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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBM25 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
20.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
14.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
12.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
11.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
11.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
6.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
4.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
3.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RBM25 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.8
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
76.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
71.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
69.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
66.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
64.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
58.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
57.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
57.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
56.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
56.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
55.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
54.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
53.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
53.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
52.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
51.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
48.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
48.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
48.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
46.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
46.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
46.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
44.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
44.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
43.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
42.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
42.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
40.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
40.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
40.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
40.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
39.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
37.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
37.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
36.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
36.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
36.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
36.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
35.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
35.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
35.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
35.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
34.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
34.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
33.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
33.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
33.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
32.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
32.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
32.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
32.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
32.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
32.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
31.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
31.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
31.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
31.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
31.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
30.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
30.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
30.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
30.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
29.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
29.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
29.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
29.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
28.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
28.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
28.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
28.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
28.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
27.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
27.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
27.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
27.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
26.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
26.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
26.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
25.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
25.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
25.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
25.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
24.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
24.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
24.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
24.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
22.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
22.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
22.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
21.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
21.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
21.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
20.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
20.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
19.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
19.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
18.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
18.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
15.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
1.1
131
Tumor
0.9
661
Tumor
0.9
967
Tumor
0.8
951
Tumor
0.8
743
Tumor
0.8
285
Tumor
0.8
865
Tumor
0.8
497
Tumor
0.8
473
Tumor
0.7
957
Tumor
0.7
965
Tumor
0.7
413
Tumor
0.7
727
Tumor
0.6
537
Tumor
0.6
983
Tumor
0.6
977
Tumor
0.6
817
Tumor
0.6
737
Tumor
0.6
535
Tumor
0.5
331
Tumor
0.5
211
Tumor
0.5
1031
Tumor
0.5
975
Tumor
0.5
411
Tumor
0.5
943
Tumor
0.5
523
Tumor
0.5
695
Tumor
0.5
427
Tumor
0.5
724
Normal
0.5
527
Tumor
0.5
463
Tumor
0.4
467
Tumor
0.4
937
Tumor
0.4
277
Tumor
0.4
385
Tumor
0.4
355
Tumor
0.4
545
Tumor
0.4
777
Tumor
0.4
813
Tumor
0.4
517
Tumor
0.4
814
Normal
0.4
493
Tumor
0.4
663
Tumor
0.4
881
Tumor
0.4
425
Tumor
0.4
313
Tumor
0.4
221
Tumor
0.4
1021
Tumor
0.4
227
Tumor
0.4
351
Tumor
0.3
715
Tumor
0.3
431
Tumor
0.3
721
Tumor
0.3
877
Tumor
0.3
1041
Tumor
0.3
447
Tumor
0.3
963
Tumor
0.3
363
Tumor
0.3
367
Tumor
0.3
283
Tumor
0.3
917
Tumor
0.3
1013
Tumor
0.3
391
Tumor
0.3
433
Tumor
0.3
685
Tumor
0.3
271
Tumor
0.3
557
Tumor
0.3
1025
Tumor
0.3
513
Tumor
0.3
383
Tumor
0.3
112
Tumor
0.3
921
Tumor
0.3
697
Tumor
0.2
213
Tumor
0.2
477
Tumor
0.2
471
Tumor
0.2
785
Tumor
0.2
297
Tumor
0.2
443
Tumor
0.2
311
Tumor
0.2
357
Tumor
0.2
553
Tumor
0.2
1015
Tumor
0.2
455
Tumor
0.2
815
Tumor
0.2
861
Tumor
0.2
953
Tumor
0.2
923
Tumor
0.2
647
Tumor
0.2
671
Tumor
0.2
445
Tumor
0.2
343
Tumor
0.2
161
Tumor
0.2
187
Tumor
0.2
375
Tumor
0.2
415
Tumor
0.2
665
Tumor
0.2
141
Tumor
0.1
185
Tumor
0.1
641
Tumor
0.1
525
Tumor
0.1
491
Tumor
0.1
617
Tumor
0.1
267
Tumor
0.1
573
Tumor
0.1
515
Tumor
0.1
461
Tumor
0.1
867
Tumor
0.1
823
Tumor
0.1
755
Tumor
0.1
113
Tumor
0.1
487
Tumor
0.1
1014
Normal
0.1
387
Tumor
0.1
571
Tumor
0.1
883
Tumor
0.1
135
Tumor
0.1
984
Normal
0.1
567
Tumor
0.1
481
Tumor
0.1
978
Normal
0.1
223
Tumor
0.1
536
Normal
0.1
451
Tumor
0.1
125
Tumor
0.1
966
Normal
0.1
483
Tumor
0.1
911
Tumor
0.1
365
Tumor
0.1
741
Tumor
0.1
913
Tumor
0.1
1043
Tumor
0.0
478
Normal
0.0
1045
Tumor
0.0
713
Tumor
0.0
492
Normal
0.0
341
Tumor
0.0
563
Tumor
0.0
231
Tumor
0.0
261
Tumor
0.0
191
Tumor
0.0
423
Tumor
0.0
1032
Normal
0.0
393
Tumor
0.0
955
Tumor
0.0
444
Normal
0.0
361
Tumor
0.0
863
Tumor
0.0
395
Tumor
0.0
873
Tumor
0.0
851
Tumor
0.0
524
Normal
0.0
217
Tumor
0.0
981
Tumor
0.0
938
Normal
0.0
686
Normal
0.0
435
Tumor
0.0
137
Tumor
0.0
195
Tumor
-0.1
534
Normal
-0.1
916
Normal
-0.1
384
Normal
-0.1
257
Tumor
-0.1
958
Normal
-0.1
538
Normal
-0.1
635
Tumor
-0.1
412
Normal
-0.1
498
Normal
-0.1
421
Tumor
-0.1
924
Normal
-0.1
857
Tumor
-0.1
434
Normal
-0.1
353
Tumor
-0.1
554
Normal
-0.1
494
Normal
-0.1
925
Tumor
-0.1
145
Tumor
-0.1
472
Normal
-0.1
922
Normal
-0.1
362
Normal
-0.1
268
Normal
-0.1
968
Normal
-0.1
944
Normal
-0.1
328
Normal
-0.1
558
Normal
-0.1
572
Normal
-0.1
915
Tumor
-0.1
488
Normal
-0.1
696
Normal
-0.1
778
Normal
-0.1
484
Normal
-0.1
147
Tumor
-0.1
1042
Normal
-0.2
546
Normal
-0.2
448
Normal
-0.2
516
Normal
-0.2
884
Normal
-0.2
123
Tumor
-0.2
482
Normal
-0.2
188
Normal
-0.2
474
Normal
-0.2
723
Tumor
-0.2
716
Normal
-0.2
745
Tumor
-0.2
171
Tumor
-0.2
954
Normal
-0.2
982
Normal
-0.2
1027
Tumor
-0.2
878
Normal
-0.2
284
Normal
-0.2
327
Tumor
-0.2
742
Normal
-0.2
964
Normal
-0.2
518
Normal
-0.2
918
Normal
-0.2
1016
Normal
-0.2
528
Normal
-0.2
368
Normal
-0.2
142
Normal
-0.2
462
Normal
-0.2
114
Normal
-0.2
356
Normal
-0.2
744
Normal
-0.2
1026
Normal
-0.2
1022
Normal
-0.2
756
Normal
-0.2
138
Normal
-0.2
714
Normal
-0.2
146
Normal
-0.2
366
Normal
-0.2
698
Normal
-0.2
376
Normal
-0.2
976
Normal
-0.2
738
Normal
-0.2
864
Normal
-0.2
568
Normal
-0.2
352
Normal
-0.2
272
Normal
-0.2
952
Normal
-0.2
1028
Normal
-0.2
912
Normal
-0.2
672
Normal
-0.2
514
Normal
-0.2
858
Normal
-0.2
662
Normal
-0.2
111
Normal
-0.2
436
Normal
-0.2
664
Normal
-0.2
262
Normal
-0.2
526
Normal
-0.2
126
Normal
-0.2
882
Normal
-0.2
868
Normal
-0.2
564
Normal
-0.2
1044
Normal
-0.2
666
Normal
-0.2
628
Normal
-0.2
786
Normal
-0.2
364
Normal
-0.2
127
Tumor
-0.2
926
Normal
-0.2
212
Normal
-0.2
258
Normal
-0.2
574
Normal
-0.3
465
Tumor
-0.3
232
Normal
-0.3
344
Normal
-0.3
866
Normal
-0.3
192
Normal
-0.3
852
Normal
-0.3
874
Normal
-0.3
132
Normal
-0.3
446
Normal
-0.3
1046
Normal
-0.3
862
Normal
-0.3
432
Normal
-0.3
128
Normal
-0.3
648
Normal
-0.3
746
Normal
-0.3
816
Normal
-0.3
422
Normal
-0.3
615
Tumor
-0.3
136
Normal
-0.3
124
Normal
-0.3
416
Normal
-0.3
148
Normal
-0.3
956
Normal
-0.3
456
Normal
-0.3
224
Normal
-0.3
218
Normal
-0.3
728
Normal
-0.3
342
Normal
-0.3
824
Normal
-0.3
228
Normal
-0.3
286
Normal
-0.3
636
Normal
-0.3
196
Normal
-0.3
464
Normal
-0.3
468
Normal
-0.3
386
Normal
-0.3
392
Normal
-0.3
914
Normal
-0.3
298
Normal
-0.3
722
Normal
-0.3
627
Tumor
-0.3
214
Normal
-0.3
186
Normal
-0.3
466
Normal
-0.3
354
Normal
-0.3
414
Normal
-0.3
396
Normal
-0.3
818
Normal
-0.3
616
Normal
-0.4
426
Normal
-0.4
172
Normal
-0.4
358
Normal
-0.4
332
Normal
-0.4
428
Normal
-0.4
314
Normal
-0.4
162
Normal
-0.4
424
Normal
-0.4
312
Normal
-0.4
278
Normal
-0.4
452
Normal
-0.4
618
Normal
-0.4
222
Normal
-0.4
394
Normal
-0.4
388
Normal
-0.5
642
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
