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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STBD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
52.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
168.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
158.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
157.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
146.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
142.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
135.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
133.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
128.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
127.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
126.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
124.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
119.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
119.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
119.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
118.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
118.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
117.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
116.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
116.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
116.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
115.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
115.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
115.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
113.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
113.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
112.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
107.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
107.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
105.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
104.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
102.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
101.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
101.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
101.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
101.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
100.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
99.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
96.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
95.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
95.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
94.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
94.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
94.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
93.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
93.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
91.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
91.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
90.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
90.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
89.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
89.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
88.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
88.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
87.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
86.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
85.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
85.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
84.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
84.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
83.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
82.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
82.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
82.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
81.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
80.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
79.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
79.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
78.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
78.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
77.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
76.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
76.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
76.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
76.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
75.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
75.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
75.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
74.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
74.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
74.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
74.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
74.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
73.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
73.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
72.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
72.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
72.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
71.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
70.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
69.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
69.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
69.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
69.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
69.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
69.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
69.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
68.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
68.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
67.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
67.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
66.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
66.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
66.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
66.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
66.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
66.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
65.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
64.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
64.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
64.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
63.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
63.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
62.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
62.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
62.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
62.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
61.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
61.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
61.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
61.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
61.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
60.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
59.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
58.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
58.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
58.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
58.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
58.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
58.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
57.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
57.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
57.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
56.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
56.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
56.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
56.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
56.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
55.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
55.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
55.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
54.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
54.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
54.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
53.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
53.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
53.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
52.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
52.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
51.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
51.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
51.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
51.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
51.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
51.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
50.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
50.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
50.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
50.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
49.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
49.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
49.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
49.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
49.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
48.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
47.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
47.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
46.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
46.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
46.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
46.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
45.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
45.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
44.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
44.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
44.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
44.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
44.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
44.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
44.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
44.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
44.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
44.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
43.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
42.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
42.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
42.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
42.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
42.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
42.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
42.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
42.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
42.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
42.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
41.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
41.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
41.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
41.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
41.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
40.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
40.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
40.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
39.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
39.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
39.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
39.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
39.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
38.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
38.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
38.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
38.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
38.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
38.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
37.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
36.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
36.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
35.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
35.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
35.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
35.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
35.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
35.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
34.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
33.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
33.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
33.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
33.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
33.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
33.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
32.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
32.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
31.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
31.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
31.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
31.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
30.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
30.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
29.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
29.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
29.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
28.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
27.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
27.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
27.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
26.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
26.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
26.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
25.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
25.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
24.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
23.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
23.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
22.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
22.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
22.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
22.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
21.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
21.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
21.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
21.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
21.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
19.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
19.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
18.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
17.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
13.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
6.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STBD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.5
Number of samples
231
Samples
Sample
Description
TPM
DO48746
0 years, male, NA, stage:3, alive, 570 days
200.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
135.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
134.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
132.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
122.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
122.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
100.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
97.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
94.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
94.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
92.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
89.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
89.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
86.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
84.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
78.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
77.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
76.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
75.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
75.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
73.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
73.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
71.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
71.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
69.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
68.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
68.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
66.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
66.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
66.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
65.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
65.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
63.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
61.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
60.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
60.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
60.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
59.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
58.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
57.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
57.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
55.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
54.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
54.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
53.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
53.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
53.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
53.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
53.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
52.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
52.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
52.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
51.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
51.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
51.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
51.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
50.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
49.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
49.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
48.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
48.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
47.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
46.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
45.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
45.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
45.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
45.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
45.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
45.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
44.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
44.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
43.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
42.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
42.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
41.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
41.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
41.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
40.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
40.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
40.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
40.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
39.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
39.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
38.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
38.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
38.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
37.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
37.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
37.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
36.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
36.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
36.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
36.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
36.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
36.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
35.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
35.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
35.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
35.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
33.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
33.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
33.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
32.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
31.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
31.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
31.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
30.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
29.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
29.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
29.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
29.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
28.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
28.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
28.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
27.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
27.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
27.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
26.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
26.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
25.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
25.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
25.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
24.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
24.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
24.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
23.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
23.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
22.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
22.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
21.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
21.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
19.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
19.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
19.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
17.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
15.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
15.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
13.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
3.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
3.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
2.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
954
Normal
1.2
746
Normal
1.0
727
Tumor
0.9
878
Normal
0.9
938
Normal
0.9
715
Tumor
0.9
744
Normal
0.9
955
Tumor
0.9
354
Normal
0.8
342
Normal
0.8
452
Normal
0.8
915
Tumor
0.8
882
Normal
0.8
422
Normal
0.8
228
Normal
0.8
922
Normal
0.8
1014
Normal
0.8
392
Normal
0.8
616
Normal
0.7
866
Normal
0.7
868
Normal
0.7
538
Normal
0.7
1022
Normal
0.7
714
Normal
0.7
478
Normal
0.7
572
Normal
0.7
426
Normal
0.7
376
Normal
0.7
858
Normal
0.7
913
Tumor
0.7
698
Normal
0.6
824
Normal
0.6
448
Normal
0.6
1043
Tumor
0.6
364
Normal
0.6
742
Normal
0.6
911
Tumor
0.6
388
Normal
0.6
488
Normal
0.6
268
Normal
0.6
412
Normal
0.6
284
Normal
0.6
958
Normal
0.6
956
Normal
0.6
148
Normal
0.6
484
Normal
0.6
132
Normal
0.6
862
Normal
0.6
1028
Normal
0.6
142
Normal
0.6
466
Normal
0.6
482
Normal
0.6
648
Normal
0.6
1046
Normal
0.6
818
Normal
0.6
534
Normal
0.6
1032
Normal
0.6
546
Normal
0.6
738
Normal
0.6
916
Normal
0.6
172
Normal
0.6
494
Normal
0.6
912
Normal
0.6
298
Normal
0.6
968
Normal
0.6
874
Normal
0.6
278
Normal
0.6
722
Normal
0.5
356
Normal
0.5
124
Normal
0.5
852
Normal
0.5
778
Normal
0.5
728
Normal
0.5
358
Normal
0.5
636
Normal
0.5
685
Tumor
0.5
362
Normal
0.5
642
Normal
0.5
344
Normal
0.5
128
Normal
0.5
867
Tumor
0.5
944
Normal
0.5
696
Normal
0.5
723
Tumor
0.5
416
Normal
0.5
462
Normal
0.5
384
Normal
0.5
524
Normal
0.5
1041
Tumor
0.5
286
Normal
0.5
755
Tumor
0.5
568
Normal
0.5
982
Normal
0.5
864
Normal
0.5
474
Normal
0.5
686
Normal
0.5
472
Normal
0.5
258
Normal
0.5
436
Normal
0.5
1026
Normal
0.5
232
Normal
0.5
976
Normal
0.5
1044
Normal
0.5
186
Normal
0.5
557
Tumor
0.5
481
Tumor
0.4
456
Normal
0.4
964
Normal
0.4
111
Normal
0.4
618
Normal
0.4
884
Normal
0.4
952
Normal
0.4
498
Normal
0.4
518
Normal
0.4
231
Tumor
0.4
224
Normal
0.4
368
Normal
0.4
816
Normal
0.4
464
Normal
0.4
554
Normal
0.4
162
Normal
0.4
138
Normal
0.4
857
Tumor
0.4
444
Normal
0.4
564
Normal
0.4
222
Normal
0.4
664
Normal
0.4
984
Normal
0.4
966
Normal
0.4
574
Normal
0.4
516
Normal
0.4
716
Normal
0.3
514
Normal
0.3
424
Normal
0.3
528
Normal
0.3
314
Normal
0.3
328
Normal
0.3
366
Normal
0.3
492
Normal
0.3
558
Normal
0.3
662
Normal
0.3
414
Normal
0.3
394
Normal
0.3
756
Normal
0.3
786
Normal
0.3
477
Tumor
0.3
446
Normal
0.3
1016
Normal
0.3
978
Normal
0.3
136
Normal
0.3
672
Normal
0.3
196
Normal
0.3
487
Tumor
0.3
262
Normal
0.3
536
Normal
0.2
926
Normal
0.2
666
Normal
0.2
914
Normal
0.2
1042
Normal
0.2
415
Tumor
0.2
396
Normal
0.2
214
Normal
0.2
114
Normal
0.2
341
Tumor
0.2
628
Normal
0.2
146
Normal
0.2
918
Normal
0.2
352
Normal
0.2
261
Tumor
0.2
272
Normal
0.2
1015
Tumor
0.2
188
Normal
0.2
365
Tumor
0.2
332
Normal
0.2
468
Normal
0.1
924
Normal
0.1
428
Normal
0.1
212
Normal
0.1
526
Normal
0.1
925
Tumor
0.1
312
Normal
0.1
386
Normal
0.1
218
Normal
0.1
126
Normal
0.1
785
Tumor
0.1
432
Normal
0.1
861
Tumor
0.1
137
Tumor
0.0
353
Tumor
0.0
873
Tumor
0.0
937
Tumor
0.0
635
Tumor
0.0
721
Tumor
0.0
423
Tumor
0.0
434
Normal
0.0
267
Tumor
0.0
465
Tumor
-0.1
1027
Tumor
-0.1
943
Tumor
-0.1
123
Tumor
-0.1
435
Tumor
-0.1
195
Tumor
-0.1
361
Tumor
-0.1
171
Tumor
-0.1
617
Tumor
-0.1
471
Tumor
-0.1
445
Tumor
-0.1
881
Tumor
-0.1
327
Tumor
-0.1
615
Tumor
-0.2
563
Tumor
-0.2
1025
Tumor
-0.2
223
Tumor
-0.2
161
Tumor
-0.2
523
Tumor
-0.2
433
Tumor
-0.2
421
Tumor
-0.2
513
Tumor
-0.2
461
Tumor
-0.2
641
Tumor
-0.3
187
Tumor
-0.3
447
Tumor
-0.3
981
Tumor
-0.3
192
Normal
-0.3
451
Tumor
-0.3
977
Tumor
-0.3
921
Tumor
-0.3
145
Tumor
-0.3
741
Tumor
-0.3
127
Tumor
-0.4
473
Tumor
-0.4
851
Tumor
-0.4
814
Normal
-0.4
431
Tumor
-0.4
627
Tumor
-0.4
553
Tumor
-0.4
491
Tumor
-0.4
823
Tumor
-0.4
257
Tumor
-0.5
191
Tumor
-0.5
533
Tumor
-0.5
112
Tumor
-0.5
113
Tumor
-0.5
963
Tumor
-0.5
427
Tumor
-0.5
817
Tumor
-0.6
647
Tumor
-0.6
975
Tumor
-0.6
883
Tumor
-0.6
393
Tumor
-0.6
217
Tumor
-0.6
663
Tumor
-0.6
863
Tumor
-0.6
713
Tumor
-0.6
185
Tumor
-0.7
483
Tumor
-0.7
493
Tumor
-0.7
227
Tumor
-0.7
1045
Tumor
-0.7
515
Tumor
-0.7
737
Tumor
-0.7
455
Tumor
-0.7
813
Tumor
-0.8
777
Tumor
-0.8
271
Tumor
-0.8
443
Tumor
-0.8
395
Tumor
-0.8
527
Tumor
-0.8
951
Tumor
-0.8
221
Tumor
-0.8
567
Tumor
-0.8
917
Tumor
-0.8
125
Tumor
-0.9
383
Tumor
-0.9
1031
Tumor
-0.9
745
Tumor
-0.9
695
Tumor
-0.9
355
Tumor
-0.9
1013
Tumor
-0.9
665
Tumor
-0.9
411
Tumor
-0.9
141
Tumor
-0.9
865
Tumor
-0.9
463
Tumor
-1.0
413
Tumor
-1.0
343
Tumor
-1.0
525
Tumor
-1.0
953
Tumor
-1.0
297
Tumor
-1.0
467
Tumor
-1.0
147
Tumor
-1.0
363
Tumor
-1.1
517
Tumor
-1.1
357
Tumor
-1.1
387
Tumor
-1.1
497
Tumor
-1.2
277
Tumor
-1.2
135
Tumor
-1.2
724
Normal
-1.2
965
Tumor
-1.2
697
Tumor
-1.2
983
Tumor
-1.2
571
Tumor
-1.2
923
Tumor
-1.3
877
Tumor
-1.3
375
Tumor
-1.3
285
Tumor
-1.3
131
Tumor
-1.3
535
Tumor
-1.3
391
Tumor
-1.3
331
Tumor
-1.4
1021
Tumor
-1.4
815
Tumor
-1.4
313
Tumor
-1.4
957
Tumor
-1.4
425
Tumor
-1.4
213
Tumor
-1.4
283
Tumor
-1.5
743
Tumor
-1.5
545
Tumor
-1.5
537
Tumor
-1.6
351
Tumor
-1.6
573
Tumor
-1.6
671
Tumor
-1.7
367
Tumor
-1.7
967
Tumor
-1.8
211
Tumor
-1.8
311
Tumor
-1.8
385
Tumor
-2.0
661
Tumor
-2.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
