MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.2 nTPM
HPA Brain:13.0 nTPM
GTEx:2.2 nTPM
FANTOM5:57.4 Scaled Tags Per Million
Pig:25.0 nTPM
Mouse:24.8 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 13.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
1870 Female, age 42, unknown 12.7
2666 Male, age 74, left hemisphere 12.0
2828 Female, age 72, unknown 11.9
2411 Female, age 72, unknown 11.8
2019 Male, age 18, unknown 11.5
1830 Male, age 51, unknown 10.7
1833 Male, age 53, unknown 10.4
2586 Male, age 75, left hemisphere 10.3
1827 Male, age 72, unknown 9.6
2219 Male, age 76, both hemispheres 9.1
Dorsal raphe nucleus
nTPM: 13.0
2016 Female, age 72, unknown 13.9
2298 Female, age 72, unknown 13.5
2047 Male, age 72, unknown 13.4
1828 Male, age 53, unknown 12.9
2750 Male, age 76, both hemispheres 11.2
Inferior colliculus
nTPM: 11.2
1890 Male, age 53, unknown 12.0
1848 Female, age 42, unknown 11.4
2097 Female, age 72, unknown 10.8
2849 Male, age 72, unknown 10.4
Median raphe nucleus
nTPM: 9.4
2220 Male, age 76, midline 9.4
Periaquaductal grey, anterior
nTPM: 11.4
1947 Male, age 18, unknown 12.7
2502 Female, age 75, unknown 11.9
1795 Male, age 51, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 12.9
1840 Male, age 53, unknown 15.0
2464 Female, age 72, unknown 12.7
2850 Male, age 76, both hemispheres 12.2
1831 Male, age 72, unknown 11.9
Periaquaductal grey, lateral
nTPM: 11.9
2053 Male, age 18, unknown 13.4
2140 Male, age 76, both hemispheres 12.8
2272 Male, age 74, both hemispheres 9.5
Pretectal area
nTPM: 10.8
2316 Male, age 76, right hemisphere 13.3
2825 Male, age 18, unknown 12.3
2273 Male, age 74, both hemispheres 11.5
2407 Male, age 75, both hemispheres 11.5
2224 Female, age 72, unknown 10.8
1816 Male, age 51, unknown 10.6
2667 Female, age 75, unknown 10.2
2007 Male, age 72, unknown 10.1
1815 Male, age 53, unknown 9.9
1817 Female, age 42, unknown 9.8
1944 Female, age 72, unknown 8.8
Red nucleus
nTPM: 12.1
2503 Female, age 72, unknown 15.6
1865 Male, age 51, unknown 14.3
1821 Female, age 72, unknown 13.7
1954 Female, age 42, unknown 13.4
1904 Male, age 53, unknown 12.9
2227 Male, age 72, unknown 12.6
2588 Male, age 74, left hemisphere 11.4
2725 Female, age 75, unknown 11.1
2769 Male, age 72, unknown 11.0
2823 Male, age 76, right hemisphere 10.3
2584 Male, age 75, left hemisphere 9.8
2785 Male, age 18, unknown 8.9
Substantia nigra
nTPM: 12.0
2241 Male, age 72, unknown 15.3
1851 Male, age 51, unknown 13.6
2590 Female, age 75, unknown 12.6
2583 Male, age 75, right hemisphere 12.4
2699 Male, age 18, unknown 12.2
1916 Female, age 42, unknown 11.8
2665 Male, age 74, both hemispheres 11.5
1889 Female, age 72, unknown 10.9
1941 Male, age 53, unknown 10.2
2409 Female, age 72, unknown 9.9
Superior colliculus
nTPM: 10.5
1895 Male, age 76, right hemisphere 13.5
1913 Female, age 42, unknown 11.5
1995 Male, age 72, unknown 11.3
2587 Male, age 74, left hemisphere 10.9
2668 Female, age 75, unknown 10.7
1796 Male, age 53, unknown 10.0
2664 Male, age 75, both hemispheres 9.7
2087 Female, age 72, unknown 9.4
1839 Male, age 51, unknown 9.3
2261 Male, age 18, unknown 9.0
Ventral tegmental area
nTPM: 11.4
1915 Female, age 42, unknown 12.5
2021 Male, age 53, unknown 11.8
2410 Female, age 72, unknown 11.6
1942 Male, age 51, unknown 11.5
2223 Female, age 72, unknown 11.0
2218 Male, age 76, both hemispheres 10.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.2
Samples: 139

Max nTPM: 5.3
Min nTPM: 0.8
Std nTPM: 0.7
Median nTPM: 2.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 5.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 4.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 4.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 4.0
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 3.7
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 3.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 3.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 3.3
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 3.3
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 3.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 3.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.4
FF:10158-103A5 76 years, female 57.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 25.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.1
Samples: 4

Max nTPM: 27.8
Min nTPM: 22.6
Sample A Female 26.5
Sample B Female 27.8
Sample C Male 22.6
Sample D Male 23.3
Midbrain
nTPM: 23.9
Samples: 4

Max nTPM: 35.1
Min nTPM: 16.5
Sample A Female 35.1
Sample B Female 23.5
Sample C Male 20.5
Sample D Male 16.5
Periaqueductal gray
nTPM: 22.4
Samples: 3

Max nTPM: 23.7
Min nTPM: 20.3
Sample B Female 23.7
Sample C Male 23.2
Sample D Male 20.3
Superior colliculi
nTPM: 23.4
Samples: 4

Max nTPM: 28.1
Min nTPM: 19.3
Sample A Female 24.9
Sample B Female 28.1
Sample C Male 21.3
Sample D Male 19.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 25.7
Min nTPM: 24.1
Sample A Male 25.7
Sample B Male 24.7
Sample C Female 24.7
Sample D Female 24.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
70546269 Antisense, RP_050623_03_H08, Mouse strain C57BL/6J (56 days, male) 0.9

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