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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACOT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
43.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
221.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
176.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
166.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
151.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
146.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
144.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
133.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
128.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
124.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
113.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
112.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
110.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
108.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
106.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
106.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
102.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
101.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
100.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
95.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
94.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
94.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
90.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
90.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
85.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
84.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
84.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
84.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
83.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
83.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
82.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
82.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
82.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
80.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
78.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
78.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
76.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
75.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
74.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
74.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
74.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
74.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
73.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
72.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
71.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
71.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
70.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
70.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
69.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
69.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
69.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
69.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
68.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
68.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
67.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
67.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
66.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
65.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
64.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
64.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
64.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
64.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
64.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
63.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
63.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
63.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
62.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
62.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
62.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
62.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
62.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
61.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
61.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
61.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
61.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
60.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
60.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
59.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
59.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
58.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
58.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
58.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
58.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
57.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
57.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
57.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
56.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
56.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
56.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
56.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
55.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
55.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
55.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
55.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
54.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
54.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
53.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
53.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
53.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
53.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
52.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
52.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
52.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
52.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
52.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
52.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
52.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
51.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
51.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
51.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
51.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
50.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
50.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
50.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
50.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
50.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
49.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
49.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
49.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
49.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
49.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
49.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
49.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
48.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
48.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
48.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
47.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
47.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
47.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
47.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
47.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
47.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
47.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
47.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
47.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
47.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
46.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
46.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
46.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
45.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
45.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
45.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
45.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
44.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
44.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
44.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
44.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
43.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
43.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
43.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
42.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
42.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
42.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
42.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
42.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
41.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
41.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
41.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
40.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
40.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
40.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
40.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
39.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
39.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
39.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
39.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
39.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
38.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
38.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
37.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
37.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
37.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
37.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
37.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
36.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
36.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
35.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
35.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
35.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
35.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
35.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
35.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
35.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
34.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
34.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
34.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
33.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
33.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
33.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
33.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
33.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
33.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
32.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
32.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
32.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
32.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
31.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
31.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
31.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
30.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
30.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
30.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
29.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
29.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
29.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
28.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
27.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
27.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
27.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
27.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
26.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
25.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
25.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
24.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
24.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
24.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
24.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
23.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
22.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
21.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
21.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
21.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
21.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
20.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
20.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
19.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
19.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
18.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
18.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
17.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
17.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
17.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
17.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
16.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
15.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
14.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
14.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
13.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
12.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
9.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
8.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACOT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.6
Number of samples
231
Samples
Sample
Description
TPM
DO48672
0 years, male, NA, stage:2, alive, 450 days
48.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
46.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
42.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
37.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
34.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
30.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
27.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
27.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
27.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
25.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
24.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
21.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
19.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
18.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
18.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
16.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
15.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
15.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
13.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
12.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
12.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
11.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
10.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
7.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
7.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
6.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
5.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
5.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
4.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.7
786
Normal
1.0
272
Normal
0.9
452
Normal
0.9
196
Normal
0.9
746
Normal
0.9
882
Normal
0.9
1027
Tumor
0.8
428
Normal
0.8
868
Normal
0.8
388
Normal
0.8
132
Normal
0.8
313
Tumor
0.7
222
Normal
0.7
534
Normal
0.7
426
Normal
0.7
488
Normal
0.7
314
Normal
0.7
695
Tumor
0.7
572
Normal
0.7
513
Tumor
0.7
1026
Normal
0.6
114
Normal
0.6
867
Tumor
0.6
664
Normal
0.6
376
Normal
0.6
186
Normal
0.6
384
Normal
0.6
145
Tumor
0.6
968
Normal
0.6
878
Normal
0.6
738
Normal
0.6
866
Normal
0.5
446
Normal
0.5
344
Normal
0.5
128
Normal
0.5
1044
Normal
0.5
533
Tumor
0.5
685
Tumor
0.5
662
Normal
0.5
227
Tumor
0.5
1016
Normal
0.5
362
Normal
0.5
628
Normal
0.5
571
Tumor
0.5
356
Normal
0.5
698
Normal
0.5
392
Normal
0.4
146
Normal
0.4
368
Normal
0.4
361
Tumor
0.4
686
Normal
0.4
358
Normal
0.4
424
Normal
0.4
357
Tumor
0.4
742
Normal
0.4
228
Normal
0.4
874
Normal
0.4
328
Normal
0.4
354
Normal
0.4
414
Normal
0.4
918
Normal
0.4
436
Normal
0.3
142
Normal
0.3
127
Tumor
0.3
741
Tumor
0.3
278
Normal
0.3
563
Tumor
0.3
1032
Normal
0.3
1015
Tumor
0.3
464
Normal
0.3
342
Normal
0.3
423
Tumor
0.3
618
Normal
0.3
162
Normal
0.3
568
Normal
0.3
981
Tumor
0.3
564
Normal
0.3
824
Normal
0.3
258
Normal
0.3
982
Normal
0.3
745
Tumor
0.3
422
Normal
0.3
873
Tumor
0.3
394
Normal
0.3
514
Normal
0.3
1022
Normal
0.3
286
Normal
0.3
136
Normal
0.3
445
Tumor
0.3
1041
Tumor
0.3
443
Tumor
0.3
126
Normal
0.2
616
Normal
0.2
912
Normal
0.2
366
Normal
0.2
648
Normal
0.2
462
Normal
0.2
636
Normal
0.2
261
Tumor
0.2
978
Normal
0.2
864
Normal
0.2
944
Normal
0.2
862
Normal
0.2
432
Normal
0.2
557
Tumor
0.2
214
Normal
0.2
818
Normal
0.2
964
Normal
0.2
412
Normal
0.2
785
Tumor
0.2
232
Normal
0.2
111
Normal
0.2
546
Normal
0.2
416
Normal
0.2
714
Normal
0.2
696
Normal
0.2
914
Normal
0.1
518
Normal
0.1
642
Normal
0.1
528
Normal
0.1
185
Tumor
0.1
716
Normal
0.1
413
Tumor
0.1
448
Normal
0.1
723
Tumor
0.1
722
Normal
0.1
267
Tumor
0.1
756
Normal
0.1
332
Normal
0.1
444
Normal
0.1
911
Tumor
0.1
487
Tumor
0.1
984
Normal
0.1
858
Normal
0.1
715
Tumor
0.1
666
Normal
0.1
482
Normal
0.1
484
Normal
0.1
1014
Normal
0.1
262
Normal
0.1
515
Tumor
0.1
1046
Normal
0.1
138
Normal
0.1
298
Normal
0.1
365
Tumor
0.1
952
Normal
0.1
523
Tumor
0.1
494
Normal
0.1
456
Normal
0.1
172
Normal
0.0
312
Normal
0.0
852
Normal
0.0
148
Normal
0.0
925
Tumor
0.0
922
Normal
0.0
926
Normal
0.0
474
Normal
0.0
352
Normal
0.0
396
Normal
0.0
744
Normal
0.0
884
Normal
0.0
218
Normal
0.0
816
Normal
0.0
195
Tumor
0.0
976
Normal
0.0
477
Tumor
0.0
558
Normal
0.0
778
Normal
0.0
113
Tumor
0.0
526
Normal
0.0
472
Normal
0.0
672
Normal
0.0
635
Tumor
0.0
364
Normal
0.0
231
Tumor
0.0
728
Normal
0.0
271
Tumor
0.0
212
Normal
0.0
938
Normal
0.0
1043
Tumor
0.0
391
Tumor
-0.1
663
Tumor
-0.1
466
Normal
-0.1
421
Tumor
-0.1
434
Normal
-0.1
953
Tumor
-0.1
574
Normal
-0.1
221
Tumor
-0.1
435
Tumor
-0.1
881
Tumor
-0.1
517
Tumor
-0.1
1045
Tumor
-0.1
524
Normal
-0.1
468
Normal
-0.1
483
Tumor
-0.1
188
Normal
-0.1
112
Tumor
-0.1
433
Tumor
-0.1
461
Tumor
-0.1
554
Normal
-0.1
284
Normal
-0.1
493
Tumor
-0.1
815
Tumor
-0.1
427
Tumor
-0.1
1042
Normal
-0.2
431
Tumor
-0.2
1028
Normal
-0.2
383
Tumor
-0.2
956
Normal
-0.2
141
Tumor
-0.2
955
Tumor
-0.2
615
Tumor
-0.2
915
Tumor
-0.2
124
Normal
-0.2
387
Tumor
-0.2
386
Normal
-0.2
363
Tumor
-0.2
966
Normal
-0.2
954
Normal
-0.2
268
Normal
-0.2
224
Normal
-0.2
865
Tumor
-0.2
857
Tumor
-0.2
516
Normal
-0.2
721
Tumor
-0.2
471
Tumor
-0.3
481
Tumor
-0.3
455
Tumor
-0.3
353
Tumor
-0.3
665
Tumor
-0.3
967
Tumor
-0.3
924
Normal
-0.3
823
Tumor
-0.3
958
Normal
-0.3
538
Normal
-0.3
527
Tumor
-0.3
137
Tumor
-0.3
465
Tumor
-0.3
883
Tumor
-0.3
727
Tumor
-0.4
192
Normal
-0.4
863
Tumor
-0.4
737
Tumor
-0.4
916
Normal
-0.4
131
Tumor
-0.4
913
Tumor
-0.4
187
Tumor
-0.4
713
Tumor
-0.4
393
Tumor
-0.4
367
Tumor
-0.4
341
Tumor
-0.5
411
Tumor
-0.5
641
Tumor
-0.5
498
Normal
-0.5
217
Tumor
-0.5
492
Normal
-0.5
478
Normal
-0.5
975
Tumor
-0.5
777
Tumor
-0.5
977
Tumor
-0.6
135
Tumor
-0.6
617
Tumor
-0.6
755
Tumor
-0.6
191
Tumor
-0.6
553
Tumor
-0.6
257
Tumor
-0.6
297
Tumor
-0.6
877
Tumor
-0.6
213
Tumor
-0.6
415
Tumor
-0.6
957
Tumor
-0.7
451
Tumor
-0.7
125
Tumor
-0.7
375
Tumor
-0.7
473
Tumor
-0.7
161
Tumor
-0.8
463
Tumor
-0.8
425
Tumor
-0.8
537
Tumor
-0.8
567
Tumor
-0.8
851
Tumor
-0.8
536
Normal
-0.9
491
Tumor
-0.9
917
Tumor
-0.9
861
Tumor
-0.9
497
Tumor
-0.9
343
Tumor
-0.9
1031
Tumor
-0.9
223
Tumor
-0.9
447
Tumor
-0.9
814
Normal
-0.9
943
Tumor
-0.9
147
Tumor
-1.0
963
Tumor
-1.0
921
Tumor
-1.0
327
Tumor
-1.0
277
Tumor
-1.0
355
Tumor
-1.0
671
Tumor
-1.0
813
Tumor
-1.0
743
Tumor
-1.1
467
Tumor
-1.1
285
Tumor
-1.1
937
Tumor
-1.1
331
Tumor
-1.1
1025
Tumor
-1.1
171
Tumor
-1.1
1013
Tumor
-1.2
311
Tumor
-1.2
1021
Tumor
-1.2
647
Tumor
-1.2
123
Tumor
-1.2
525
Tumor
-1.2
697
Tumor
-1.3
385
Tumor
-1.3
951
Tumor
-1.3
351
Tumor
-1.3
923
Tumor
-1.4
395
Tumor
-1.4
817
Tumor
-1.4
983
Tumor
-1.4
724
Normal
-1.5
573
Tumor
-1.5
661
Tumor
-1.5
545
Tumor
-1.6
283
Tumor
-1.6
965
Tumor
-1.6
535
Tumor
-1.7
211
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.