MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.6 nTPM
HPA Brain:16.7 nTPM
GTEx:5.6 nTPM
FANTOM5:46.0 Scaled Tags Per Million
Pig:33.1 nTPM
Mouse:24.1 nTPM
Allen mouse:8.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 16.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.2
2019 Male, age 18, unknown 20.3
2411 Female, age 72, unknown 15.9
2219 Male, age 76, both hemispheres 15.1
2586 Male, age 75, left hemisphere 14.7
1827 Male, age 72, unknown 14.0
1833 Male, age 53, unknown 12.9
1830 Male, age 51, unknown 12.8
1870 Female, age 42, unknown 12.5
2666 Male, age 74, left hemisphere 12.2
2828 Female, age 72, unknown 11.7
Dorsal raphe nucleus
nTPM: 14.8
2298 Female, age 72, unknown 16.6
2047 Male, age 72, unknown 15.6
1828 Male, age 53, unknown 15.2
2750 Male, age 76, both hemispheres 13.7
2016 Female, age 72, unknown 12.8
Inferior colliculus
nTPM: 13.6
1890 Male, age 53, unknown 15.5
2097 Female, age 72, unknown 15.4
1848 Female, age 42, unknown 12.2
2849 Male, age 72, unknown 11.6
Median raphe nucleus
nTPM: 16.5
2220 Male, age 76, midline 16.5
Periaquaductal grey, anterior
nTPM: 14.1
2502 Female, age 75, unknown 14.9
1947 Male, age 18, unknown 14.5
1795 Male, age 51, unknown 12.8
Periaquaductal grey, dorsal
nTPM: 14.0
2850 Male, age 76, both hemispheres 15.3
1831 Male, age 72, unknown 13.8
2464 Female, age 72, unknown 13.5
1840 Male, age 53, unknown 13.3
Periaquaductal grey, lateral
nTPM: 12.1
2140 Male, age 76, both hemispheres 13.0
2272 Male, age 74, both hemispheres 12.3
2053 Male, age 18, unknown 11.1
Pretectal area
nTPM: 16.7
1816 Male, age 51, unknown 22.3
2007 Male, age 72, unknown 22.1
1817 Female, age 42, unknown 21.1
1944 Female, age 72, unknown 19.8
1815 Male, age 53, unknown 19.1
2667 Female, age 75, unknown 14.6
2273 Male, age 74, both hemispheres 14.4
2224 Female, age 72, unknown 14.3
2316 Male, age 76, right hemisphere 12.4
2407 Male, age 75, both hemispheres 12.0
2825 Male, age 18, unknown 11.4
Red nucleus
nTPM: 14.0
2785 Male, age 18, unknown 17.1
1821 Female, age 72, unknown 17.0
2725 Female, age 75, unknown 16.1
1954 Female, age 42, unknown 14.9
2503 Female, age 72, unknown 13.7
1865 Male, age 51, unknown 13.5
1904 Male, age 53, unknown 13.5
2588 Male, age 74, left hemisphere 12.9
2584 Male, age 75, left hemisphere 12.8
2823 Male, age 76, right hemisphere 12.7
2227 Male, age 72, unknown 12.2
2769 Male, age 72, unknown 11.7
Substantia nigra
nTPM: 16.5
1916 Female, age 42, unknown 20.0
2241 Male, age 72, unknown 19.8
1889 Female, age 72, unknown 19.5
1941 Male, age 53, unknown 18.1
2665 Male, age 74, both hemispheres 16.4
1851 Male, age 51, unknown 16.1
2409 Female, age 72, unknown 15.5
2583 Male, age 75, right hemisphere 14.3
2590 Female, age 75, unknown 13.3
2699 Male, age 18, unknown 11.7
Superior colliculus
nTPM: 13.6
2087 Female, age 72, unknown 16.3
2261 Male, age 18, unknown 15.6
2668 Female, age 75, unknown 14.9
2587 Male, age 74, left hemisphere 13.9
1839 Male, age 51, unknown 13.0
1895 Male, age 76, right hemisphere 13.0
1913 Female, age 42, unknown 13.0
1796 Male, age 53, unknown 12.5
1995 Male, age 72, unknown 12.3
2664 Male, age 75, both hemispheres 11.5
Ventral tegmental area
nTPM: 14.6
2410 Female, age 72, unknown 19.5
1915 Female, age 42, unknown 15.0
2218 Male, age 76, both hemispheres 14.2
1942 Male, age 51, unknown 13.6
2223 Female, age 72, unknown 13.5
2021 Male, age 53, unknown 11.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 5.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.6
Samples: 139

Max nTPM: 9.8
Min nTPM: 3.9
Std nTPM: 1.0
Median nTPM: 5.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 9.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 9.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 9.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 8.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 8.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 7.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 7.6
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 7.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 7.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 7.0
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 7.0
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 46.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 46.0
FF:10158-103A5 76 years, female 46.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 33.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.4
Samples: 4

Max nTPM: 32.2
Min nTPM: 21.6
Sample A Female 32.2
Sample B Female 25.4
Sample C Male 30.4
Sample D Male 21.6
Midbrain
nTPM: 31.1
Samples: 4

Max nTPM: 41.0
Min nTPM: 22.3
Sample A Female 22.3
Sample B Female 25.2
Sample C Male 41.0
Sample D Male 35.9
Periaqueductal gray
nTPM: 24.0
Samples: 3

Max nTPM: 26.8
Min nTPM: 21.3
Sample B Female 24.0
Sample C Male 26.8
Sample D Male 21.3
Superior colliculi
nTPM: 33.1
Samples: 4

Max nTPM: 37.8
Min nTPM: 28.6
Sample A Female 35.8
Sample B Female 28.6
Sample C Male 37.8
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 24.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.1
Samples: 4

Max nTPM: 25.7
Min nTPM: 21.4
Sample A Male 21.4
Sample B Male 24.4
Sample C Female 25.7
Sample D Female 24.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.2
69015302 Antisense, RP_050310_02_F10, Mouse strain C57BL/6J (56 days, male) 8.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org