We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIPF4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
9.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
8.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
7.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
6.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
6.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
5.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
5.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
5.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
4.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
4.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
4.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
4.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
3.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
3.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
3.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
3.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
3.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
2.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YIPF4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.1
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
35.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
32.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
31.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
28.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
25.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
24.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
21.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
20.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
19.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
19.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
19.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
19.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
19.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
18.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
17.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
17.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
17.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
16.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
16.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
15.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
13.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
12.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
10.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
10.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
9.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
967
Tumor
1.1
724
Normal
1.0
951
Tumor
0.8
965
Tumor
0.8
351
Tumor
0.8
857
Tumor
0.7
427
Tumor
0.7
1013
Tumor
0.7
445
Tumor
0.6
527
Tumor
0.6
573
Tumor
0.6
1041
Tumor
0.6
567
Tumor
0.6
1015
Tumor
0.6
925
Tumor
0.5
697
Tumor
0.5
957
Tumor
0.5
661
Tumor
0.5
823
Tumor
0.5
533
Tumor
0.5
911
Tumor
0.5
535
Tumor
0.5
1021
Tumor
0.5
937
Tumor
0.5
953
Tumor
0.5
517
Tumor
0.5
923
Tumor
0.5
1027
Tumor
0.5
231
Tumor
0.5
745
Tumor
0.4
983
Tumor
0.4
147
Tumor
0.4
461
Tumor
0.4
367
Tumor
0.4
617
Tumor
0.4
741
Tumor
0.4
755
Tumor
0.4
515
Tumor
0.4
471
Tumor
0.4
913
Tumor
0.4
327
Tumor
0.4
525
Tumor
0.4
557
Tumor
0.4
647
Tumor
0.4
1045
Tumor
0.4
743
Tumor
0.4
665
Tumor
0.3
815
Tumor
0.3
383
Tumor
0.3
211
Tumor
0.3
1044
Normal
0.3
448
Normal
0.3
443
Tumor
0.3
963
Tumor
0.3
943
Tumor
0.3
123
Tumor
0.3
285
Tumor
0.3
131
Tumor
0.3
267
Tumor
0.3
357
Tumor
0.3
451
Tumor
0.3
1043
Tumor
0.3
727
Tumor
0.3
553
Tumor
0.3
447
Tumor
0.3
873
Tumor
0.3
435
Tumor
0.2
431
Tumor
0.2
135
Tumor
0.2
863
Tumor
0.2
171
Tumor
0.2
922
Normal
0.2
813
Tumor
0.2
851
Tumor
0.2
915
Tumor
0.2
571
Tumor
0.2
663
Tumor
0.2
977
Tumor
0.2
331
Tumor
0.2
191
Tumor
0.2
528
Normal
0.2
1025
Tumor
0.2
545
Tumor
0.2
968
Normal
0.2
423
Tumor
0.2
223
Tumor
0.1
536
Normal
0.1
361
Tumor
0.1
627
Tumor
0.1
413
Tumor
0.1
393
Tumor
0.1
421
Tumor
0.1
257
Tumor
0.1
497
Tumor
0.1
232
Normal
0.1
481
Tumor
0.1
728
Normal
0.1
817
Tumor
0.1
161
Tumor
0.1
488
Normal
0.1
1014
Normal
0.1
635
Tumor
0.1
145
Tumor
0.1
425
Tumor
0.1
341
Tumor
0.1
883
Tumor
0.1
514
Normal
0.1
1046
Normal
0.1
261
Tumor
0.1
487
Tumor
0.1
526
Normal
0.1
737
Tumor
0.1
283
Tumor
0.1
685
Tumor
0.1
537
Tumor
0.1
195
Tumor
0.1
824
Normal
0.1
964
Normal
0.1
493
Tumor
0.1
213
Tumor
0.1
484
Normal
0.1
491
Tumor
0.1
671
Tumor
0.1
641
Tumor
0.1
978
Normal
0.1
534
Normal
0.0
433
Tumor
0.0
615
Tumor
0.0
228
Normal
0.0
814
Normal
0.0
286
Normal
0.0
546
Normal
0.0
975
Tumor
0.0
698
Normal
0.0
981
Tumor
0.0
1031
Tumor
0.0
375
Tumor
0.0
874
Normal
0.0
452
Normal
0.0
463
Tumor
0.0
395
Tumor
0.0
966
Normal
0.0
958
Normal
0.0
477
Tumor
0.0
926
Normal
0.0
867
Tumor
0.0
396
Normal
0.0
332
Normal
0.0
1016
Normal
0.0
921
Tumor
0.0
884
Normal
0.0
394
Normal
0.0
861
Tumor
0.0
984
Normal
0.0
353
Tumor
0.0
187
Tumor
0.0
415
Tumor
0.0
722
Normal
0.0
744
Normal
0.0
523
Tumor
-0.1
918
Normal
-0.1
391
Tumor
-0.1
462
Normal
-0.1
494
Normal
-0.1
742
Normal
-0.1
365
Tumor
-0.1
944
Normal
-0.1
858
Normal
-0.1
356
Normal
-0.1
882
Normal
-0.1
137
Tumor
-0.1
912
Normal
-0.1
865
Tumor
-0.1
343
Tumor
-0.1
312
Normal
-0.1
786
Normal
-0.1
952
Normal
-0.1
746
Normal
-0.1
411
Tumor
-0.1
916
Normal
-0.1
518
Normal
-0.1
852
Normal
-0.1
721
Tumor
-0.1
513
Tumor
-0.1
298
Normal
-0.1
482
Normal
-0.1
221
Tumor
-0.1
636
Normal
-0.1
756
Normal
-0.1
227
Tumor
-0.1
777
Tumor
-0.1
125
Tumor
-0.1
284
Normal
-0.1
785
Tumor
-0.1
723
Tumor
-0.1
878
Normal
-0.1
816
Normal
-0.1
262
Normal
-0.1
434
Normal
-0.1
314
Normal
-0.1
868
Normal
-0.1
465
Tumor
-0.1
368
Normal
-0.1
616
Normal
-0.2
524
Normal
-0.2
955
Tumor
-0.2
212
Normal
-0.2
917
Tumor
-0.2
185
Tumor
-0.2
738
Normal
-0.2
818
Normal
-0.2
554
Normal
-0.2
467
Tumor
-0.2
186
Normal
-0.2
862
Normal
-0.2
376
Normal
-0.2
148
Normal
-0.2
938
Normal
-0.2
113
Tumor
-0.2
392
Normal
-0.2
271
Tumor
-0.2
127
Tumor
-0.2
924
Normal
-0.2
1028
Normal
-0.2
976
Normal
-0.2
328
Normal
-0.2
648
Normal
-0.2
864
Normal
-0.2
558
Normal
-0.2
384
Normal
-0.2
112
Tumor
-0.2
982
Normal
-0.2
278
Normal
-0.2
446
Normal
-0.2
466
Normal
-0.2
563
Tumor
-0.2
258
Normal
-0.2
778
Normal
-0.2
436
Normal
-0.2
498
Normal
-0.2
572
Normal
-0.2
311
Tumor
-0.2
474
Normal
-0.2
1042
Normal
-0.2
224
Normal
-0.2
456
Normal
-0.2
866
Normal
-0.2
342
Normal
-0.2
1022
Normal
-0.2
664
Normal
-0.2
422
Normal
-0.2
472
Normal
-0.3
386
Normal
-0.3
218
Normal
-0.3
297
Tumor
-0.3
696
Normal
-0.3
162
Normal
-0.3
877
Tumor
-0.3
388
Normal
-0.3
362
Normal
-0.3
881
Tumor
-0.3
1032
Normal
-0.3
715
Tumor
-0.3
426
Normal
-0.3
468
Normal
-0.3
483
Tumor
-0.3
713
Tumor
-0.3
142
Normal
-0.3
464
Normal
-0.3
714
Normal
-0.3
568
Normal
-0.3
387
Tumor
-0.3
432
Normal
-0.3
455
Tumor
-0.3
366
Normal
-0.3
172
Normal
-0.3
914
Normal
-0.3
217
Tumor
-0.3
954
Normal
-0.3
355
Tumor
-0.3
628
Normal
-0.3
564
Normal
-0.3
1026
Normal
-0.3
516
Normal
-0.4
672
Normal
-0.4
428
Normal
-0.4
492
Normal
-0.4
662
Normal
-0.4
618
Normal
-0.4
352
Normal
-0.4
363
Tumor
-0.4
364
Normal
-0.4
141
Tumor
-0.4
412
Normal
-0.4
642
Normal
-0.4
188
Normal
-0.4
478
Normal
-0.4
424
Normal
-0.4
416
Normal
-0.4
272
Normal
-0.4
277
Tumor
-0.4
695
Tumor
-0.4
686
Normal
-0.4
716
Normal
-0.4
354
Normal
-0.4
268
Normal
-0.4
358
Normal
-0.5
444
Normal
-0.5
136
Normal
-0.5
666
Normal
-0.5
956
Normal
-0.5
344
Normal
-0.5
538
Normal
-0.5
414
Normal
-0.5
196
Normal
-0.5
313
Tumor
-0.5
214
Normal
-0.5
385
Tumor
-0.5
574
Normal
-0.5
473
Tumor
-0.5
138
Normal
-0.5
222
Normal
-0.6
124
Normal
-0.6
132
Normal
-0.6
111
Normal
-0.7
192
Normal
-0.7
128
Normal
-0.8
126
Normal
-0.8
146
Normal
-0.8
114
Normal
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
