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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
2.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
1.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
1.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.4
Number of samples
231
Samples
Sample
Description
TPM
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
2.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
1.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
1.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
1.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
1.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
545
Tumor
2.0
331
Tumor
1.6
881
Tumor
1.6
343
Tumor
1.3
436
Normal
1.3
817
Tumor
1.2
446
Normal
1.2
432
Normal
1.2
297
Tumor
1.2
421
Tumor
1.2
286
Normal
1.2
455
Tumor
1.2
277
Tumor
1.1
958
Normal
1.0
498
Normal
1.0
478
Normal
1.0
456
Normal
1.0
375
Tumor
0.9
192
Normal
0.9
464
Normal
0.9
627
Tumor
0.9
452
Normal
0.9
497
Tumor
0.8
368
Normal
0.8
617
Tumor
0.8
384
Normal
0.8
283
Tumor
0.8
311
Tumor
0.8
473
Tumor
0.8
312
Normal
0.8
188
Normal
0.8
615
Tumor
0.8
427
Tumor
0.8
878
Normal
0.7
857
Tumor
0.7
224
Normal
0.7
471
Tumor
0.7
444
Normal
0.7
616
Normal
0.6
423
Tumor
0.6
483
Tumor
0.6
628
Normal
0.6
435
Tumor
0.5
913
Tumor
0.5
463
Tumor
0.5
422
Normal
0.5
636
Normal
0.5
196
Normal
0.5
618
Normal
0.5
366
Normal
0.5
434
Normal
0.5
222
Normal
0.5
488
Normal
0.5
278
Normal
0.5
466
Normal
0.4
462
Normal
0.4
223
Tumor
0.4
641
Tumor
0.4
365
Tumor
0.4
468
Normal
0.4
228
Normal
0.4
185
Tumor
0.4
477
Tumor
0.4
451
Tumor
0.4
635
Tumor
0.4
221
Tumor
0.3
976
Normal
0.3
424
Normal
0.3
191
Tumor
0.3
642
Normal
0.3
214
Normal
0.3
482
Normal
0.3
212
Normal
0.3
877
Tumor
0.3
376
Normal
0.3
433
Tumor
0.3
494
Normal
0.3
428
Normal
0.2
195
Tumor
0.2
218
Normal
0.2
823
Tumor
0.2
465
Tumor
0.2
966
Normal
0.2
484
Normal
0.2
481
Tumor
0.2
342
Normal
0.2
344
Normal
0.2
445
Tumor
0.2
414
Normal
0.2
217
Tumor
0.2
298
Normal
0.2
162
Normal
0.1
187
Tumor
0.1
353
Tumor
0.1
975
Tumor
0.1
965
Tumor
0.1
474
Normal
0.1
914
Normal
0.1
963
Tumor
0.1
161
Tumor
0.1
964
Normal
0.1
313
Tumor
0.1
426
Normal
0.1
172
Normal
0.1
472
Normal
0.0
148
Normal
0.0
383
Tumor
0.0
357
Tumor
0.0
883
Tumor
0.0
171
Tumor
0.0
284
Normal
0.0
968
Normal
0.0
858
Normal
0.0
186
Normal
0.0
912
Normal
0.0
527
Tumor
0.0
431
Tumor
0.0
546
Normal
0.0
358
Normal
0.0
211
Tumor
-0.1
461
Tumor
-0.1
314
Normal
-0.1
816
Normal
-0.1
882
Normal
-0.1
467
Tumor
-0.1
538
Normal
-0.1
852
Normal
-0.1
361
Tumor
-0.1
492
Normal
-0.1
341
Tumor
-0.1
147
Tumor
-0.2
528
Normal
-0.2
818
Normal
-0.2
352
Normal
-0.2
354
Normal
-0.2
884
Normal
-0.2
443
Tumor
-0.2
425
Tumor
-0.3
824
Normal
-0.3
213
Tumor
-0.3
493
Tumor
-0.3
332
Normal
-0.3
911
Tumor
-0.3
554
Normal
-0.3
367
Tumor
-0.4
227
Tumor
-0.4
534
Normal
-0.4
362
Normal
-0.4
285
Tumor
-0.4
553
Tumor
-0.5
351
Tumor
-0.5
413
Tumor
-0.5
533
Tumor
-0.6
487
Tumor
-0.6
537
Tumor
-0.7
967
Tumor
-0.8
957
Tumor
-0.8
491
Tumor
-0.8
815
Tumor
-1.0
851
Tumor
-1.4
231
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
142
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
977
Tumor
N/A
978
Normal
N/A
737
Tumor
N/A
738
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
756
Normal
N/A
515
Tumor
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
785
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
572
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
