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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDHD3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
44.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
117.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
115.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
109.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
106.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
105.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
103.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
100.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
99.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
98.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
98.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
97.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
96.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
91.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
85.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
84.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
83.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
82.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
80.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
79.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
78.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
77.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
76.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
75.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
74.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
73.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
72.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
72.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
72.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
71.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
71.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
70.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
70.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
70.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
69.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
69.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
69.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
68.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
68.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
67.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
67.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
67.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
67.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
67.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
66.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
65.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
64.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
64.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
64.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
64.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
63.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
63.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
63.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
62.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
62.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
62.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
62.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
61.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
61.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
60.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
60.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
59.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
59.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
59.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
59.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
59.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
58.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
58.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
58.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
58.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
58.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
57.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
57.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
56.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
56.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
56.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
56.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
55.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
55.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
55.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
55.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
55.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
55.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
55.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
54.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
54.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
54.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
54.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
54.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
54.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
54.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
54.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
53.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
53.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
53.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
52.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
52.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
52.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
52.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
51.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
51.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
51.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
51.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
51.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
51.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
51.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
50.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
50.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
50.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
49.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
49.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
49.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
49.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
49.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
48.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
48.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
48.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
48.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
48.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
48.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
48.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
48.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
47.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
47.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
47.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
47.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
47.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
47.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
47.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
47.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
47.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
46.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
46.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
46.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
46.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
46.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
46.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
45.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
45.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
45.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
45.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
45.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
45.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
45.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
44.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
44.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
44.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
44.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
44.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
44.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
44.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
43.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
43.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
43.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
43.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
43.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
43.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
43.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
43.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
43.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
43.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
42.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
42.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
42.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
42.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
42.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
42.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
42.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
41.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
41.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
41.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
41.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
41.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
41.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
41.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
41.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
41.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
41.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
40.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
40.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
40.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
39.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
39.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
39.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
39.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
39.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
38.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
38.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
38.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
37.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
37.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
37.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
36.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
36.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
36.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
36.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
36.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
36.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
36.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
36.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
36.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
35.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
35.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
35.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
35.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
35.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
35.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
34.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
34.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
33.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
33.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
33.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
33.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
33.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
33.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
33.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
33.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
32.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
32.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
32.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
32.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
32.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
32.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
32.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
32.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
32.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
31.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
31.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
31.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
31.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
30.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
30.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
30.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
30.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
30.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
29.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
29.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
29.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
29.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
29.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
28.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
27.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
27.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
26.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
26.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
26.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
26.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
26.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
25.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
25.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
25.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
25.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
24.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
24.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
23.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
23.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
23.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
23.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
22.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
22.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
21.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
20.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
19.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
19.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
18.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
16.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
13.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
9.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
HDHD3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.3
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
121.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
113.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
112.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
104.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
97.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
92.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
87.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
83.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
74.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
74.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
73.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
70.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
68.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
67.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
66.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
63.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
62.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
61.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
60.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
60.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
60.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
60.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
60.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
59.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
58.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
58.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
57.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
57.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
56.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
55.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
54.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
54.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
53.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
53.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
53.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
52.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
52.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
52.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
51.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
50.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
50.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
49.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
49.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
49.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
48.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
48.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
47.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
46.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
45.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
45.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
45.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
44.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
44.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
44.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
44.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
42.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
42.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
42.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
42.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
42.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
42.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
41.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
41.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
41.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
41.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
40.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
40.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
40.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
40.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
40.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
40.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
40.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
39.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
39.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
38.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
38.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
37.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
37.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
37.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
37.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
37.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
36.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
36.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
35.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
35.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
35.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
35.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
34.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
33.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
33.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
33.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
33.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
32.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
32.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
32.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
31.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
31.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
30.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
29.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
29.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
29.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
29.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
28.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
28.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
26.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
26.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
26.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
25.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
25.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
25.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
25.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
24.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
24.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
24.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
24.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
23.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
23.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
23.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
23.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
22.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
22.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
22.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
21.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
21.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
21.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
18.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
18.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
18.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
17.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
15.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
13.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.9
465
Tumor
1.2
741
Tumor
1.0
911
Tumor
1.0
435
Tumor
0.9
695
Tumor
0.8
1041
Tumor
0.8
127
Tumor
0.7
715
Tumor
0.7
571
Tumor
0.7
915
Tumor
0.7
423
Tumor
0.7
742
Normal
0.7
618
Normal
0.7
615
Tumor
0.7
452
Normal
0.7
341
Tumor
0.6
342
Normal
0.6
186
Normal
0.6
464
Normal
0.6
436
Normal
0.6
171
Tumor
0.6
132
Normal
0.6
648
Normal
0.5
365
Tumor
0.5
424
Normal
0.5
428
Normal
0.5
394
Normal
0.5
112
Tumor
0.5
393
Tumor
0.5
111
Normal
0.5
426
Normal
0.5
114
Normal
0.5
466
Normal
0.5
868
Normal
0.5
354
Normal
0.5
358
Normal
0.5
388
Normal
0.5
172
Normal
0.5
744
Normal
0.5
332
Normal
0.5
641
Tumor
0.5
884
Normal
0.5
344
Normal
0.5
414
Normal
0.5
867
Tumor
0.5
642
Normal
0.5
231
Tumor
0.5
487
Tumor
0.5
1022
Normal
0.5
756
Normal
0.5
128
Normal
0.4
162
Normal
0.4
628
Normal
0.4
824
Normal
0.4
746
Normal
0.4
664
Normal
0.4
568
Normal
0.4
314
Normal
0.4
451
Tumor
0.4
616
Normal
0.4
392
Normal
0.4
352
Normal
0.4
376
Normal
0.4
723
Tumor
0.4
361
Tumor
0.4
396
Normal
0.4
1043
Tumor
0.4
738
Normal
0.4
477
Tumor
0.4
572
Normal
0.4
278
Normal
0.4
366
Normal
0.4
698
Normal
0.4
422
Normal
0.4
446
Normal
0.4
196
Normal
0.4
666
Normal
0.4
1026
Normal
0.4
432
Normal
0.4
546
Normal
0.4
662
Normal
0.4
356
Normal
0.4
862
Normal
0.4
1016
Normal
0.4
448
Normal
0.4
526
Normal
0.4
786
Normal
0.4
124
Normal
0.3
416
Normal
0.3
922
Normal
0.3
851
Tumor
0.3
482
Normal
0.3
462
Normal
0.3
866
Normal
0.3
818
Normal
0.3
981
Tumor
0.3
145
Tumor
0.3
1046
Normal
0.3
218
Normal
0.3
882
Normal
0.3
513
Tumor
0.3
258
Normal
0.3
113
Tumor
0.3
262
Normal
0.3
267
Tumor
0.3
148
Normal
0.3
456
Normal
0.3
1032
Normal
0.3
534
Normal
0.3
722
Normal
0.3
553
Tumor
0.3
921
Tumor
0.3
874
Normal
0.3
1015
Tumor
0.3
912
Normal
0.3
778
Normal
0.3
298
Normal
0.3
123
Tumor
0.3
714
Normal
0.3
136
Normal
0.3
938
Normal
0.3
232
Normal
0.3
1045
Tumor
0.2
665
Tumor
0.2
468
Normal
0.2
328
Normal
0.2
696
Normal
0.2
472
Normal
0.2
312
Normal
0.2
528
Normal
0.2
146
Normal
0.2
964
Normal
0.2
925
Tumor
0.2
1014
Normal
0.2
222
Normal
0.2
214
Normal
0.2
944
Normal
0.2
878
Normal
0.2
227
Tumor
0.2
924
Normal
0.2
636
Normal
0.2
518
Normal
0.2
976
Normal
0.2
368
Normal
0.2
864
Normal
0.2
138
Normal
0.2
474
Normal
0.2
574
Normal
0.2
1031
Tumor
0.2
364
Normal
0.2
286
Normal
0.2
858
Normal
0.2
362
Normal
0.2
564
Normal
0.2
914
Normal
0.2
386
Normal
0.2
852
Normal
0.2
952
Normal
0.2
142
Normal
0.2
918
Normal
0.2
755
Tumor
0.2
982
Normal
0.2
554
Normal
0.2
558
Normal
0.1
412
Normal
0.1
557
Tumor
0.1
745
Tumor
0.1
954
Normal
0.1
268
Normal
0.1
716
Normal
0.1
1028
Normal
0.1
411
Tumor
0.1
963
Tumor
0.1
257
Tumor
0.1
141
Tumor
0.1
873
Tumor
0.1
672
Normal
0.1
384
Normal
0.1
686
Normal
0.1
955
Tumor
0.1
161
Tumor
0.1
958
Normal
0.1
926
Normal
0.1
728
Normal
0.1
968
Normal
0.1
1044
Normal
0.1
434
Normal
0.1
484
Normal
0.1
514
Normal
0.1
538
Normal
0.1
937
Tumor
0.1
272
Normal
0.1
984
Normal
0.1
494
Normal
0.1
488
Normal
0.0
126
Normal
0.0
433
Tumor
0.0
1042
Normal
0.0
861
Tumor
0.0
481
Tumor
0.0
353
Tumor
0.0
391
Tumor
0.0
966
Normal
0.0
916
Normal
0.0
956
Normal
0.0
221
Tumor
0.0
1025
Tumor
0.0
785
Tumor
0.0
816
Normal
0.0
195
Tumor
0.0
978
Normal
0.0
284
Normal
0.0
777
Tumor
0.0
271
Tumor
0.0
188
Normal
0.0
721
Tumor
0.0
1027
Tumor
0.0
444
Normal
0.0
515
Tumor
0.0
483
Tumor
0.0
516
Normal
0.0
517
Tumor
0.0
563
Tumor
0.0
977
Tumor
-0.1
857
Tumor
-0.1
478
Normal
-0.1
212
Normal
-0.1
261
Tumor
-0.1
357
Tumor
-0.1
913
Tumor
-0.1
224
Normal
-0.1
137
Tumor
-0.1
228
Normal
-0.1
492
Normal
-0.1
863
Tumor
-0.1
883
Tumor
-0.1
192
Normal
-0.1
277
Tumor
-0.1
524
Normal
-0.1
525
Tumor
-0.1
647
Tumor
-0.1
617
Tumor
-0.1
967
Tumor
-0.1
461
Tumor
-0.1
953
Tumor
-0.1
1013
Tumor
-0.1
415
Tumor
-0.1
217
Tumor
-0.2
363
Tumor
-0.2
533
Tumor
-0.2
445
Tumor
-0.2
443
Tumor
-0.2
823
Tumor
-0.2
663
Tumor
-0.2
383
Tumor
-0.2
471
Tumor
-0.2
187
Tumor
-0.2
537
Tumor
-0.2
671
Tumor
-0.2
865
Tumor
-0.2
135
Tumor
-0.2
185
Tumor
-0.2
147
Tumor
-0.2
957
Tumor
-0.2
131
Tumor
-0.3
327
Tumor
-0.3
573
Tumor
-0.3
493
Tumor
-0.3
975
Tumor
-0.3
536
Normal
-0.3
421
Tumor
-0.3
713
Tumor
-0.3
125
Tumor
-0.3
191
Tumor
-0.3
413
Tumor
-0.3
431
Tumor
-0.3
817
Tumor
-0.4
881
Tumor
-0.4
567
Tumor
-0.4
498
Normal
-0.4
743
Tumor
-0.4
427
Tumor
-0.4
355
Tumor
-0.4
815
Tumor
-0.4
395
Tumor
-0.4
447
Tumor
-0.4
375
Tumor
-0.5
724
Normal
-0.5
965
Tumor
-0.5
463
Tumor
-0.5
727
Tumor
-0.5
367
Tumor
-0.5
923
Tumor
-0.5
737
Tumor
-0.5
951
Tumor
-0.6
387
Tumor
-0.6
313
Tumor
-0.6
223
Tumor
-0.6
685
Tumor
-0.6
814
Normal
-0.6
285
Tumor
-0.6
425
Tumor
-0.6
297
Tumor
-0.6
877
Tumor
-0.6
635
Tumor
-0.6
343
Tumor
-0.6
491
Tumor
-0.7
213
Tumor
-0.7
473
Tumor
-0.7
523
Tumor
-0.7
697
Tumor
-0.7
943
Tumor
-0.7
385
Tumor
-0.8
813
Tumor
-0.8
1021
Tumor
-0.8
331
Tumor
-0.8
983
Tumor
-0.8
535
Tumor
-0.8
455
Tumor
-0.9
351
Tumor
-0.9
545
Tumor
-0.9
497
Tumor
-0.9
283
Tumor
-1.0
917
Tumor
-1.0
527
Tumor
-1.0
467
Tumor
-1.0
311
Tumor
-1.0
661
Tumor
-1.3
211
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
