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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP8 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
163.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
729.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
586.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
573.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
517.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
493.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
456.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
417.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
414.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
404.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
375.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
374.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
370.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
362.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
352.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
344.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
340.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
327.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
317.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
304.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
299.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
296.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
288.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
285.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
284.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
284.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
281.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
281.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
276.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
274.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
272.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
271.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
269.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
261.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
261.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
260.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
256.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
255.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
254.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
252.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
252.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
247.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
247.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
247.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
246.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
245.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
243.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
242.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
242.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
241.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
240.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
238.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
238.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
234.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
233.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
231.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
230.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
229.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
227.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
227.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
227.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
227.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
226.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
225.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
225.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
225.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
225.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
225.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
224.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
223.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
223.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
219.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
218.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
217.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
215.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
215.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
214.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
213.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
212.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
212.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
211.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
210.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
208.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
208.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
207.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
206.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
205.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
203.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
201.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
200.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
199.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
199.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
198.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
197.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
196.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
195.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
194.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
194.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
194.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
193.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
193.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
193.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
191.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
189.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
188.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
188.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
186.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
186.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
186.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
184.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
183.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
182.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
182.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
181.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
180.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
179.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
178.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
178.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
177.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
177.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
177.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
176.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
175.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
174.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
173.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
173.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
173.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
172.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
172.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
171.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
171.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
169.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
169.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
168.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
168.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
167.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
167.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
167.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
167.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
166.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
166.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
165.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
163.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
163.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
162.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
162.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
162.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
161.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
160.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
160.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
159.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
159.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
158.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
158.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
157.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
157.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
157.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
157.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
157.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
156.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
155.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
155.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
155.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
154.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
154.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
154.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
153.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
153.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
152.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
152.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
151.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
150.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
150.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
149.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
149.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
149.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
149.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
148.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
148.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
147.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
146.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
145.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
145.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
143.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
143.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
142.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
142.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
141.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
141.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
141.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
141.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
141.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
140.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
140.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
140.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
140.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
139.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
139.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
139.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
139.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
139.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
138.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
138.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
138.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
138.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
137.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
137.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
137.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
136.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
136.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
136.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
135.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
135.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
135.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
134.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
133.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
133.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
132.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
132.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
132.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
132.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
131.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
131.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
131.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
130.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
129.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
129.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
129.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
127.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
127.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
127.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
127.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
127.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
127.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
125.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
124.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
123.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
123.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
122.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
122.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
122.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
122.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
121.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
121.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
121.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
120.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
119.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
119.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
119.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
119.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
119.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
118.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
118.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
118.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
118.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
118.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
118.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
117.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
117.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
116.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
116.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
116.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
115.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
115.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
115.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
115.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
114.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
114.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
113.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
113.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
113.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
113.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
112.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
112.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
111.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
111.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
110.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
110.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
110.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
110.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
109.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
108.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
108.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
107.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
106.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
106.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
106.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
106.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
106.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
106.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
106.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
105.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
105.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
104.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
104.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
104.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
104.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
103.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
101.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
101.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
100.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
100.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
99.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
98.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
97.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
97.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
96.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
96.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
95.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
95.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
94.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
94.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
93.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
92.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
91.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
90.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
90.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
90.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
88.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
88.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
86.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
86.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
85.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
84.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
83.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
83.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
81.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
80.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
79.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
77.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
76.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
74.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
72.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
71.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
70.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
69.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
68.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
65.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
65.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
64.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
61.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
57.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
56.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
55.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
55.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
55.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
50.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
44.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
42.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
41.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
41.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
33.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
23.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
22.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VAMP8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
121.8
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
566.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
462.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
444.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
400.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
371.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
317.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
293.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
285.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
284.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
284.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
274.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
270.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
260.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
252.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
251.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
234.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
231.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
228.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
224.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
219.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
218.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
216.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
215.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
209.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
200.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
197.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
196.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
194.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
192.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
184.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
183.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
180.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
178.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
178.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
177.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
177.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
175.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
174.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
174.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
171.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
169.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
168.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
168.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
167.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
162.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
159.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
159.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
158.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
158.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
155.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
154.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
153.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
153.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
150.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
149.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
148.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
147.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
147.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
147.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
146.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
144.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
141.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
140.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
140.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
140.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
139.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
138.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
137.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
137.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
136.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
136.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
135.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
135.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
134.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
133.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
133.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
133.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
133.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
131.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
131.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
131.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
131.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
129.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
128.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
128.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
127.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
126.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
125.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
124.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
124.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
123.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
119.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
119.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
118.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
118.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
118.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
118.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
117.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
117.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
116.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
116.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
115.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
115.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
114.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
114.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
113.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
113.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
112.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
112.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
111.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
111.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
111.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
108.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
108.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
108.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
107.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
107.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
107.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
106.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
105.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
105.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
105.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
103.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
102.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
100.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
100.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
99.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
98.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
97.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
97.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
97.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
96.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
96.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
96.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
94.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
94.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
94.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
94.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
94.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
93.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
93.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
93.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
91.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
90.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
90.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
89.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
89.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
89.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
89.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
88.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
88.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
87.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
87.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
87.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
86.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
85.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
84.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
82.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
82.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
82.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
81.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
81.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
80.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
79.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
79.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
79.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
79.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
78.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
78.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
77.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
76.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
76.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
75.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
75.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
74.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
73.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
72.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
72.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
72.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
71.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
71.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
70.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
69.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
69.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
68.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
67.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
67.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
67.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
66.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
65.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
65.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
64.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
62.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
61.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
61.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
60.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
59.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
58.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
58.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
58.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
57.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
56.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
54.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
52.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
50.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
50.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
48.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
46.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
45.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
45.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
45.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
44.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
43.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
41.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
39.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
39.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
38.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
37.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
35.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
34.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
19.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
19.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
1.7
967
Tumor
1.2
925
Tumor
1.1
983
Tumor
1.1
921
Tumor
1.1
477
Tumor
1.0
951
Tumor
1.0
271
Tumor
1.0
211
Tumor
0.9
817
Tumor
0.9
724
Normal
0.9
1025
Tumor
0.9
641
Tumor
0.9
553
Tumor
0.9
525
Tumor
0.8
1031
Tumor
0.8
823
Tumor
0.8
385
Tumor
0.8
524
Normal
0.8
917
Tumor
0.8
975
Tumor
0.7
311
Tumor
0.7
498
Normal
0.7
367
Tumor
0.6
221
Tumor
0.6
455
Tumor
0.6
937
Tumor
0.6
881
Tumor
0.6
883
Tumor
0.6
492
Normal
0.6
425
Tumor
0.5
331
Tumor
0.5
978
Normal
0.5
491
Tumor
0.5
953
Tumor
0.5
916
Normal
0.5
966
Normal
0.5
536
Normal
0.5
535
Tumor
0.5
863
Tumor
0.5
1013
Tumor
0.5
1021
Tumor
0.5
387
Tumor
0.5
443
Tumor
0.5
954
Normal
0.5
497
Tumor
0.5
537
Tumor
0.5
851
Tumor
0.4
697
Tumor
0.4
341
Tumor
0.4
538
Normal
0.4
545
Tumor
0.4
478
Normal
0.4
447
Tumor
0.4
955
Tumor
0.4
778
Normal
0.4
755
Tumor
0.4
617
Tumor
0.4
493
Tumor
0.4
745
Tumor
0.4
494
Normal
0.4
957
Tumor
0.4
567
Tumor
0.3
926
Normal
0.3
517
Tumor
0.3
737
Tumor
0.3
743
Tumor
0.3
721
Tumor
0.3
984
Normal
0.3
533
Tumor
0.3
1028
Normal
0.3
813
Tumor
0.3
686
Normal
0.3
557
Tumor
0.3
943
Tumor
0.3
268
Normal
0.3
563
Tumor
0.3
415
Tumor
0.3
488
Normal
0.3
661
Tumor
0.3
224
Normal
0.3
297
Tumor
0.3
355
Tumor
0.3
814
Normal
0.3
135
Tumor
0.3
284
Normal
0.2
952
Normal
0.2
918
Normal
0.2
395
Tumor
0.2
343
Tumor
0.2
223
Tumor
0.2
467
Tumor
0.2
363
Tumor
0.2
924
Normal
0.2
262
Normal
0.2
434
Normal
0.2
963
Tumor
0.2
573
Tumor
0.2
212
Normal
0.2
227
Tumor
0.2
526
Normal
0.2
923
Tumor
0.2
922
Normal
0.2
857
Tumor
0.2
328
Normal
0.2
514
Normal
0.2
518
Normal
0.2
852
Normal
0.2
528
Normal
0.2
391
Tumor
0.2
1045
Tumor
0.2
375
Tumor
0.2
516
Normal
0.2
396
Normal
0.2
365
Tumor
0.2
195
Tumor
0.1
513
Tumor
0.1
1044
Normal
0.1
515
Tumor
0.1
554
Normal
0.1
474
Normal
0.1
465
Tumor
0.1
327
Tumor
0.1
1043
Tumor
0.1
283
Tumor
0.1
267
Tumor
0.1
864
Normal
0.1
421
Tumor
0.1
463
Tumor
0.1
976
Normal
0.1
1014
Normal
0.1
956
Normal
0.1
124
Normal
0.1
461
Tumor
0.1
416
Normal
0.1
1042
Normal
0.1
137
Tumor
0.1
786
Normal
0.1
696
Normal
0.1
125
Tumor
0.1
558
Normal
0.1
913
Tumor
0.1
131
Tumor
0.1
756
Normal
0.1
716
Normal
0.1
546
Normal
0.0
286
Normal
0.0
446
Normal
0.0
574
Normal
0.0
1016
Normal
0.0
444
Normal
0.0
257
Tumor
0.0
232
Normal
0.0
564
Normal
0.0
364
Normal
0.0
965
Tumor
0.0
858
Normal
0.0
362
Normal
0.0
383
Tumor
0.0
635
Tumor
0.0
392
Normal
0.0
866
Normal
0.0
874
Normal
0.0
185
Tumor
0.0
982
Normal
0.0
746
Normal
0.0
386
Normal
0.0
145
Tumor
0.0
1026
Normal
0.0
411
Tumor
0.0
777
Tumor
0.0
1015
Tumor
0.0
142
Normal
0.0
462
Normal
0.0
914
Normal
0.0
213
Tumor
0.0
228
Normal
0.0
412
Normal
0.0
188
Normal
0.0
628
Normal
0.0
487
Tumor
0.0
534
Normal
0.0
938
Normal
0.0
217
Tumor
0.0
472
Normal
0.0
138
Normal
0.0
1046
Normal
0.0
815
Tumor
0.0
944
Normal
0.0
231
Tumor
0.0
484
Normal
0.0
728
Normal
0.0
861
Tumor
-0.1
877
Tumor
-0.1
572
Normal
-0.1
523
Tumor
-0.1
527
Tumor
-0.1
912
Normal
-0.1
713
Tumor
-0.1
123
Tumor
-0.1
427
Tumor
-0.1
722
Normal
-0.1
147
Tumor
-0.1
816
Normal
-0.1
878
Normal
-0.1
671
Tumor
-0.1
968
Normal
-0.1
714
Normal
-0.1
642
Normal
-0.1
884
Normal
-0.1
413
Tumor
-0.1
352
Normal
-0.1
351
Tumor
-0.1
882
Normal
-0.1
313
Tumor
-0.1
468
Normal
-0.1
368
Normal
-0.1
384
Normal
-0.1
482
Normal
-0.1
191
Tumor
-0.1
258
Normal
-0.1
448
Normal
-0.1
272
Normal
-0.1
868
Normal
-0.1
432
Normal
-0.1
958
Normal
-0.1
357
Tumor
-0.1
568
Normal
-0.1
862
Normal
-0.1
1032
Normal
-0.1
873
Tumor
-0.2
977
Tumor
-0.2
824
Normal
-0.2
456
Normal
-0.2
964
Normal
-0.2
738
Normal
-0.2
127
Tumor
-0.2
312
Normal
-0.2
278
Normal
-0.2
466
Normal
-0.2
353
Tumor
-0.2
426
Normal
-0.2
344
Normal
-0.2
1022
Normal
-0.2
818
Normal
-0.2
672
Normal
-0.2
136
Normal
-0.2
277
Tumor
-0.2
356
Normal
-0.2
187
Tumor
-0.2
423
Tumor
-0.2
394
Normal
-0.2
146
Normal
-0.2
662
Normal
-0.2
695
Tumor
-0.3
698
Normal
-0.3
366
Normal
-0.3
723
Tumor
-0.3
298
Normal
-0.3
436
Normal
-0.3
332
Normal
-0.3
666
Normal
-0.3
664
Normal
-0.3
422
Normal
-0.3
665
Tumor
-0.3
715
Tumor
-0.3
218
Normal
-0.3
424
Normal
-0.3
393
Tumor
-0.3
616
Normal
-0.3
388
Normal
-0.3
314
Normal
-0.3
126
Normal
-0.3
435
Tumor
-0.3
618
Normal
-0.3
361
Tumor
-0.3
354
Normal
-0.3
452
Normal
-0.4
451
Tumor
-0.4
162
Normal
-0.4
627
Tumor
-0.4
171
Tumor
-0.4
727
Tumor
-0.4
376
Normal
-0.4
464
Normal
-0.4
358
Normal
-0.4
428
Normal
-0.4
172
Normal
-0.4
1041
Tumor
-0.4
445
Tumor
-0.4
285
Tumor
-0.4
414
Normal
-0.4
214
Normal
-0.4
141
Tumor
-0.4
186
Normal
-0.4
636
Normal
-0.4
431
Tumor
-0.5
192
Normal
-0.5
744
Normal
-0.5
161
Tumor
-0.5
114
Normal
-0.5
342
Normal
-0.5
648
Normal
-0.5
111
Normal
-0.5
261
Tumor
-0.5
867
Tumor
-0.5
615
Tumor
-0.5
132
Normal
-0.5
433
Tumor
-0.5
571
Tumor
-0.5
685
Tumor
-0.5
113
Tumor
-0.5
742
Normal
-0.5
865
Tumor
-0.5
222
Normal
-0.6
196
Normal
-0.6
915
Tumor
-0.6
481
Tumor
-0.6
148
Normal
-0.7
785
Tumor
-0.7
663
Tumor
-0.7
483
Tumor
-0.8
981
Tumor
-0.8
128
Normal
-0.8
647
Tumor
-0.9
741
Tumor
-1.0
112
Tumor
-1.1
1027
Tumor
-1.2
473
Tumor
-1.3
911
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.