal
-0.1
741
Tumor
-0.1
356
Normal
-0.1
128
Normal
-0.1
518
Normal
-0.1
213
Tumor
-0.1
228
Normal
-0.1
481
Tumor
-0.1
162
Normal
-0.1
727
Tumor
-0.1
963
Tumor
-0.1
721
Tumor
-0.1
267
Tumor
-0.1
976
Normal
-0.1
268
Normal
-0.1
785
Tumor
-0.1
824
Normal
-0.1
126
Normal
-0.1
172
Normal
-0.1
464
Normal
-0.1
124
Normal
-0.1
431
Tumor
-0.1
1044
Normal
-0.1
451
Tumor
-0.1
813
Tumor
-0.1
363
Tumor
-0.1
434
Normal
-0.1
628
Normal
-0.1
394
Normal
-0.1
132
Normal
-0.1
955
Tumor
-0.1
443
Tumor
-0.1
815
Tumor
-0.1
814
Normal
-0.1
366
Normal
-0.1
258
Normal
-0.1
874
Normal
-0.1
746
Normal
-0.1
1041
Tumor
-0.1
912
Normal
-0.1
982
Normal
-0.1
648
Normal
-0.1
364
Normal
-0.1
368
Normal
-0.1
864
Normal
-0.1
286
Normal
-0.1
786
Normal
-0.1
641
Tumor
-0.1
396
Normal
-0.1
421
Tumor
-0.1
386
Normal
-0.1
852
Normal
-0.1
615
Tumor
-0.1
528
Normal
-0.1
362
Normal
-0.1
224
Normal
-0.1
127
Tumor
-0.1
968
Normal
-0.1
466
Normal
-0.1
222
Normal
-0.1
492
Normal
-0.1
445
Tumor
-0.1
883
Tumor
-0.1
695
Tumor
-0.2
148
Normal
-0.2
778
Normal
-0.2
1025
Tumor
-0.2
412
Normal
-0.2
1042
Normal
-0.2
1026
Normal
-0.2
196
Normal
-0.2
341
Tumor
-0.2
918
Normal
-0.2
662
Normal
-0.2
926
Normal
-0.2
952
Normal
-0.2
112
Tumor
-0.2
493
Tumor
-0.2
1031
Tumor
-0.2
428
Normal
-0.2
111
Normal
-0.2
314
Normal
-0.2
1014
Normal
-0.2
478
Normal
-0.2
526
Normal
-0.2
312
Normal
-0.2
868
Normal
-0.2
436
Normal
-0.2
448
Normal
-0.2
138
Normal
-0.2
722
Normal
-0.2
367
Tumor
-0.2
964
Normal
-0.2
1043
Tumor
-0.2
433
Tumor
-0.2
816
Normal
-0.2
514
Normal
-0.2
414
Normal
-0.2
1045
Tumor
-0.2
1015
Tumor
-0.2
422
Normal
-0.2
636
Normal
-0.2
218
Normal
-0.2
698
Normal
-0.2
618
Normal
-0.2
873
Tumor
-0.2
424
Normal
-0.2
498
Normal
-0.2
877
Tumor
-0.2
714
Normal
-0.2
975
Tumor
-0.2
477
Tumor
-0.2
686
Normal
-0.2
642
Normal
-0.2
563
Tumor
-0.2
392
Normal
-0.2
278
Normal
-0.2
862
Normal
-0.2
666
Normal
-0.2
388
Normal
-0.2
924
Normal
-0.2
277
Tumor
-0.2
298
Normal
-0.2
534
Normal
-0.2
488
Normal
-0.2
214
Normal
-0.2
878
Normal
-0.2
524
Normal
-0.2
616
Normal
-0.2
446
Normal
-0.2
664
Normal
-0.2
984
Normal
-0.2
823
Tumor
-0.2
956
Normal
-0.2
568
Normal
-0.2
452
Normal
-0.2
426
Normal
-0.2
444
Normal
-0.2
332
Normal
-0.2
884
Normal
-0.2
1046
Normal
-0.2
516
Normal
-0.2
922
Normal
-0.2
1022
Normal
-0.3
352
Normal
-0.3
546
Normal
-0.3
538
Normal
-0.3
938
Normal
-0.3
696
Normal
-0.3
554
Normal
-0.3
192
Normal
-0.3
866
Normal
-0.3
384
Normal
-0.3
857
Tumor
-0.3
376
Normal
-0.3
574
Normal
-0.3
756
Normal
-0.3
232
Normal
-0.3
415
Tumor
-0.3
456
Normal
-0.3
468
Normal
-0.3
142
Normal
-0.3
484
Normal
-0.3
344
Normal
-0.3
432
Normal
-0.3
1032
Normal
-0.3
186
Normal
-0.3
858
Normal
-0.3
716
Normal
-0.3
882
Normal
-0.3
558
Normal
-0.3
131
Tumor
-0.3
221
Tumor
-0.3
494
Normal
-0.3
463
Tumor
-0.3
342
Normal
-0.3
944
Normal
-0.3
358
Normal
-0.3
744
Normal
-0.3
954
Normal
-0.3
271
Tumor
-0.3
146
Normal
-0.3
487
Tumor
-0.3
863
Tumor
-0.4
564
Normal
-0.4
818
Normal
-0.4
921
Tumor
-0.4
671
Tumor
-0.4
354
Normal
-0.4
672
Normal
-0.4
572
Normal
-0.4
483
Tumor
-0.5
958
Normal
-0.5
425
Tumor
-0.5
343
Tumor
-0.5
553
Tumor
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
