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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DLST is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
34.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
107.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
102.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
93.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
87.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
83.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
80.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
79.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
79.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
78.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
76.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
75.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
73.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
71.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
68.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
67.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
66.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
66.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
64.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
63.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
62.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
61.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
61.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
61.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
59.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
59.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
59.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
58.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
58.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
58.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
57.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
57.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
57.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
57.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
56.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
56.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
55.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
55.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
55.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
54.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
54.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
54.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
53.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
53.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
52.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
51.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
51.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
51.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
50.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
50.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
50.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
50.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
49.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
49.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
49.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
49.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
48.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
48.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
48.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
48.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
47.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
47.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
47.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
47.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
47.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
47.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
47.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
46.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
46.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
46.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
45.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
45.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
45.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
45.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
45.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
44.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
44.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
44.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
43.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
43.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
43.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
42.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
42.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
42.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
42.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
42.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
42.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
42.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
42.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
41.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
41.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
41.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
41.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
40.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
40.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
40.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
40.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
40.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
40.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
40.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
39.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
39.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
39.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
39.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
38.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
38.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
38.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
38.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
37.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
37.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
37.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
37.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
37.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
36.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
36.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
36.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
36.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
35.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
35.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
35.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
35.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
35.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
34.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
34.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
34.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
34.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
34.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
34.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
33.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
33.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
33.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
33.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
33.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
33.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
33.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
33.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
33.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
33.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
32.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
32.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
32.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
32.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
32.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
32.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
32.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
32.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
32.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
32.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
31.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
31.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
31.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
31.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
31.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
30.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
30.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
30.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
30.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
30.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
30.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
29.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
29.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
29.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
28.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
28.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
28.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
28.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
28.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
28.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
28.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
28.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
28.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
27.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
27.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
27.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
27.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
26.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
26.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
26.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
26.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
26.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
25.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
25.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
25.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
24.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
24.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
24.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
24.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
24.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
23.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
23.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
22.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
21.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
21.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
20.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
20.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
19.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
19.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
18.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
18.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
18.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
18.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
17.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
16.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
15.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
15.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
14.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
13.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
12.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
8.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DLST is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
36.6
Number of samples
231
Samples
Sample
Description
TPM
DO50844
0 years, male, NA, stage:4, alive, 300 days
164.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
80.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
78.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
78.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
77.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
72.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
68.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
67.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
66.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
64.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
63.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
63.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
63.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
62.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
62.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
59.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
59.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
59.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
58.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
56.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
56.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
55.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
55.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
55.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
55.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
53.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
53.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
53.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
53.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
52.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
52.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
51.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
50.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
50.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
49.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
48.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
47.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
47.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
47.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
46.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
46.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
46.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
46.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
46.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
45.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
45.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
45.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
45.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
45.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
44.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
44.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
43.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
42.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
42.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
42.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
42.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
42.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
42.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
42.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
42.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
41.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
41.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
41.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
41.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
40.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
40.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
40.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
40.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
39.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
39.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
39.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
38.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
38.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
38.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
38.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
37.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
37.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
37.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
36.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
36.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
36.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
36.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
36.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
36.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
36.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
35.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
35.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
35.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
35.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
34.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
34.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
34.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
34.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
33.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
32.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
32.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
32.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
32.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
32.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
31.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
31.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
31.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
31.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
31.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
31.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
31.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
31.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
30.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
30.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
30.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
30.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
29.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
29.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
29.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
29.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
29.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
28.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
28.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
28.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
28.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
27.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
27.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
27.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
27.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
26.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
26.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
26.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
26.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
26.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
25.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
25.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
24.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
24.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
24.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
24.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
23.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
23.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
23.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
22.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
18.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.2
227
Tumor
1.1
1027
Tumor
1.0
925
Tumor
0.7
513
Tumor
0.6
411
Tumor
0.6
745
Tumor
0.6
713
Tumor
0.5
452
Normal
0.5
873
Tumor
0.5
721
Tumor
0.5
636
Normal
0.5
172
Normal
0.5
635
Tumor
0.5
742
Normal
0.5
924
Normal
0.5
515
Tumor
0.5
756
Normal
0.5
1043
Tumor
0.4
186
Normal
0.4
967
Tumor
0.4
448
Normal
0.4
135
Tumor
0.4
864
Normal
0.4
462
Normal
0.4
698
Normal
0.4
922
Normal
0.4
954
Normal
0.4
786
Normal
0.4
356
Normal
0.4
145
Tumor
0.4
534
Normal
0.3
938
Normal
0.3
695
Tumor
0.3
128
Normal
0.3
911
Tumor
0.3
228
Normal
0.3
723
Tumor
0.3
648
Normal
0.3
361
Tumor
0.3
564
Normal
0.3
981
Tumor
0.3
1032
Normal
0.3
412
Normal
0.3
738
Normal
0.3
332
Normal
0.3
912
Normal
0.3
618
Normal
0.3
944
Normal
0.3
1041
Tumor
0.3
1022
Normal
0.3
914
Normal
0.3
342
Normal
0.3
423
Tumor
0.3
484
Normal
0.3
416
Normal
0.3
414
Normal
0.3
494
Normal
0.3
284
Normal
0.3
1046
Normal
0.3
863
Tumor
0.3
722
Normal
0.3
858
Normal
0.3
328
Normal
0.3
214
Normal
0.3
357
Tumor
0.3
868
Normal
0.3
572
Normal
0.3
196
Normal
0.2
488
Normal
0.2
744
Normal
0.2
615
Tumor
0.2
142
Normal
0.2
221
Tumor
0.2
344
Normal
0.2
882
Normal
0.2
823
Tumor
0.2
314
Normal
0.2
358
Normal
0.2
862
Normal
0.2
955
Tumor
0.2
388
Normal
0.2
815
Tumor
0.2
286
Normal
0.2
1026
Normal
0.2
716
Normal
0.2
557
Tumor
0.2
982
Normal
0.2
568
Normal
0.2
546
Normal
0.2
824
Normal
0.2
538
Normal
0.2
1045
Tumor
0.2
365
Tumor
0.2
746
Normal
0.2
714
Normal
0.2
162
Normal
0.2
426
Normal
0.2
755
Tumor
0.2
686
Normal
0.2
976
Normal
0.2
696
Normal
0.2
468
Normal
0.2
728
Normal
0.2
883
Tumor
0.2
526
Normal
0.2
466
Normal
0.2
978
Normal
0.2
878
Normal
0.2
212
Normal
0.2
224
Normal
0.2
958
Normal
0.2
354
Normal
0.2
232
Normal
0.2
376
Normal
0.2
1044
Normal
0.2
884
Normal
0.2
524
Normal
0.2
1042
Normal
0.2
514
Normal
0.2
422
Normal
0.2
364
Normal
0.2
366
Normal
0.2
313
Tumor
0.2
431
Tumor
0.2
132
Normal
0.2
926
Normal
0.2
278
Normal
0.2
436
Normal
0.2
741
Tumor
0.2
528
Normal
0.2
727
Tumor
0.1
222
Normal
0.1
231
Tumor
0.1
558
Normal
0.1
516
Normal
0.1
984
Normal
0.1
574
Normal
0.1
424
Normal
0.1
1014
Normal
0.1
472
Normal
0.1
518
Normal
0.1
852
Normal
0.1
672
Normal
0.1
642
Normal
0.1
964
Normal
0.1
482
Normal
0.1
616
Normal
0.1
138
Normal
0.1
554
Normal
0.1
148
Normal
0.1
298
Normal
0.1
866
Normal
0.1
563
Tumor
0.1
394
Normal
0.1
571
Tumor
0.1
628
Normal
0.1
428
Normal
0.1
918
Normal
0.1
446
Normal
0.1
392
Normal
0.1
474
Normal
0.1
267
Tumor
0.1
257
Tumor
0.1
1028
Normal
0.1
368
Normal
0.1
968
Normal
0.1
818
Normal
0.1
664
Normal
0.1
191
Tumor
0.1
956
Normal
0.1
478
Normal
0.1
685
Tumor
0.1
352
Normal
0.1
874
Normal
0.1
432
Normal
0.1
533
Tumor
0.1
1016
Normal
0.1
867
Tumor
0.1
363
Tumor
0.1
188
Normal
0.1
492
Normal
0.1
778
Normal
0.1
258
Normal
0.1
666
Normal
0.1
662
Normal
0.1
272
Normal
0.0
218
Normal
0.0
966
Normal
0.0
816
Normal
0.0
445
Tumor
0.0
114
Normal
0.0
464
Normal
0.0
443
Tumor
0.0
641
Tumor
0.0
851
Tumor
0.0
975
Tumor
0.0
553
Tumor
0.0
396
Normal
0.0
498
Normal
0.0
146
Normal
0.0
384
Normal
0.0
461
Tumor
0.0
362
Normal
0.0
386
Normal
0.0
268
Normal
0.0
111
Normal
0.0
312
Normal
0.0
497
Tumor
0.0
262
Normal
0.0
383
Tumor
0.0
1015
Tumor
0.0
952
Normal
0.0
857
Tumor
0.0
536
Normal
0.0
435
Tumor
0.0
223
Tumor
-0.1
785
Tumor
-0.1
136
Normal
-0.1
481
Tumor
-0.1
393
Tumor
-0.1
126
Normal
-0.1
434
Normal
-0.1
213
Tumor
-0.1
385
Tumor
-0.1
813
Tumor
-0.1
957
Tumor
-0.1
112
Tumor
-0.1
487
Tumor
-0.1
953
Tumor
-0.1
124
Normal
-0.1
665
Tumor
-0.1
483
Tumor
-0.1
456
Normal
-0.1
185
Tumor
-0.1
865
Tumor
-0.1
427
Tumor
-0.2
195
Tumor
-0.2
477
Tumor
-0.2
963
Tumor
-0.2
916
Normal
-0.2
444
Normal
-0.2
421
Tumor
-0.2
465
Tumor
-0.2
473
Tumor
-0.2
192
Normal
-0.2
137
Tumor
-0.2
141
Tumor
-0.2
127
Tumor
-0.2
715
Tumor
-0.2
493
Tumor
-0.2
915
Tumor
-0.2
471
Tumor
-0.2
937
Tumor
-0.2
217
Tumor
-0.2
861
Tumor
-0.2
187
Tumor
-0.3
617
Tumor
-0.3
261
Tumor
-0.3
523
Tumor
-0.3
777
Tumor
-0.3
425
Tumor
-0.3
413
Tumor
-0.3
433
Tumor
-0.3
881
Tumor
-0.3
415
Tumor
-0.3
814
Normal
-0.3
447
Tumor
-0.3
341
Tumor
-0.3
697
Tumor
-0.3
567
Tumor
-0.3
455
Tumor
-0.4
535
Tumor
-0.4
573
Tumor
-0.4
737
Tumor
-0.4
1031
Tumor
-0.4
527
Tumor
-0.4
285
Tumor
-0.4
297
Tumor
-0.4
537
Tumor
-0.4
387
Tumor
-0.4
271
Tumor
-0.4
943
Tumor
-0.4
491
Tumor
-0.4
517
Tumor
-0.4
467
Tumor
-0.4
1025
Tumor
-0.4
367
Tumor
-0.4
277
Tumor
-0.4
817
Tumor
-0.5
451
Tumor
-0.5
743
Tumor
-0.5
525
Tumor
-0.5
923
Tumor
-0.5
913
Tumor
-0.5
663
Tumor
-0.5
977
Tumor
-0.6
463
Tumor
-0.6
353
Tumor
-0.6
131
Tumor
-0.6
113
Tumor
-0.6
877
Tumor
-0.6
161
Tumor
-0.6
171
Tumor
-0.6
355
Tumor
-0.6
1021
Tumor
-0.7
343
Tumor
-0.7
921
Tumor
-0.7
917
Tumor
-0.7
647
Tumor
-0.7
125
Tumor
-0.7
311
Tumor
-0.7
671
Tumor
-0.7
661
Tumor
-0.7
951
Tumor
-0.8
283
Tumor
-0.8
327
Tumor
-0.8
391
Tumor
-0.8
331
Tumor
-0.8
375
Tumor
-0.8
211
Tumor
-0.8
395
Tumor
-0.9
1013
Tumor
-0.9
724
Normal
-0.9
983
Tumor
-1.0
147
Tumor
-1.0
545
Tumor
-1.0
351
Tumor
-1.1
965
Tumor
-1.1
123
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.