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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAF12 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
65.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
42.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
34.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
31.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
30.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
29.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
28.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
28.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
26.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
25.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
25.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
24.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
24.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
22.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
19.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
18.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
18.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
18.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
18.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
17.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
16.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
15.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
15.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
15.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
15.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
14.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
14.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
14.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
14.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
12.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
11.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
10.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
8.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
8.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
7.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
6.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TAF12 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.4
Number of samples
231
Samples
Sample
Description
TPM
DO50785
0 years, male, NA, stage:4, dead, 90 days
55.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
53.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
37.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
36.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
31.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
31.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
31.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
30.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
29.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
25.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
24.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
23.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
22.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
21.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
21.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
21.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
20.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
20.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
20.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
19.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
18.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
18.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
17.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
17.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
16.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
15.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
13.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
12.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
12.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
9.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
8.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
911
Tumor
1.0
981
Tumor
0.9
487
Tumor
0.6
1041
Tumor
0.6
861
Tumor
0.5
915
Tumor
0.5
867
Tumor
0.5
131
Tumor
0.5
755
Tumor
0.5
465
Tumor
0.5
483
Tumor
0.5
463
Tumor
0.5
462
Normal
0.4
385
Tumor
0.4
925
Tumor
0.4
357
Tumor
0.4
367
Tumor
0.4
415
Tumor
0.3
864
Normal
0.3
513
Tumor
0.3
746
Normal
0.3
882
Normal
0.3
868
Normal
0.3
425
Tumor
0.3
695
Tumor
0.3
873
Tumor
0.3
351
Tumor
0.2
685
Tumor
0.2
387
Tumor
0.2
1016
Normal
0.2
455
Tumor
0.2
743
Tumor
0.2
484
Normal
0.2
491
Tumor
0.2
741
Tumor
0.2
968
Normal
0.2
862
Normal
0.2
914
Normal
0.2
271
Tumor
0.2
866
Normal
0.2
955
Tumor
0.2
535
Tumor
0.2
1028
Normal
0.2
951
Tumor
0.2
874
Normal
0.2
488
Normal
0.2
944
Normal
0.2
227
Tumor
0.2
461
Tumor
0.1
267
Tumor
0.1
1015
Tumor
0.1
785
Tumor
0.1
341
Tumor
0.1
515
Tumor
0.1
878
Normal
0.1
883
Tumor
0.1
865
Tumor
0.1
497
Tumor
0.1
523
Tumor
0.1
778
Normal
0.1
477
Tumor
0.1
436
Normal
0.1
737
Tumor
0.1
982
Normal
0.1
956
Normal
0.1
937
Tumor
0.1
472
Normal
0.1
482
Normal
0.1
816
Normal
0.1
952
Normal
0.1
545
Tumor
0.1
212
Normal
0.1
494
Normal
0.1
777
Tumor
0.0
1022
Normal
0.0
395
Tumor
0.0
954
Normal
0.0
863
Tumor
0.0
375
Tumor
0.0
361
Tumor
0.0
142
Normal
0.0
924
Normal
0.0
815
Tumor
0.0
852
Normal
0.0
474
Normal
0.0
141
Tumor
0.0
1043
Tumor
0.0
447
Tumor
0.0
527
Tumor
0.0
918
Normal
0.0
327
Tumor
0.0
391
Tumor
0.0
435
Tumor
0.0
394
Normal
0.0
858
Normal
0.0
533
Tumor
0.0
958
Normal
0.0
492
Normal
0.0
744
Normal
0.0
412
Normal
0.0
392
Normal
0.0
171
Tumor
0.0
386
Normal
0.0
786
Normal
0.0
727
Tumor
0.0
396
Normal
0.0
1045
Tumor
0.0
498
Normal
0.0
698
Normal
0.0
635
Tumor
0.0
411
Tumor
0.0
824
Normal
0.0
1014
Normal
0.0
912
Normal
0.0
286
Normal
0.0
546
Normal
0.0
617
Tumor
0.0
534
Normal
0.0
516
Normal
0.0
557
Tumor
0.0
965
Tumor
0.0
185
Tumor
0.0
745
Tumor
0.0
478
Normal
0.0
428
Normal
0.0
224
Normal
0.0
554
Normal
-0.1
383
Tumor
-0.1
481
Tumor
-0.1
365
Tumor
-0.1
567
Tumor
-0.1
228
Normal
-0.1
715
Tumor
-0.1
448
Normal
-0.1
518
Normal
-0.1
384
Normal
-0.1
966
Normal
-0.1
413
Tumor
-0.1
1032
Normal
-0.1
354
Normal
-0.1
137
Tumor
-0.1
493
Tumor
-0.1
268
Normal
-0.1
517
Tumor
-0.1
967
Tumor
-0.1
916
Normal
-0.1
424
Normal
-0.1
571
Tumor
-0.1
393
Tumor
-0.1
938
Normal
-0.1
145
Tumor
-0.1
136
Normal
-0.1
528
Normal
-0.1
467
Tumor
-0.1
473
Tumor
-0.1
884
Normal
-0.1
814
Normal
-0.1
818
Normal
-0.1
416
Normal
-0.1
187
Tumor
-0.1
232
Normal
-0.1
957
Tumor
-0.1
388
Normal
-0.1
537
Tumor
-0.1
913
Tumor
-0.1
536
Normal
-0.1
756
Normal
-0.1
975
Tumor
-0.1
538
Normal
-0.1
976
Normal
-0.1
343
Tumor
-0.1
135
Tumor
-0.1
724
Normal
-0.2
984
Normal
-0.2
1046
Normal
-0.2
376
Normal
-0.2
261
Tumor
-0.2
964
Normal
-0.2
738
Normal
-0.2
742
Normal
-0.2
257
Tumor
-0.2
328
Normal
-0.2
146
Normal
-0.2
161
Tumor
-0.2
1042
Normal
-0.2
696
Normal
-0.2
434
Normal
-0.2
857
Tumor
-0.2
148
Normal
-0.2
364
Normal
-0.2
813
Tumor
-0.2
284
Normal
-0.2
926
Normal
-0.2
943
Tumor
-0.2
368
Normal
-0.2
231
Tumor
-0.2
445
Tumor
-0.2
697
Tumor
-0.2
414
Normal
-0.2
431
Tumor
-0.2
728
Normal
-0.2
223
Tumor
-0.2
258
Normal
-0.2
451
Tumor
-0.2
553
Tumor
-0.2
426
Normal
-0.2
262
Normal
-0.2
423
Tumor
-0.2
138
Normal
-0.2
353
Tumor
-0.2
823
Tumor
-0.2
356
Normal
-0.3
1025
Tumor
-0.3
1026
Normal
-0.3
147
Tumor
-0.3
427
Tumor
-0.3
1044
Normal
-0.3
272
Normal
-0.3
714
Normal
-0.3
524
Normal
-0.3
362
Normal
-0.3
526
Normal
-0.3
132
Normal
-0.3
211
Tumor
-0.3
162
Normal
-0.3
421
Tumor
-0.3
525
Tumor
-0.3
953
Tumor
-0.3
446
Normal
-0.3
352
Normal
-0.3
716
Normal
-0.3
713
Tumor
-0.3
466
Normal
-0.3
686
Normal
-0.3
366
Normal
-0.3
922
Normal
-0.3
723
Tumor
-0.3
1027
Tumor
-0.3
514
Normal
-0.3
456
Normal
-0.3
433
Tumor
-0.3
977
Tumor
-0.3
923
Tumor
-0.4
444
Normal
-0.4
355
Tumor
-0.4
464
Normal
-0.4
721
Tumor
-0.4
615
Tumor
-0.4
851
Tumor
-0.4
563
Tumor
-0.4
283
Tumor
-0.4
881
Tumor
-0.4
188
Normal
-0.4
186
Normal
-0.4
172
Normal
-0.4
978
Normal
-0.4
722
Normal
-0.4
817
Tumor
-0.4
647
Tumor
-0.4
642
Normal
-0.4
471
Tumor
-0.4
422
Normal
-0.4
443
Tumor
-0.5
627
Tumor
-0.5
662
Normal
-0.5
574
Normal
-0.5
344
Normal
-0.5
468
Normal
-0.5
618
Normal
-0.5
1021
Tumor
-0.5
963
Tumor
-0.5
363
Tumor
-0.5
564
Normal
-0.5
636
Normal
-0.6
358
Normal
-0.6
452
Normal
-0.6
661
Tumor
-0.6
572
Normal
-0.6
917
Tumor
-0.6
573
Tumor
-0.6
432
Normal
-0.6
616
Normal
-0.6
285
Tumor
-0.6
1013
Tumor
-0.7
663
Tumor
-0.7
558
Normal
-0.7
921
Tumor
-0.7
664
Normal
-0.7
877
Tumor
-0.7
342
Normal
-0.7
672
Normal
-0.7
568
Normal
-0.7
641
Tumor
-0.8
628
Normal
-0.8
648
Normal
-0.8
671
Tumor
-0.9
666
Normal
-0.9
983
Tumor
-0.9
665
Tumor
-1.0
1031
Tumor
-1.1
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
213
Tumor
N/A
214
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
222
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
