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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACAT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
255.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
234.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
222.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
219.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
202.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
200.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
198.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
168.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
159.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
158.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
155.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
146.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
144.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
139.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
137.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
136.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
136.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
132.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
131.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
130.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
124.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
124.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
124.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
120.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
119.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
116.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
115.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
113.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
112.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
112.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
112.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
110.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
108.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
107.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
107.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
106.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
106.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
101.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
97.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
97.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
97.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
97.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
97.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
96.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
95.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
94.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
94.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
93.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
93.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
92.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
90.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
90.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
89.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
89.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
89.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
88.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
87.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
82.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
82.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
82.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
82.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
81.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
81.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
80.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
80.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
80.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
80.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
80.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
80.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
79.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
79.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
78.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
78.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
77.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
77.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
77.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
77.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
76.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
76.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
74.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
73.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
71.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
70.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
69.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
68.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
68.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
68.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
67.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
67.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
66.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
66.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
66.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
65.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
65.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
65.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
64.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
64.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
64.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
64.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
63.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
60.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
60.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
60.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
60.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
59.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
59.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
59.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
59.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
58.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
57.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
57.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
57.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
57.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
57.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
57.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
57.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
57.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
56.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
56.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
55.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
55.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
55.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
55.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
55.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
54.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
54.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
54.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
54.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
54.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
54.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
54.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
54.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
53.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
53.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
53.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
53.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
53.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
52.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
52.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
52.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
52.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
52.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
51.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
51.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
51.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
51.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
51.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
51.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
50.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
50.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
50.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
50.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
49.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
49.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
49.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
49.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
49.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
49.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
49.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
49.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
48.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
48.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
48.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
48.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
48.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
48.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
47.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
47.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
46.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
46.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
46.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
46.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
45.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
45.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
45.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
45.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
45.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
45.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
45.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
44.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
44.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
44.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
44.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
43.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
43.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
43.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
43.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
42.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
42.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
42.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
42.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
42.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
42.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
41.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
41.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
40.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
40.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
39.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
39.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
39.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
38.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
38.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
38.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
38.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
37.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
37.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
37.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
37.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
37.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
36.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
36.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
36.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
36.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
36.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
35.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
35.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
35.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
35.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
35.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
34.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
34.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
34.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
34.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
34.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
34.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
33.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
33.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
33.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
33.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
32.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
32.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
32.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
31.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
31.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
31.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
30.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
30.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
29.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
29.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
29.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
29.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
29.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
29.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
29.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
29.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
29.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
29.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
28.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
28.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
27.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
27.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
27.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
27.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
26.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
26.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
25.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
25.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
24.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
24.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
23.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
23.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
23.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
22.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
22.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
22.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
21.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
19.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
18.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
18.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
17.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
17.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
13.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACAT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
57.7
Number of samples
231
Samples
Sample
Description
TPM
DO45161
0 years, male, NA, stage:2, dead, 540 days
235.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
234.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
208.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
205.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
179.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
174.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
173.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
172.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
164.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
161.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
157.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
147.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
133.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
123.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
122.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
118.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
115.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
115.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
112.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
110.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
107.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
106.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
105.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
101.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
99.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
97.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
96.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
95.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
95.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
94.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
93.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
92.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
92.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
92.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
89.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
88.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
87.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
87.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
86.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
86.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
86.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
86.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
84.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
83.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
83.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
81.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
81.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
80.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
79.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
79.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
79.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
78.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
77.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
77.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
76.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
75.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
75.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
74.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
74.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
74.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
72.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
72.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
71.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
71.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
71.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
70.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
70.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
68.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
68.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
67.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
67.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
67.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
66.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
66.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
66.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
65.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
65.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
65.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
65.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
64.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
63.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
62.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
62.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
61.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
61.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
60.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
60.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
59.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
59.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
59.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
56.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
55.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
55.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
55.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
54.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
54.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
54.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
54.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
53.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
52.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
51.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
51.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
51.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
51.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
50.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
50.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
50.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
49.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
47.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
47.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
47.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
47.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
47.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
46.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
46.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
46.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
46.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
45.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
45.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
45.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
44.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
44.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
44.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
44.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
43.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
43.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
43.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
43.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
42.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
42.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
42.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
42.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
41.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
40.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
40.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
39.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
39.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
38.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
37.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
37.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
37.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
37.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
36.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
35.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
35.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
34.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
34.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
34.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
33.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
33.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
33.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
32.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
32.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
31.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
30.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
30.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
30.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
28.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
28.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
28.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
28.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
27.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
27.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
27.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
27.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
27.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
26.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
25.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
24.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
24.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
22.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
21.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
20.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
20.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
8.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
342
Normal
1.0
746
Normal
0.9
462
Normal
0.8
742
Normal
0.8
436
Normal
0.7
186
Normal
0.7
366
Normal
0.7
227
Tumor
0.6
738
Normal
0.6
361
Tumor
0.6
358
Normal
0.6
882
Normal
0.6
196
Normal
0.6
298
Normal
0.6
222
Normal
0.5
1043
Tumor
0.5
432
Normal
0.5
413
Tumor
0.5
744
Normal
0.5
1026
Normal
0.5
452
Normal
0.5
363
Tumor
0.5
332
Normal
0.5
723
Tumor
0.5
537
Tumor
0.4
1022
Normal
0.4
414
Normal
0.4
564
Normal
0.4
272
Normal
0.4
394
Normal
0.4
518
Normal
0.4
698
Normal
0.4
878
Normal
0.4
695
Tumor
0.4
132
Normal
0.4
938
Normal
0.4
162
Normal
0.4
456
Normal
0.4
982
Normal
0.3
314
Normal
0.3
966
Normal
0.3
172
Normal
0.3
146
Normal
0.3
745
Tumor
0.3
424
Normal
0.3
714
Normal
0.3
664
Normal
0.3
477
Tumor
0.3
648
Normal
0.3
862
Normal
0.3
722
Normal
0.3
435
Tumor
0.3
262
Normal
0.3
114
Normal
0.3
728
Normal
0.3
924
Normal
0.3
422
Normal
0.3
472
Normal
0.3
354
Normal
0.3
568
Normal
0.3
428
Normal
0.3
426
Normal
0.3
964
Normal
0.3
258
Normal
0.3
286
Normal
0.3
448
Normal
0.3
824
Normal
0.3
756
Normal
0.3
376
Normal
0.3
465
Tumor
0.3
616
Normal
0.3
618
Normal
0.3
214
Normal
0.2
232
Normal
0.2
1044
Normal
0.2
818
Normal
0.2
392
Normal
0.2
464
Normal
0.2
356
Normal
0.2
864
Normal
0.2
218
Normal
0.2
112
Tumor
0.2
858
Normal
0.2
741
Tumor
0.2
344
Normal
0.2
228
Normal
0.2
572
Normal
0.2
488
Normal
0.2
482
Normal
0.2
124
Normal
0.2
546
Normal
0.2
357
Tumor
0.2
267
Tumor
0.2
111
Normal
0.2
123
Tumor
0.2
716
Normal
0.2
136
Normal
0.2
1014
Normal
0.2
912
Normal
0.2
884
Normal
0.2
952
Normal
0.2
778
Normal
0.2
352
Normal
0.2
571
Tumor
0.1
423
Tumor
0.1
362
Normal
0.1
874
Normal
0.1
466
Normal
0.1
142
Normal
0.1
956
Normal
0.1
1016
Normal
0.1
1032
Normal
0.1
816
Normal
0.1
277
Tumor
0.1
388
Normal
0.1
968
Normal
0.1
1046
Normal
0.1
914
Normal
0.1
285
Tumor
0.1
138
Normal
0.1
412
Normal
0.1
148
Normal
0.1
474
Normal
0.1
852
Normal
0.1
386
Normal
0.1
278
Normal
0.1
128
Normal
0.1
866
Normal
0.1
954
Normal
0.1
617
Tumor
0.1
1027
Tumor
0.1
642
Normal
0.1
967
Tumor
0.1
147
Tumor
0.1
434
Normal
0.1
113
Tumor
0.0
926
Normal
0.0
922
Normal
0.0
662
Normal
0.0
868
Normal
0.0
534
Normal
0.0
384
Normal
0.0
416
Normal
0.0
686
Normal
0.0
494
Normal
0.0
554
Normal
0.0
224
Normal
0.0
365
Tumor
0.0
666
Normal
0.0
921
Tumor
0.0
1028
Normal
0.0
463
Tumor
0.0
944
Normal
0.0
558
Normal
0.0
468
Normal
0.0
696
Normal
0.0
387
Tumor
0.0
312
Normal
0.0
192
Normal
-0.1
364
Normal
-0.1
923
Tumor
-0.1
368
Normal
-0.1
786
Normal
-0.1
563
Tumor
-0.1
517
Tumor
-0.1
526
Normal
-0.1
271
Tumor
-0.1
574
Normal
-0.1
212
Normal
-0.1
484
Normal
-0.1
446
Normal
-0.1
516
Normal
-0.1
958
Normal
-0.1
883
Tumor
-0.1
141
Tumor
-0.1
528
Normal
-0.1
445
Tumor
-0.1
1021
Tumor
-0.1
628
Normal
-0.1
284
Normal
-0.2
411
Tumor
-0.2
328
Normal
-0.2
1042
Normal
-0.2
443
Tumor
-0.2
131
Tumor
-0.2
976
Normal
-0.2
451
Tumor
-0.2
217
Tumor
-0.2
396
Normal
-0.2
851
Tumor
-0.2
727
Tumor
-0.2
918
Normal
-0.2
978
Normal
-0.2
188
Normal
-0.2
126
Normal
-0.2
341
Tumor
-0.2
391
Tumor
-0.2
743
Tumor
-0.3
983
Tumor
-0.3
647
Tumor
-0.3
145
Tumor
-0.3
185
Tumor
-0.3
313
Tumor
-0.3
327
Tumor
-0.3
953
Tumor
-0.3
355
Tumor
-0.3
538
Normal
-0.3
478
Normal
-0.3
636
Normal
-0.4
672
Normal
-0.4
268
Normal
-0.4
963
Tumor
-0.4
514
Normal
-0.4
755
Tumor
-0.4
223
Tumor
-0.4
421
Tumor
-0.4
161
Tumor
-0.4
257
Tumor
-0.4
567
Tumor
-0.4
984
Normal
-0.4
627
Tumor
-0.4
955
Tumor
-0.4
492
Normal
-0.4
415
Tumor
-0.4
497
Tumor
-0.4
444
Normal
-0.4
461
Tumor
-0.4
127
Tumor
-0.5
191
Tumor
-0.5
957
Tumor
-0.5
981
Tumor
-0.5
724
Normal
-0.5
863
Tumor
-0.5
498
Normal
-0.5
951
Tumor
-0.5
975
Tumor
-0.5
877
Tumor
-0.5
483
Tumor
-0.5
867
Tumor
-0.5
865
Tumor
-0.5
221
Tumor
-0.5
823
Tumor
-0.5
916
Normal
-0.5
737
Tumor
-0.5
1031
Tumor
-0.5
965
Tumor
-0.5
353
Tumor
-0.5
171
Tumor
-0.5
135
Tumor
-0.6
431
Tumor
-0.6
785
Tumor
-0.6
1013
Tumor
-0.6
815
Tumor
-0.6
261
Tumor
-0.6
433
Tumor
-0.6
536
Normal
-0.6
425
Tumor
-0.6
137
Tumor
-0.6
447
Tumor
-0.6
641
Tumor
-0.6
663
Tumor
-0.7
471
Tumor
-0.7
331
Tumor
-0.7
481
Tumor
-0.7
861
Tumor
-0.7
367
Tumor
-0.7
455
Tumor
-0.7
665
Tumor
-0.7
615
Tumor
-0.7
1025
Tumor
-0.7
515
Tumor
-0.7
375
Tumor
-0.7
671
Tumor
-0.7
977
Tumor
-0.7
721
Tumor
-0.8
937
Tumor
-0.8
524
Normal
-0.8
187
Tumor
-0.8
195
Tumor
-0.8
231
Tumor
-0.8
873
Tumor
-0.8
911
Tumor
-0.8
473
Tumor
-0.8
881
Tumor
-0.8
814
Normal
-0.8
427
Tumor
-0.9
487
Tumor
-0.9
915
Tumor
-0.9
125
Tumor
-0.9
715
Tumor
-0.9
383
Tumor
-0.9
573
Tumor
-0.9
525
Tumor
-0.9
1045
Tumor
-1.0
817
Tumor
-1.0
713
Tumor
-1.0
535
Tumor
-1.0
1015
Tumor
-1.0
523
Tumor
-1.0
297
Tumor
-1.0
213
Tumor
-1.0
553
Tumor
-1.0
777
Tumor
-1.0
661
Tumor
-1.1
857
Tumor
-1.1
1041
Tumor
-1.1
467
Tumor
-1.1
943
Tumor
-1.1
513
Tumor
-1.1
925
Tumor
-1.1
557
Tumor
-1.1
635
Tumor
-1.2
493
Tumor
-1.2
813
Tumor
-1.2
351
Tumor
-1.3
283
Tumor
-1.3
343
Tumor
-1.3
311
Tumor
-1.3
917
Tumor
-1.3
491
Tumor
-1.4
385
Tumor
-1.4
527
Tumor
-1.4
393
Tumor
-1.4
685
Tumor
-1.5
395
Tumor
-1.5
211
Tumor
-1.5
697
Tumor
-1.6
533
Tumor
-1.7
913
Tumor
-1.7
545
Tumor
-2.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
