MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.2 nTPM
HPA Brain:185.6 nTPM
GTEx:98.2 nTPM
FANTOM5:66.0 Scaled Tags Per Million
Pig:89.0 nTPM
Mouse:137.0 nTPM
Allen mouse:11.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 185.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 185.6
2586 Male, age 75, left hemisphere 307.0
2666 Male, age 74, left hemisphere 207.3
1827 Male, age 72, unknown 199.0
2828 Female, age 72, unknown 193.2
2019 Male, age 18, unknown 185.1
2411 Female, age 72, unknown 161.1
1870 Female, age 42, unknown 157.0
2219 Male, age 76, both hemispheres 149.6
1830 Male, age 51, unknown 148.8
1833 Male, age 53, unknown 148.0
Dorsal raphe nucleus
nTPM: 152.2
2047 Male, age 72, unknown 167.2
1828 Male, age 53, unknown 159.6
2298 Female, age 72, unknown 149.3
2750 Male, age 76, both hemispheres 147.7
2016 Female, age 72, unknown 137.3
Inferior colliculus
nTPM: 149.6
1848 Female, age 42, unknown 153.0
1890 Male, age 53, unknown 151.9
2097 Female, age 72, unknown 149.5
2849 Male, age 72, unknown 144.0
Median raphe nucleus
nTPM: 144.6
2220 Male, age 76, midline 144.6
Periaquaductal grey, anterior
nTPM: 181.7
1795 Male, age 51, unknown 190.5
1947 Male, age 18, unknown 190.5
2502 Female, age 75, unknown 164.1
Periaquaductal grey, dorsal
nTPM: 145.5
1831 Male, age 72, unknown 153.6
1840 Male, age 53, unknown 149.1
2464 Female, age 72, unknown 145.2
2850 Male, age 76, both hemispheres 133.9
Periaquaductal grey, lateral
nTPM: 138.9
2053 Male, age 18, unknown 154.4
2140 Male, age 76, both hemispheres 144.7
2272 Male, age 74, both hemispheres 117.8
Pretectal area
nTPM: 182.5
1816 Male, age 51, unknown 239.4
2007 Male, age 72, unknown 228.9
1817 Female, age 42, unknown 219.9
1944 Female, age 72, unknown 212.3
1815 Male, age 53, unknown 196.6
2667 Female, age 75, unknown 177.4
2407 Male, age 75, both hemispheres 168.9
2825 Male, age 18, unknown 154.1
2316 Male, age 76, right hemisphere 152.0
2224 Female, age 72, unknown 139.4
2273 Male, age 74, both hemispheres 118.1
Red nucleus
nTPM: 165.3
2584 Male, age 75, left hemisphere 219.0
2588 Male, age 74, left hemisphere 182.3
2823 Male, age 76, right hemisphere 182.2
2785 Male, age 18, unknown 176.3
2725 Female, age 75, unknown 163.9
1821 Female, age 72, unknown 159.5
2769 Male, age 72, unknown 155.0
1954 Female, age 42, unknown 152.9
1904 Male, age 53, unknown 150.2
1865 Male, age 51, unknown 149.5
2227 Male, age 72, unknown 149.4
2503 Female, age 72, unknown 143.6
Substantia nigra
nTPM: 173.2
2583 Male, age 75, right hemisphere 210.4
2665 Male, age 74, both hemispheres 201.5
1916 Female, age 42, unknown 190.2
1941 Male, age 53, unknown 188.8
1889 Female, age 72, unknown 184.3
1851 Male, age 51, unknown 182.3
2590 Female, age 75, unknown 161.2
2241 Male, age 72, unknown 148.8
2699 Male, age 18, unknown 141.3
2409 Female, age 72, unknown 122.7
Superior colliculus
nTPM: 177.3
2664 Male, age 75, both hemispheres 232.2
2668 Female, age 75, unknown 206.9
2261 Male, age 18, unknown 190.2
2087 Female, age 72, unknown 187.0
1796 Male, age 53, unknown 185.7
1895 Male, age 76, right hemisphere 160.4
1839 Male, age 51, unknown 158.6
1913 Female, age 42, unknown 154.7
2587 Male, age 74, left hemisphere 148.7
1995 Male, age 72, unknown 148.2
Ventral tegmental area
nTPM: 159.2
2410 Female, age 72, unknown 171.4
1915 Female, age 42, unknown 167.0
2218 Male, age 76, both hemispheres 165.8
1942 Male, age 51, unknown 156.0
2021 Male, age 53, unknown 150.5
2223 Female, age 72, unknown 144.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 98.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 98.2
Samples: 139

Max nTPM: 207.1
Min nTPM: 41.0
Std nTPM: 26.6
Median nTPM: 93.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 207.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 191.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 188.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 172.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 167.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 164.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 148.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 145.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 142.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 139.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 131.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 66.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.0
FF:10158-103A5 76 years, female 66.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 89.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.6
Samples: 4

Max nTPM: 85.7
Min nTPM: 55.8
Sample A Female 85.7
Sample B Female 59.6
Sample C Male 65.2
Sample D Male 55.8
Midbrain
nTPM: 80.4
Samples: 4

Max nTPM: 91.0
Min nTPM: 61.0
Sample A Female 88.1
Sample B Female 61.0
Sample C Male 91.0
Sample D Male 81.5
Periaqueductal gray
nTPM: 56.8
Samples: 3

Max nTPM: 61.6
Min nTPM: 51.2
Sample B Female 57.6
Sample C Male 61.6
Sample D Male 51.2
Superior colliculi
nTPM: 89.0
Samples: 4

Max nTPM: 98.9
Min nTPM: 76.0
Sample A Female 98.9
Sample B Female 88.1
Sample C Male 93.1
Sample D Male 76.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 137.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 137.0
Samples: 4

Max nTPM: 149.5
Min nTPM: 128.4
Sample A Male 149.5
Sample B Male 133.9
Sample C Female 128.4
Sample D Female 136.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 11.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 11.0
68668048 Antisense, RP_050203_01_C11, Mouse strain C57BL/6J (56 days, male) 11.0

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