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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
69.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
247.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
245.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
212.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
207.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
192.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
186.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
182.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
172.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
170.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
167.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
165.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
161.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
153.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
150.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
150.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
145.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
144.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
143.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
143.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
142.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
141.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
134.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
133.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
133.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
132.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
130.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
129.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
126.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
126.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
124.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
124.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
123.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
120.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
119.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
119.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
116.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
116.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
116.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
114.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
113.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
112.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
110.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
109.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
109.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
108.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
107.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
105.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
104.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
103.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
103.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
103.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
102.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
102.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
101.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
100.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
100.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
100.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
100.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
99.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
99.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
99.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
99.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
98.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
97.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
97.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
96.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
96.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
96.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
96.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
95.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
94.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
94.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
94.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
94.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
93.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
93.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
92.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
92.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
92.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
92.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
91.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
90.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
90.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
90.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
88.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
88.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
86.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
86.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
86.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
85.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
85.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
84.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
84.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
84.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
84.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
84.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
82.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
82.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
82.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
82.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
81.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
81.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
81.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
81.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
80.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
80.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
80.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
80.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
79.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
78.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
78.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
78.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
77.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
77.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
77.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
77.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
76.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
76.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
76.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
76.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
75.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
75.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
75.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
75.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
75.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
75.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
75.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
74.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
74.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
74.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
74.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
74.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
74.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
74.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
73.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
73.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
73.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
73.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
73.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
71.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
71.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
70.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
70.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
70.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
69.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
69.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
69.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
69.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
69.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
68.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
68.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
68.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
67.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
67.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
67.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
67.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
67.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
67.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
67.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
67.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
66.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
66.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
66.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
66.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
65.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
65.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
65.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
64.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
64.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
63.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
63.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
63.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
63.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
63.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
62.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
62.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
61.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
61.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
61.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
61.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
61.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
60.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
60.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
60.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
60.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
60.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
59.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
59.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
59.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
59.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
59.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
58.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
58.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
58.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
57.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
57.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
57.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
56.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
56.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
56.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
56.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
56.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
55.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
55.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
55.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
55.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
54.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
54.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
54.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
54.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
54.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
54.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
53.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
53.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
53.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
53.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
53.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
52.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
52.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
52.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
51.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
51.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
51.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
51.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
51.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
50.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
50.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
50.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
50.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
50.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
49.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
49.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
49.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
49.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
49.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
49.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
49.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
48.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
48.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
48.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
48.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
48.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
47.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
47.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
47.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
47.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
47.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
47.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
47.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
47.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
47.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
47.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
46.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
46.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
46.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
46.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
46.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
45.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
45.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
45.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
45.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
45.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
45.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
44.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
44.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
44.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
43.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
43.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
43.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
43.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
43.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
43.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
42.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
42.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
42.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
41.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
41.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
40.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
40.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
40.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
40.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
40.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
40.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
40.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
39.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
39.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
39.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
39.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
39.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
39.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
39.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
38.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
38.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
37.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
37.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
36.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
36.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
36.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
35.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
35.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
34.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
34.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
34.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
34.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
34.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
33.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
33.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
33.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
32.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
32.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
32.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
32.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
31.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
31.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
31.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
30.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
29.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
29.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
28.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
28.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
28.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
28.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
28.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
27.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
27.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
27.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
26.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
25.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
25.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
24.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
24.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
22.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
20.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TCP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.3
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
242.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
193.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
190.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
167.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
161.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
153.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
150.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
149.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
145.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
145.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
142.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
141.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
136.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
133.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
131.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
131.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
130.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
127.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
126.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
125.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
123.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
122.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
121.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
120.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
118.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
114.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
113.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
111.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
109.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
109.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
108.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
108.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
107.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
106.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
106.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
106.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
105.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
105.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
104.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
104.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
103.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
102.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
101.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
101.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
101.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
101.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
99.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
99.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
99.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
99.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
98.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
98.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
98.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
98.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
96.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
96.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
93.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
91.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
91.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
91.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
91.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
90.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
89.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
89.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
89.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
88.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
87.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
86.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
86.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
86.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
86.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
86.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
85.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
85.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
85.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
84.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
84.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
84.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
84.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
83.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
83.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
82.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
82.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
82.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
81.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
81.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
80.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
80.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
79.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
79.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
79.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
78.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
78.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
78.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
78.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
77.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
77.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
77.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
77.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
77.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
76.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
76.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
76.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
75.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
74.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
74.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
74.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
73.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
72.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
72.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
71.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
71.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
70.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
70.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
70.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
69.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
69.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
69.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
68.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
68.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
67.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
67.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
67.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
67.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
66.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
65.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
65.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
64.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
64.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
64.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
64.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
64.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
63.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
63.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
63.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
63.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
62.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
62.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
62.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
62.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
62.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
62.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
61.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
61.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
61.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
61.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
60.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
59.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
59.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
59.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
58.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
58.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
58.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
57.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
57.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
56.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
55.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
54.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
54.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
54.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
53.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
53.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
53.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
53.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
53.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
52.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
52.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
51.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
51.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
50.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
50.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
50.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
50.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
49.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
48.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
48.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
48.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
48.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
48.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
47.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
47.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
47.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
47.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
44.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
44.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
44.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
44.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
43.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
42.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
42.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
42.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
42.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
41.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
41.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
41.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
40.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
39.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
39.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
38.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
37.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
36.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
35.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
34.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
34.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
31.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
30.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
30.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
27.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
24.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
0.8
1013
Tumor
0.8
147
Tumor
0.5
983
Tumor
0.5
815
Tumor
0.5
965
Tumor
0.5
537
Tumor
0.5
1043
Tumor
0.5
1021
Tumor
0.4
745
Tumor
0.4
567
Tumor
0.4
737
Tumor
0.4
743
Tumor
0.4
865
Tumor
0.4
527
Tumor
0.4
951
Tumor
0.4
227
Tumor
0.3
661
Tumor
0.3
471
Tumor
0.3
1031
Tumor
0.3
123
Tumor
0.3
477
Tumor
0.3
425
Tumor
0.3
285
Tumor
0.3
617
Tumor
0.3
921
Tumor
0.3
473
Tumor
0.3
331
Tumor
0.2
697
Tumor
0.2
813
Tumor
0.2
367
Tumor
0.2
923
Tumor
0.2
957
Tumor
0.2
663
Tumor
0.2
515
Tumor
0.2
553
Tumor
0.2
966
Normal
0.2
363
Tumor
0.2
351
Tumor
0.2
755
Tumor
0.2
967
Tumor
0.2
746
Normal
0.2
952
Normal
0.2
327
Tumor
0.2
436
Normal
0.2
391
Tumor
0.2
738
Normal
0.2
695
Tumor
0.2
431
Tumor
0.2
1026
Normal
0.2
873
Tumor
0.1
1022
Normal
0.1
723
Tumor
0.1
955
Tumor
0.1
911
Tumor
0.1
915
Tumor
0.1
685
Tumor
0.1
411
Tumor
0.1
728
Normal
0.1
742
Normal
0.1
491
Tumor
0.1
221
Tumor
0.1
981
Tumor
0.1
956
Normal
0.1
525
Tumor
0.1
463
Tumor
0.1
443
Tumor
0.1
1045
Tumor
0.1
448
Normal
0.1
546
Normal
0.1
211
Tumor
0.1
445
Tumor
0.1
472
Normal
0.1
863
Tumor
0.1
862
Normal
0.1
416
Normal
0.1
944
Normal
0.1
113
Tumor
0.1
977
Tumor
0.1
128
Normal
0.1
415
Tumor
0.1
328
Normal
0.1
727
Tumor
0.1
474
Normal
0.1
516
Normal
0.1
741
Tumor
0.1
484
Normal
0.1
924
Normal
0.1
964
Normal
0.1
714
Normal
0.1
982
Normal
0.0
534
Normal
0.0
938
Normal
0.0
412
Normal
0.0
125
Tumor
0.0
228
Normal
0.0
968
Normal
0.0
364
Normal
0.0
1015
Tumor
0.0
528
Normal
0.0
137
Tumor
0.0
777
Tumor
0.0
647
Tumor
0.0
518
Normal
0.0
724
Normal
0.0
571
Tumor
0.0
286
Normal
0.0
877
Tumor
0.0
414
Normal
0.0
342
Normal
0.0
953
Tumor
0.0
864
Normal
0.0
778
Normal
0.0
313
Tumor
0.0
353
Tumor
0.0
523
Tumor
0.0
635
Tumor
0.0
483
Tumor
0.0
627
Tumor
0.0
466
Normal
0.0
866
Normal
0.0
494
Normal
0.0
914
Normal
0.0
722
Normal
0.0
696
Normal
0.0
867
Tumor
0.0
271
Tumor
0.0
111
Normal
0.0
976
Normal
0.0
298
Normal
0.0
482
Normal
0.0
816
Normal
0.0
212
Normal
0.0
1027
Tumor
0.0
698
Normal
0.0
975
Tumor
0.0
883
Tumor
0.0
1028
Normal
0.0
874
Normal
0.0
1016
Normal
0.0
395
Tumor
0.0
455
Tumor
0.0
284
Normal
0.0
554
Normal
0.0
916
Normal
0.0
824
Normal
0.0
943
Tumor
0.0
573
Tumor
0.0
861
Tumor
0.0
488
Normal
0.0
517
Tumor
0.0
272
Normal
-0.1
231
Tumor
-0.1
756
Normal
-0.1
462
Normal
-0.1
858
Normal
-0.1
262
Normal
-0.1
223
Tumor
-0.1
447
Tumor
-0.1
817
Tumor
-0.1
356
Normal
-0.1
424
Normal
-0.1
487
Tumor
-0.1
1014
Normal
-0.1
141
Tumor
-0.1
958
Normal
-0.1
365
Tumor
-0.1
283
Tumor
-0.1
311
Tumor
-0.1
926
Normal
-0.1
456
Normal
-0.1
218
Normal
-0.1
222
Normal
-0.1
881
Tumor
-0.1
426
Normal
-0.1
261
Tumor
-0.1
465
Tumor
-0.1
142
Normal
-0.1
217
Tumor
-0.1
868
Normal
-0.1
162
Normal
-0.1
686
Normal
-0.1
922
Normal
-0.1
386
Normal
-0.1
423
Tumor
-0.1
422
Normal
-0.1
526
Normal
-0.1
492
Normal
-0.1
357
Tumor
-0.1
1032
Normal
-0.1
214
Normal
-0.1
428
Normal
-0.1
186
Normal
-0.1
648
Normal
-0.1
558
Normal
-0.1
536
Normal
-0.1
196
Normal
-0.1
716
Normal
-0.1
355
Tumor
-0.1
786
Normal
-0.1
127
Tumor
-0.1
818
Normal
-0.1
1044
Normal
-0.1
224
Normal
-0.1
278
Normal
-0.1
497
Tumor
-0.1
538
Normal
-0.1
132
Normal
-0.1
925
Tumor
-0.1
148
Normal
-0.1
963
Tumor
-0.1
366
Normal
-0.1
918
Normal
-0.1
376
Normal
-0.1
432
Normal
-0.1
524
Normal
-0.1
464
Normal
-0.1
978
Normal
-0.1
362
Normal
-0.1
882
Normal
-0.1
478
Normal
-0.1
136
Normal
-0.1
984
Normal
-0.1
358
Normal
-0.1
434
Normal
-0.1
452
Normal
-0.1
878
Normal
-0.1
514
Normal
-0.1
124
Normal
-0.1
852
Normal
-0.1
564
Normal
-0.1
744
Normal
-0.1
662
Normal
-0.1
344
Normal
-0.1
572
Normal
-0.1
574
Normal
-0.1
533
Tumor
-0.2
814
Normal
-0.2
785
Tumor
-0.2
912
Normal
-0.2
187
Tumor
-0.2
1042
Normal
-0.2
433
Tumor
-0.2
312
Normal
-0.2
713
Tumor
-0.2
618
Normal
-0.2
258
Normal
-0.2
664
Normal
-0.2
385
Tumor
-0.2
616
Normal
-0.2
297
Tumor
-0.2
232
Normal
-0.2
172
Normal
-0.2
114
Normal
-0.2
361
Tumor
-0.2
277
Tumor
-0.2
421
Tumor
-0.2
665
Tumor
-0.2
568
Normal
-0.2
112
Tumor
-0.2
823
Tumor
-0.2
468
Normal
-0.2
185
Tumor
-0.2
368
Normal
-0.2
461
Tumor
-0.2
375
Tumor
-0.2
387
Tumor
-0.2
1025
Tumor
-0.2
138
Normal
-0.2
126
Normal
-0.2
1046
Normal
-0.2
715
Tumor
-0.2
146
Normal
-0.2
493
Tumor
-0.2
435
Tumor
-0.2
513
Tumor
-0.2
394
Normal
-0.2
354
Normal
-0.2
332
Normal
-0.2
314
Normal
-0.2
427
Tumor
-0.2
884
Normal
-0.2
954
Normal
-0.2
535
Tumor
-0.2
446
Normal
-0.2
188
Normal
-0.2
392
Normal
-0.3
352
Normal
-0.3
413
Tumor
-0.3
563
Tumor
-0.3
213
Tumor
-0.3
666
Normal
-0.3
192
Normal
-0.3
642
Normal
-0.3
721
Tumor
-0.3
267
Tumor
-0.3
641
Tumor
-0.3
636
Normal
-0.3
451
Tumor
-0.3
396
Normal
-0.3
191
Tumor
-0.3
268
Normal
-0.3
615
Tumor
-0.3
628
Normal
-0.3
388
Normal
-0.3
851
Tumor
-0.3
545
Tumor
-0.3
383
Tumor
-0.4
341
Tumor
-0.4
498
Normal
-0.4
393
Tumor
-0.4
257
Tumor
-0.4
917
Tumor
-0.4
171
Tumor
-0.4
481
Tumor
-0.4
857
Tumor
-0.4
161
Tumor
-0.4
1041
Tumor
-0.4
671
Tumor
-0.4
913
Tumor
-0.4
384
Normal
-0.4
195
Tumor
-0.4
444
Normal
-0.4
145
Tumor
-0.5
937
Tumor
-0.5
557
Tumor
-0.5
343
Tumor
-0.5
467
Tumor
-0.5
135
Tumor
-0.6
672
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
