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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UFM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
51.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
43.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
42.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
36.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
36.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
35.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
32.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
32.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
32.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
31.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
31.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
31.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
30.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
30.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
30.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
29.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
28.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
28.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
28.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
28.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
27.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
27.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
27.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
27.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
26.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
26.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
26.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
26.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
26.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
26.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
24.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
24.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
24.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
24.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
24.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
23.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
23.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
23.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
23.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
22.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
21.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
21.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
20.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
20.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
20.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
20.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
20.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
20.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
19.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
19.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
19.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
19.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
19.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
19.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
19.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
18.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
18.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
18.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
18.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
18.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
17.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
17.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
16.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
16.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
15.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
15.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
14.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
13.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
13.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
13.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
13.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
13.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
12.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
12.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
10.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
6.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UFM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.0
Number of samples
231
Samples
Sample
Description
TPM
DO45277
0 years, male, NA, stage:3, alive, 600 days
84.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
75.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
68.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
63.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
55.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
53.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
52.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
51.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
50.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
46.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
46.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
46.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
45.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
45.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
45.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
45.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
44.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
43.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
43.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
41.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
41.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
40.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
40.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
39.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
39.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
39.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
37.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
37.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
37.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
37.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
37.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
37.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
37.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
36.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
36.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
36.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
35.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
35.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
35.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
35.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
35.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
34.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
34.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
33.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
33.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
33.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
32.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
32.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
32.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
31.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
31.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
31.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
30.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
30.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
30.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
29.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
29.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
29.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
29.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
29.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
29.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
28.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
28.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
28.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
27.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
27.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
26.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
26.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
25.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
25.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
25.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
24.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
24.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
23.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
23.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
23.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
23.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
22.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
22.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
22.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
22.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
22.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
22.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
21.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
21.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
20.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
19.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
18.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
18.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
18.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
14.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
615
Tumor
0.5
327
Tumor
0.5
1027
Tumor
0.5
777
Tumor
0.4
723
Tumor
0.4
1026
Normal
0.4
858
Normal
0.4
514
Normal
0.4
616
Normal
0.4
1022
Normal
0.4
862
Normal
0.4
1032
Normal
0.4
356
Normal
0.4
911
Tumor
0.3
1046
Normal
0.3
698
Normal
0.3
755
Tumor
0.3
738
Normal
0.3
944
Normal
0.3
448
Normal
0.3
131
Tumor
0.3
984
Normal
0.3
1044
Normal
0.3
261
Tumor
0.3
955
Tumor
0.3
481
Tumor
0.3
938
Normal
0.3
482
Normal
0.3
364
Normal
0.3
466
Normal
0.3
435
Tumor
0.3
411
Tumor
0.3
223
Tumor
0.3
1015
Tumor
0.2
462
Normal
0.2
228
Normal
0.2
328
Normal
0.2
412
Normal
0.2
746
Normal
0.2
286
Normal
0.2
617
Tumor
0.2
714
Normal
0.2
863
Tumor
0.2
978
Normal
0.2
742
Normal
0.2
981
Tumor
0.2
1042
Normal
0.2
376
Normal
0.2
824
Normal
0.2
818
Normal
0.2
1016
Normal
0.2
515
Tumor
0.2
128
Normal
0.2
878
Normal
0.2
353
Tumor
0.2
415
Tumor
0.2
756
Normal
0.2
546
Normal
0.2
137
Tumor
0.2
926
Normal
0.2
572
Normal
0.2
416
Normal
0.2
142
Normal
0.2
1021
Tumor
0.2
864
Normal
0.2
867
Tumor
0.2
716
Normal
0.2
488
Normal
0.2
536
Normal
0.2
284
Normal
0.2
436
Normal
0.2
778
Normal
0.2
696
Normal
0.1
1014
Normal
0.1
1043
Tumor
0.1
526
Normal
0.1
721
Tumor
0.1
852
Normal
0.1
722
Normal
0.1
484
Normal
0.1
534
Normal
0.1
558
Normal
0.1
494
Normal
0.1
568
Normal
0.1
414
Normal
0.1
196
Normal
0.1
224
Normal
0.1
127
Tumor
0.1
232
Normal
0.1
866
Normal
0.1
528
Normal
0.1
728
Normal
0.1
212
Normal
0.1
816
Normal
0.1
924
Normal
0.1
873
Tumor
0.1
518
Normal
0.1
1028
Normal
0.1
554
Normal
0.1
744
Normal
0.1
982
Normal
0.1
868
Normal
0.1
915
Tumor
0.1
424
Normal
0.1
363
Tumor
0.1
352
Normal
0.1
912
Normal
0.1
966
Normal
0.1
384
Normal
0.1
954
Normal
0.1
618
Normal
0.1
1031
Tumor
0.1
628
Normal
0.1
958
Normal
0.1
686
Normal
0.1
148
Normal
0.1
741
Tumor
0.1
685
Tumor
0.1
446
Normal
0.1
422
Normal
0.1
715
Tumor
0.1
431
Tumor
0.1
564
Normal
0.1
636
Normal
0.1
815
Tumor
0.0
1041
Tumor
0.0
1013
Tumor
0.0
468
Normal
0.0
444
Normal
0.0
976
Normal
0.0
434
Normal
0.0
362
Normal
0.0
111
Normal
0.0
162
Normal
0.0
342
Normal
0.0
428
Normal
0.0
445
Tumor
0.0
884
Normal
0.0
922
Normal
0.0
426
Normal
0.0
472
Normal
0.0
952
Normal
0.0
963
Tumor
0.0
964
Normal
0.0
135
Tumor
0.0
882
Normal
0.0
786
Normal
0.0
141
Tumor
0.0
456
Normal
0.0
665
Tumor
0.0
474
Normal
0.0
968
Normal
0.0
883
Tumor
0.0
918
Normal
0.0
874
Normal
0.0
672
Normal
0.0
535
Tumor
0.0
432
Normal
0.0
222
Normal
0.0
172
Normal
0.0
516
Normal
0.0
351
Tumor
0.0
146
Normal
0.0
478
Normal
0.0
916
Normal
0.0
358
Normal
-0.1
983
Tumor
-0.1
1045
Tumor
-0.1
218
Normal
-0.1
914
Normal
-0.1
745
Tumor
-0.1
524
Normal
-0.1
956
Normal
-0.1
186
Normal
-0.1
452
Normal
-0.1
298
Normal
-0.1
483
Tumor
-0.1
648
Normal
-0.1
423
Tumor
-0.1
354
Normal
-0.1
368
Normal
-0.1
498
Normal
-0.1
724
Normal
-0.1
1025
Tumor
-0.1
136
Normal
-0.1
394
Normal
-0.1
392
Normal
-0.1
132
Normal
-0.1
113
Tumor
-0.1
662
Normal
-0.1
492
Normal
-0.1
227
Tumor
-0.1
425
Tumor
-0.1
557
Tumor
-0.1
538
Normal
-0.1
214
Normal
-0.1
257
Tumor
-0.1
642
Normal
-0.1
413
Tumor
-0.1
187
Tumor
-0.1
857
Tumor
-0.1
271
Tumor
-0.1
965
Tumor
-0.1
574
Normal
-0.1
727
Tumor
-0.2
953
Tumor
-0.2
664
Normal
-0.2
647
Tumor
-0.2
851
Tumor
-0.2
262
Normal
-0.2
666
Normal
-0.2
823
Tumor
-0.2
513
Tumor
-0.2
627
Tumor
-0.2
464
Normal
-0.2
258
Normal
-0.2
461
Tumor
-0.2
913
Tumor
-0.2
272
Normal
-0.2
114
Normal
-0.2
641
Tumor
-0.2
713
Tumor
-0.2
344
Normal
-0.2
553
Tumor
-0.2
743
Tumor
-0.2
467
Tumor
-0.2
185
Tumor
-0.2
917
Tumor
-0.2
447
Tumor
-0.2
357
Tumor
-0.2
112
Tumor
-0.2
661
Tumor
-0.2
421
Tumor
-0.2
332
Normal
-0.2
311
Tumor
-0.2
455
Tumor
-0.2
314
Normal
-0.3
126
Normal
-0.3
517
Tumor
-0.3
211
Tumor
-0.3
388
Normal
-0.3
375
Tumor
-0.3
451
Tumor
-0.3
527
Tumor
-0.3
967
Tumor
-0.3
145
Tumor
-0.3
386
Normal
-0.3
124
Normal
-0.3
695
Tumor
-0.3
427
Tumor
-0.3
465
Tumor
-0.3
396
Normal
-0.3
977
Tumor
-0.3
268
Normal
-0.3
138
Normal
-0.3
385
Tumor
-0.3
563
Tumor
-0.3
925
Tumor
-0.3
188
Normal
-0.3
663
Tumor
-0.3
383
Tumor
-0.3
861
Tumor
-0.3
312
Normal
-0.3
283
Tumor
-0.3
217
Tumor
-0.4
365
Tumor
-0.4
192
Normal
-0.4
191
Tumor
-0.4
278
Normal
-0.4
473
Tumor
-0.4
785
Tumor
-0.4
355
Tumor
-0.4
366
Normal
-0.4
943
Tumor
-0.4
433
Tumor
-0.4
443
Tumor
-0.4
341
Tumor
-0.4
361
Tumor
-0.4
297
Tumor
-0.5
487
Tumor
-0.5
937
Tumor
-0.5
865
Tumor
-0.5
881
Tumor
-0.5
493
Tumor
-0.5
573
Tumor
-0.5
567
Tumor
-0.5
367
Tumor
-0.5
537
Tumor
-0.5
814
Normal
-0.5
817
Tumor
-0.5
471
Tumor
-0.5
285
Tumor
-0.5
951
Tumor
-0.5
147
Tumor
-0.5
523
Tumor
-0.6
813
Tumor
-0.6
697
Tumor
-0.6
957
Tumor
-0.6
331
Tumor
-0.6
545
Tumor
-0.6
497
Tumor
-0.6
921
Tumor
-0.6
391
Tumor
-0.6
477
Tumor
-0.6
231
Tumor
-0.6
525
Tumor
-0.7
277
Tumor
-0.7
395
Tumor
-0.7
923
Tumor
-0.7
387
Tumor
-0.7
737
Tumor
-0.7
171
Tumor
-0.7
671
Tumor
-0.7
393
Tumor
-0.7
877
Tumor
-0.7
267
Tumor
-0.8
195
Tumor
-0.8
635
Tumor
-0.8
161
Tumor
-0.8
123
Tumor
-0.9
491
Tumor
-0.9
533
Tumor
-0.9
213
Tumor
-0.9
313
Tumor
-0.9
975
Tumor
-0.9
463
Tumor
-0.9
221
Tumor
-1.0
571
Tumor
-1.1
343
Tumor
-1.1
125
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.