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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GNA13 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
28.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
22.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
20.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
16.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
15.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
15.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
14.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
12.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
10.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
9.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
8.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
8.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
6.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GNA13 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
48.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
47.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
40.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
29.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
27.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
26.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
25.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
25.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
24.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
23.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
23.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
23.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
21.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
19.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
16.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
16.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
16.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
15.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
15.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
15.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
14.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
13.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
11.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
11.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
7.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
4.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
0.7
211
Tumor
0.6
425
Tumor
0.6
743
Tumor
0.5
131
Tumor
0.5
917
Tumor
0.4
427
Tumor
0.4
192
Normal
0.4
467
Tumor
0.4
455
Tumor
0.4
344
Normal
0.4
573
Tumor
0.4
478
Normal
0.4
545
Tumor
0.4
536
Normal
0.3
447
Tumor
0.3
393
Tumor
0.3
524
Normal
0.3
1025
Tumor
0.3
737
Tumor
0.3
954
Normal
0.3
686
Normal
0.3
375
Tumor
0.3
352
Normal
0.3
271
Tumor
0.3
343
Tumor
0.3
435
Tumor
0.3
498
Normal
0.3
523
Tumor
0.3
492
Normal
0.3
224
Normal
0.2
984
Normal
0.2
851
Tumor
0.2
916
Normal
0.2
685
Tumor
0.2
497
Tumor
0.2
938
Normal
0.2
434
Normal
0.2
744
Normal
0.2
877
Tumor
0.2
1032
Normal
0.2
395
Tumor
0.2
525
Tumor
0.2
213
Tumor
0.2
212
Normal
0.2
815
Tumor
0.2
958
Normal
0.2
742
Normal
0.2
472
Normal
0.2
1014
Normal
0.2
227
Tumor
0.2
383
Tumor
0.2
538
Normal
0.2
433
Tumor
0.2
953
Tumor
0.2
978
Normal
0.2
488
Normal
0.2
384
Normal
0.2
721
Tumor
0.2
146
Normal
0.2
965
Tumor
0.2
922
Normal
0.2
142
Normal
0.2
816
Normal
0.2
516
Normal
0.2
494
Normal
0.2
738
Normal
0.1
672
Normal
0.1
463
Tumor
0.1
1044
Normal
0.1
952
Normal
0.1
968
Normal
0.1
852
Normal
0.1
778
Normal
0.1
628
Normal
0.1
443
Tumor
0.1
126
Normal
0.1
716
Normal
0.1
484
Normal
0.1
572
Normal
0.1
112
Tumor
0.1
432
Normal
0.1
342
Normal
0.1
444
Normal
0.1
966
Normal
0.1
926
Normal
0.1
362
Normal
0.1
431
Tumor
0.1
461
Tumor
0.1
976
Normal
0.1
124
Normal
0.1
268
Normal
0.1
462
Normal
0.1
878
Normal
0.1
857
Tumor
0.1
964
Normal
0.1
387
Tumor
0.1
421
Tumor
0.1
528
Normal
0.1
977
Tumor
0.1
415
Tumor
0.1
817
Tumor
0.1
874
Normal
0.1
297
Tumor
0.1
664
Normal
0.1
567
Tumor
0.1
262
Normal
0.1
284
Normal
0.1
456
Normal
0.1
386
Normal
0.1
714
Normal
0.1
187
Tumor
0.1
824
Normal
0.1
982
Normal
0.1
482
Normal
0.1
756
Normal
0.1
723
Tumor
0.1
312
Normal
0.1
125
Tumor
0.1
392
Normal
0.1
162
Normal
0.1
574
Normal
0.1
786
Normal
0.1
221
Tumor
0.1
1016
Normal
0.1
918
Normal
0.1
884
Normal
0.1
356
Normal
0.1
1041
Tumor
0.1
818
Normal
0.1
147
Tumor
0.1
354
Normal
0.1
527
Tumor
0.1
666
Normal
0.1
172
Normal
0.1
1028
Normal
0.1
188
Normal
0.1
924
Normal
0.1
518
Normal
0.1
358
Normal
0.1
715
Tumor
0.1
272
Normal
0.1
394
Normal
0.1
277
Tumor
0.1
728
Normal
0.1
741
Tumor
0.1
981
Tumor
0.1
526
Normal
0.1
185
Tumor
0.1
882
Normal
0.1
944
Normal
0.1
533
Tumor
0.1
1022
Normal
0.1
635
Tumor
0.1
376
Normal
0.1
412
Normal
0.1
355
Tumor
0.1
471
Tumor
0.1
661
Tumor
0.1
311
Tumor
0.1
468
Normal
0.1
514
Normal
0.1
217
Tumor
0.1
328
Normal
0.1
396
Normal
0.1
171
Tumor
0.1
135
Tumor
0.1
466
Normal
0.1
364
Normal
0.0
616
Normal
0.0
713
Tumor
0.0
814
Normal
0.0
861
Tumor
0.0
866
Normal
0.0
558
Normal
0.0
357
Tumor
0.0
663
Tumor
0.0
223
Tumor
0.0
191
Tumor
0.0
464
Normal
0.0
883
Tumor
0.0
534
Normal
0.0
1031
Tumor
0.0
474
Normal
0.0
332
Normal
0.0
366
Normal
0.0
138
Normal
0.0
232
Normal
0.0
196
Normal
0.0
448
Normal
0.0
864
Normal
0.0
1042
Normal
0.0
627
Tumor
0.0
368
Normal
0.0
568
Normal
0.0
868
Normal
0.0
1027
Tumor
0.0
648
Normal
0.0
388
Normal
0.0
367
Tumor
0.0
937
Tumor
0.0
975
Tumor
0.0
222
Normal
0.0
823
Tumor
0.0
477
Tumor
0.0
618
Normal
0.0
132
Normal
0.0
416
Normal
0.0
617
Tumor
0.0
195
Tumor
0.0
563
Tumor
0.0
436
Normal
0.0
943
Tumor
0.0
746
Normal
0.0
724
Normal
0.0
696
Normal
0.0
546
Normal
0.0
298
Normal
0.0
452
Normal
0.0
867
Tumor
0.0
983
Tumor
0.0
662
Normal
0.0
111
Normal
0.0
881
Tumor
0.0
636
Normal
0.0
218
Normal
0.0
912
Normal
0.0
314
Normal
0.0
136
Normal
0.0
446
Normal
0.0
414
Normal
0.0
353
Tumor
0.0
671
Tumor
0.0
228
Normal
0.0
785
Tumor
0.0
1013
Tumor
0.0
331
Tumor
0.0
956
Normal
0.0
483
Tumor
0.0
863
Tumor
0.0
554
Normal
0.0
1046
Normal
0.0
214
Normal
0.0
148
Normal
0.0
114
Normal
0.0
258
Normal
0.0
1026
Normal
0.0
564
Normal
0.0
858
Normal
0.0
641
Tumor
0.0
1045
Tumor
0.0
186
Normal
0.0
283
Tumor
0.0
963
Tumor
0.0
862
Normal
0.0
722
Normal
0.0
921
Tumor
0.0
865
Tumor
0.0
363
Tumor
-0.1
695
Tumor
-0.1
553
Tumor
-0.1
422
Normal
-0.1
424
Normal
-0.1
137
Tumor
-0.1
914
Normal
-0.1
286
Normal
-0.1
493
Tumor
-0.1
642
Normal
-0.1
491
Tumor
-0.1
535
Tumor
-0.1
557
Tumor
-0.1
278
Normal
-0.1
813
Tumor
-0.1
913
Tumor
-0.1
428
Normal
-0.1
955
Tumor
-0.1
413
Tumor
-0.1
128
Normal
-0.1
426
Normal
-0.1
365
Tumor
-0.1
1043
Tumor
-0.1
873
Tumor
-0.1
451
Tumor
-0.1
951
Tumor
-0.1
915
Tumor
-0.1
923
Tumor
-0.1
755
Tumor
-0.1
777
Tumor
-0.1
697
Tumor
-0.1
445
Tumor
-0.1
231
Tumor
-0.1
161
Tumor
-0.1
473
Tumor
-0.1
481
Tumor
-0.1
145
Tumor
-0.1
141
Tumor
-0.1
487
Tumor
-0.1
698
Normal
-0.2
615
Tumor
-0.2
391
Tumor
-0.2
513
Tumor
-0.2
127
Tumor
-0.2
925
Tumor
-0.2
411
Tumor
-0.2
571
Tumor
-0.2
257
Tumor
-0.2
665
Tumor
-0.2
385
Tumor
-0.2
465
Tumor
-0.2
1015
Tumor
-0.2
341
Tumor
-0.2
261
Tumor
-0.2
745
Tumor
-0.2
727
Tumor
-0.2
351
Tumor
-0.3
1021
Tumor
-0.3
361
Tumor
-0.3
113
Tumor
-0.3
515
Tumor
-0.3
537
Tumor
-0.3
423
Tumor
-0.3
911
Tumor
-0.3
285
Tumor
-0.3
517
Tumor
-0.3
647
Tumor
-0.4
267
Tumor
-0.4
327
Tumor
-0.4
313
Tumor
-0.5
967
Tumor
-0.5
123
Tumor
-0.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
