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  • ALDH6A1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:66.5 nTPM
HPA Brain:106.1 nTPM
GTEx:66.5 nTPM
FANTOM5:163.6 Scaled Tags Per Million
Pig:59.5 nTPM
Mouse:46.2 nTPM
Allen mouse:2.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

106.1
Sample id Sample description nTPM
Amygdala
nTPM: 106.1
2695 Female, age 67, right hemisphere 118.4
2514 Male, age 75, right hemisphere 117.1
1987 Female, age 91, left hemisphere 102.0
2814 Male, age 76, right hemisphere 101.4
2517 Female, age 94, left hemisphere 91.6
Basal amygdala
nTPM: 84.3
2609 Male, age 75, right hemisphere 127.6
2243 Female, age 91, right hemisphere 94.6
1955 Male, age 76, both hemispheres 85.6
2110 Male, age 80, left hemisphere 84.8
2685 Female, age 94, left hemisphere 70.9
2827 Female, age 67, right hemisphere 42.3
Central amygdala
nTPM: 92.4
2515 Male, age 75, right hemisphere 105.5
1905 Male, age 76, both hemispheres 104.1
2239 Male, age 80, left hemisphere 91.3
2701 Female, age 91, right hemisphere 86.9
2826 Female, age 94, left hemisphere 74.3
Corticomedial amygdala
nTPM: 87.6
2428 Male, age 75, right hemisphere 108.8
2829 Male, age 80, left hemisphere 102.0
2429 Female, age 94, left hemisphere 94.6
2242 Female, age 91, right hemisphere 94.1
2240 Male, age 76, both hemispheres 79.1
2535 Female, age 67, right hemisphere 46.9
Lateral amygdala
nTPM: 82.7
2516 Male, age 75, right hemisphere 124.2
2255 Female, age 91, right hemisphere 90.2
1883 Male, age 76, both hemispheres 87.4
2256 Male, age 80, left hemisphere 79.8
2534 Female, age 94, left hemisphere 68.3
2830 Female, age 67, right hemisphere 46.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

66.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 66.5
Samples: 152

Max nTPM: 133.9
Min nTPM: 3.8
Std nTPM: 29.2
Median nTPM: 62.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 133.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 130.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 128.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 126.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 123.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 121.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 120.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 116.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 116.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 113.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 113.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 112.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 110.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 108.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 108.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 107.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 107.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 107.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 104.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 100.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 99.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 99.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 97.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 97.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 96.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 95.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 95.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 95.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 94.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 93.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 93.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 92.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 92.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 92.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 91.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 90.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 89.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 89.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 88.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 87.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 87.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 86.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 85.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 85.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 85.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 84.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 83.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 83.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 83.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 82.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 82.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 82.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 82.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 80.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 79.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 78.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 77.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 76.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 76.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 75.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 73.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 73.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 72.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 72.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 72.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 70.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 70.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 69.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 69.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 68.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 67.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 67.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 64.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 64.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 63.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 63.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 62.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 62.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 61.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 61.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 61.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 60.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 60.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 60.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 59.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 58.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 58.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 58.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 56.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 55.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 55.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 55.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 55.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 53.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 53.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 51.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 51.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 49.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 49.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 49.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 49.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 49.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 48.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 47.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 47.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 46.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 46.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 46.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 46.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 44.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 44.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 44.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 43.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 42.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 42.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 41.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 41.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 40.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 40.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 40.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 38.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 38.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 38.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 37.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 37.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 37.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 36.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 36.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 36.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 34.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 34.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 34.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 34.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 33.9
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 33.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 32.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 32.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 31.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 31.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 28.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 27.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 26.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 26.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 26.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 23.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 22.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 20.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 16.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 15.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 13.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 10.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 3.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

163.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 163.6
FF:10151-102I7 76 years, female 163.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.5
Pig sample Sample description nTPM
Amygdala
nTPM: 59.5
Samples: 4

Max nTPM: 65.8
Min nTPM: 52.4
Sample A Female 61.0
Sample B Female 65.8
Sample C Male 52.4
Sample D Male 58.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 46.2
Samples: 4

Max nTPM: 48.8
Min nTPM: 41.9
Sample A Male 41.9
Sample B Male 47.3
Sample C Female 48.8
Sample D Female 46.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.1
68445059 Antisense, RP_050111_02_F08, Mouse strain C57BL/6J (56 days, male) 2.1

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