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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEK9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
22.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
15.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
15.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
8.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
8.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
8.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
8.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
6.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
5.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
5.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
5.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
5.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
4.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
4.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
4.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
2.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
2.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
1.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NEK9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.1
Number of samples
231
Samples
Sample
Description
TPM
DO48757
0 years, female, NA, stage:3, alive, 480 days
37.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
31.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
30.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
27.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
24.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
24.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
23.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
23.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
22.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
22.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
21.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
21.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
21.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
21.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
20.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
20.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
20.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
20.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
19.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
19.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
19.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
19.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
19.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
19.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
18.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
18.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
17.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
17.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
17.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
15.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
15.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
14.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
14.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
14.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
13.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
13.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
10.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
9.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
1.2
131
Tumor
0.7
685
Tumor
0.7
967
Tumor
0.7
523
Tumor
0.7
473
Tumor
0.7
1043
Tumor
0.6
515
Tumor
0.5
1027
Tumor
0.5
981
Tumor
0.5
863
Tumor
0.5
727
Tumor
0.5
261
Tumor
0.5
745
Tumor
0.5
977
Tumor
0.5
865
Tumor
0.5
975
Tumor
0.5
715
Tumor
0.5
411
Tumor
0.5
357
Tumor
0.4
743
Tumor
0.4
497
Tumor
0.4
137
Tumor
0.4
1015
Tumor
0.4
777
Tumor
0.4
785
Tumor
0.4
313
Tumor
0.4
861
Tumor
0.4
867
Tumor
0.4
527
Tumor
0.4
257
Tumor
0.3
741
Tumor
0.3
285
Tumor
0.3
963
Tumor
0.3
431
Tumor
0.3
283
Tumor
0.3
423
Tumor
0.3
141
Tumor
0.2
277
Tumor
0.2
737
Tumor
0.2
471
Tumor
0.2
271
Tumor
0.2
461
Tumor
0.2
553
Tumor
0.2
813
Tumor
0.2
393
Tumor
0.2
455
Tumor
0.2
943
Tumor
0.2
365
Tumor
0.2
463
Tumor
0.2
231
Tumor
0.2
881
Tumor
0.2
955
Tumor
0.1
817
Tumor
0.1
952
Normal
0.1
221
Tumor
0.1
627
Tumor
0.1
493
Tumor
0.1
213
Tumor
0.1
966
Normal
0.1
363
Tumor
0.1
435
Tumor
0.1
188
Normal
0.1
513
Tumor
0.1
635
Tumor
0.1
162
Normal
0.1
142
Normal
0.1
953
Tumor
0.1
536
Normal
0.1
185
Tumor
0.1
746
Normal
0.1
412
Normal
0.1
262
Normal
0.1
416
Normal
0.1
135
Tumor
0.0
641
Tumor
0.0
492
Normal
0.0
172
Normal
0.0
138
Normal
0.0
924
Normal
0.0
478
Normal
0.0
136
Normal
0.0
286
Normal
0.0
617
Tumor
0.0
518
Normal
0.0
195
Tumor
0.0
755
Tumor
0.0
671
Tumor
0.0
778
Normal
0.0
965
Tumor
0.0
446
Normal
0.0
482
Normal
0.0
186
Normal
0.0
223
Tumor
0.0
364
Normal
0.0
284
Normal
0.0
557
Tumor
0.0
956
Normal
0.0
744
Normal
0.0
554
Normal
0.0
432
Normal
0.0
148
Normal
0.0
298
Normal
0.0
267
Tumor
0.0
268
Normal
0.0
665
Tumor
0.0
862
Normal
0.0
394
Normal
0.0
297
Tumor
0.0
864
Normal
0.0
474
Normal
0.0
882
Normal
0.0
696
Normal
0.0
436
Normal
0.0
386
Normal
0.0
816
Normal
0.0
472
Normal
0.0
224
Normal
0.0
361
Tumor
0.0
724
Normal
0.0
873
Tumor
0.0
444
Normal
0.0
874
Normal
0.0
878
Normal
0.0
538
Normal
0.0
714
Normal
0.0
814
Normal
0.0
214
Normal
0.0
563
Tumor
0.0
481
Tumor
0.0
146
Normal
0.0
535
Tumor
0.0
815
Tumor
0.0
738
Normal
0.0
462
Normal
0.0
434
Normal
0.0
567
Tumor
0.0
272
Normal
0.0
516
Normal
0.0
111
Normal
0.0
456
Normal
0.0
132
Normal
0.0
392
Normal
0.0
912
Normal
0.0
187
Tumor
0.0
1045
Tumor
0.0
222
Normal
0.0
938
Normal
0.0
192
Normal
0.0
866
Normal
-0.1
558
Normal
-0.1
868
Normal
-0.1
968
Normal
-0.1
218
Normal
-0.1
196
Normal
-0.1
982
Normal
-0.1
533
Tumor
-0.1
664
Normal
-0.1
858
Normal
-0.1
258
Normal
-0.1
918
Normal
-0.1
484
Normal
-0.1
433
Tumor
-0.1
147
Tumor
-0.1
128
Normal
-0.1
232
Normal
-0.1
713
Tumor
-0.1
615
Tumor
-0.1
366
Normal
-0.1
498
Normal
-0.1
823
Tumor
-0.1
618
Normal
-0.1
742
Normal
-0.1
488
Normal
-0.1
524
Normal
-0.1
127
Tumor
-0.1
413
Tumor
-0.1
728
Normal
-0.1
212
Normal
-0.1
976
Normal
-0.1
278
Normal
-0.1
114
Normal
-0.1
964
Normal
-0.1
443
Tumor
-0.1
1022
Normal
-0.1
358
Normal
-0.1
528
Normal
-0.1
422
Normal
-0.1
642
Normal
-0.1
1044
Normal
-0.1
663
Tumor
-0.1
228
Normal
-0.1
957
Tumor
-0.1
852
Normal
-0.1
926
Normal
-0.1
312
Normal
-0.1
1016
Normal
-0.1
914
Normal
-0.1
466
Normal
-0.1
698
Normal
-0.1
452
Normal
-0.1
824
Normal
-0.1
1026
Normal
-0.1
356
Normal
-0.1
574
Normal
-0.1
546
Normal
-0.1
917
Tumor
-0.1
628
Normal
-0.1
517
Tumor
-0.1
217
Tumor
-0.1
126
Normal
-0.1
328
Normal
-0.1
716
Normal
-0.1
723
Tumor
-0.1
534
Normal
-0.1
526
Normal
-0.1
355
Tumor
-0.1
426
Normal
-0.1
884
Normal
-0.1
124
Normal
-0.1
125
Tumor
-0.1
954
Normal
-0.1
662
Normal
-0.1
877
Tumor
-0.1
572
Normal
-0.1
362
Normal
-0.1
922
Normal
-0.1
332
Normal
-0.1
911
Tumor
-0.1
447
Tumor
-0.1
1014
Normal
-0.1
616
Normal
-0.1
342
Normal
-0.1
353
Tumor
-0.1
661
Tumor
-0.1
448
Normal
-0.1
311
Tumor
-0.1
477
Tumor
-0.1
388
Normal
-0.1
376
Normal
-0.1
494
Normal
-0.1
1028
Normal
-0.1
958
Normal
-0.1
636
Normal
-0.1
915
Tumor
-0.1
112
Tumor
-0.2
883
Tumor
-0.2
857
Tumor
-0.2
1021
Tumor
-0.2
314
Normal
-0.2
648
Normal
-0.2
818
Normal
-0.2
666
Normal
-0.2
384
Normal
-0.2
467
Tumor
-0.2
468
Normal
-0.2
984
Normal
-0.2
428
Normal
-0.2
424
Normal
-0.2
383
Tumor
-0.2
367
Tumor
-0.2
514
Normal
-0.2
1013
Tumor
-0.2
697
Tumor
-0.2
1042
Normal
-0.2
171
Tumor
-0.2
916
Normal
-0.2
344
Normal
-0.2
1046
Normal
-0.2
464
Normal
-0.2
191
Tumor
-0.2
414
Normal
-0.2
756
Normal
-0.2
568
Normal
-0.2
921
Tumor
-0.2
415
Tumor
-0.2
786
Normal
-0.2
396
Normal
-0.2
944
Normal
-0.2
686
Normal
-0.2
375
Tumor
-0.2
978
Normal
-0.2
721
Tumor
-0.2
352
Normal
-0.2
545
Tumor
-0.2
211
Tumor
-0.2
343
Tumor
-0.2
368
Normal
-0.2
354
Normal
-0.2
1041
Tumor
-0.2
1031
Tumor
-0.3
491
Tumor
-0.3
851
Tumor
-0.3
564
Normal
-0.3
161
Tumor
-0.3
983
Tumor
-0.3
722
Normal
-0.3
537
Tumor
-0.3
421
Tumor
-0.3
227
Tumor
-0.3
1032
Normal
-0.3
483
Tumor
-0.3
925
Tumor
-0.3
385
Tumor
-0.3
391
Tumor
-0.3
695
Tumor
-0.4
465
Tumor
-0.4
672
Normal
-0.4
913
Tumor
-0.4
573
Tumor
-0.4
425
Tumor
-0.4
951
Tumor
-0.4
145
Tumor
-0.4
387
Tumor
-0.4
451
Tumor
-0.4
341
Tumor
-0.5
571
Tumor
-0.5
923
Tumor
-0.5
647
Tumor
-0.5
487
Tumor
-0.5
327
Tumor
-0.5
113
Tumor
-0.5
123
Tumor
-0.6
937
Tumor
-0.6
427
Tumor
-0.6
351
Tumor
-0.6
331
Tumor
-0.6
1025
Tumor
-0.7
395
Tumor
-0.7
525
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
