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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB32 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
141.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
90.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
83.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
81.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
78.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
75.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
73.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
71.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
71.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
68.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
61.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
61.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
60.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
58.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
57.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
57.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
56.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
56.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
56.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
55.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
54.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
53.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
52.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
52.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
51.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
50.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
50.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
49.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
48.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
48.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
47.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
47.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
46.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
45.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
45.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
44.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
44.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
44.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
43.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
43.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
42.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
41.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
41.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
41.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
41.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
41.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
40.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
40.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
39.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
39.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
39.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
39.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
38.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
38.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
37.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
36.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
36.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
36.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
35.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
35.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
35.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
35.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
35.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
34.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
34.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
34.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
34.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
34.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
34.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
33.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
33.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
33.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
33.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
33.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
33.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
33.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
32.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
32.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
32.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
32.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
32.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
32.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
32.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
32.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
31.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
31.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
31.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
31.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
30.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
30.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
29.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
29.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
29.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
29.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
29.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
29.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
28.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
28.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
27.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
27.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
27.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
27.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
27.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
27.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
26.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
26.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
26.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
26.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
26.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
25.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
25.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
25.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
25.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
25.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
24.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
24.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
24.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
24.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
22.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
22.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
22.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
22.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
22.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
22.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
22.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
22.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
21.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
21.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
20.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
20.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
20.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
20.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
20.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
20.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
20.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
20.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
20.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
19.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
19.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
19.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
19.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
18.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
18.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
17.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
17.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
16.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
16.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
16.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
15.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
15.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
15.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
15.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
14.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
14.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
14.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
13.8
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
11.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
11.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
11.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
10.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
10.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
9.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RAB32 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.9
Number of samples
231
Samples
Sample
Description
TPM
DO48741
0 years, male, NA, stage:3, alive, 240 days
64.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
63.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
62.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
62.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
61.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
61.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
56.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
54.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
54.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
54.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
47.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
45.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
40.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
40.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
39.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
37.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
36.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
36.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
36.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
36.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
35.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
33.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
32.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
32.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
31.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
30.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
30.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
30.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
29.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
29.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
29.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
28.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
27.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
26.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
26.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
24.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
24.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
21.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
21.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
20.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
19.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
19.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
17.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
17.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
16.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
15.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
15.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
14.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
14.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
13.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
11.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
5.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
5.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
2.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
851
Tumor
0.9
943
Tumor
0.9
1013
Tumor
0.8
125
Tumor
0.7
211
Tumor
0.7
724
Normal
0.6
147
Tumor
0.6
978
Normal
0.6
478
Normal
0.6
921
Tumor
0.6
491
Tumor
0.6
463
Tumor
0.5
523
Tumor
0.5
455
Tumor
0.5
953
Tumor
0.5
498
Normal
0.5
524
Normal
0.5
852
Normal
0.5
145
Tumor
0.5
224
Normal
0.5
492
Normal
0.4
913
Tumor
0.4
311
Tumor
0.4
283
Tumor
0.4
966
Normal
0.4
865
Tumor
0.4
563
Tumor
0.4
881
Tumor
0.4
1044
Normal
0.4
916
Normal
0.4
954
Normal
0.3
952
Normal
0.3
142
Normal
0.3
514
Normal
0.3
868
Normal
0.3
925
Tumor
0.3
537
Tumor
0.3
716
Normal
0.3
1021
Tumor
0.3
1014
Normal
0.3
262
Normal
0.3
727
Tumor
0.3
884
Normal
0.3
447
Tumor
0.3
914
Normal
0.3
536
Normal
0.3
1028
Normal
0.3
922
Normal
0.3
434
Normal
0.3
696
Normal
0.3
1015
Tumor
0.3
137
Tumor
0.3
861
Tumor
0.3
518
Normal
0.3
917
Tumor
0.3
1027
Tumor
0.3
286
Normal
0.3
558
Normal
0.3
1026
Normal
0.3
824
Normal
0.3
1022
Normal
0.3
816
Normal
0.3
958
Normal
0.3
923
Tumor
0.3
415
Tumor
0.3
964
Normal
0.3
778
Normal
0.3
424
Normal
0.3
268
Normal
0.3
882
Normal
0.3
284
Normal
0.2
462
Normal
0.2
364
Normal
0.2
526
Normal
0.2
1046
Normal
0.2
356
Normal
0.2
616
Normal
0.2
538
Normal
0.2
912
Normal
0.2
686
Normal
0.2
741
Tumor
0.2
938
Normal
0.2
494
Normal
0.2
878
Normal
0.2
968
Normal
0.2
444
Normal
0.2
663
Tumor
0.2
488
Normal
0.2
976
Normal
0.2
375
Tumor
0.2
926
Normal
0.2
328
Normal
0.2
212
Normal
0.2
786
Normal
0.2
713
Tumor
0.2
188
Normal
0.2
472
Normal
0.2
944
Normal
0.2
965
Tumor
0.2
714
Normal
0.2
111
Normal
0.2
466
Normal
0.2
474
Normal
0.2
1016
Normal
0.2
416
Normal
0.2
484
Normal
0.2
742
Normal
0.2
984
Normal
0.2
628
Normal
0.2
785
Tumor
0.2
572
Normal
0.2
864
Normal
0.2
858
Normal
0.2
482
Normal
0.2
857
Tumor
0.2
343
Tumor
0.2
162
Normal
0.2
414
Normal
0.2
823
Tumor
0.2
874
Normal
0.2
866
Normal
0.2
862
Normal
0.2
285
Tumor
0.2
392
Normal
0.1
1042
Normal
0.1
528
Normal
0.1
413
Tumor
0.1
387
Tumor
0.1
358
Normal
0.1
354
Normal
0.1
883
Tumor
0.1
172
Normal
0.1
535
Tumor
0.1
728
Normal
0.1
745
Tumor
0.1
956
Normal
0.1
636
Normal
0.1
432
Normal
0.1
361
Tumor
0.1
755
Tumor
0.1
126
Normal
0.1
352
Normal
0.1
664
Normal
0.1
412
Normal
0.1
124
Normal
0.1
1032
Normal
0.1
313
Tumor
0.1
554
Normal
0.1
867
Tumor
0.1
627
Tumor
0.1
818
Normal
0.1
863
Tumor
0.1
516
Normal
0.1
525
Tumor
0.1
955
Tumor
0.1
113
Tumor
0.1
448
Normal
0.1
228
Normal
0.1
723
Tumor
0.1
191
Tumor
0.1
756
Normal
0.1
814
Normal
0.1
368
Normal
0.1
918
Normal
0.1
421
Tumor
0.1
355
Tumor
0.1
223
Tumor
0.0
464
Normal
0.0
924
Normal
0.0
312
Normal
0.0
411
Tumor
0.0
698
Normal
0.0
915
Tumor
0.0
435
Tumor
0.0
815
Tumor
0.0
481
Tumor
0.0
362
Normal
0.0
715
Tumor
0.0
967
Tumor
0.0
214
Normal
0.0
738
Normal
0.0
737
Tumor
0.0
568
Normal
0.0
468
Normal
0.0
721
Tumor
0.0
697
Tumor
0.0
963
Tumor
0.0
467
Tumor
0.0
394
Normal
0.0
564
Normal
0.0
452
Normal
0.0
428
Normal
0.0
146
Normal
0.0
136
Normal
0.0
272
Normal
0.0
567
Tumor
0.0
517
Tumor
0.0
114
Normal
0.0
574
Normal
0.0
218
Normal
0.0
666
Normal
0.0
746
Normal
0.0
384
Normal
0.0
527
Tumor
0.0
148
Normal
0.0
911
Tumor
0.0
456
Normal
0.0
396
Normal
0.0
685
Tumor
0.0
477
Tumor
0.0
297
Tumor
0.0
642
Normal
0.0
648
Normal
0.0
957
Tumor
0.0
217
Tumor
-0.1
672
Normal
-0.1
232
Normal
-0.1
344
Normal
-0.1
446
Normal
-0.1
981
Tumor
-0.1
573
Tumor
-0.1
695
Tumor
-0.1
546
Normal
-0.1
982
Normal
-0.1
425
Tumor
-0.1
422
Normal
-0.1
376
Normal
-0.1
186
Normal
-0.1
353
Tumor
-0.1
366
Normal
-0.1
187
Tumor
-0.1
138
Normal
-0.1
662
Normal
-0.1
196
Normal
-0.1
277
Tumor
-0.1
1045
Tumor
-0.1
128
Normal
-0.1
314
Normal
-0.1
436
Normal
-0.1
873
Tumor
-0.1
342
Normal
-0.1
192
Normal
-0.1
615
Tumor
-0.1
471
Tumor
-0.1
461
Tumor
-0.1
213
Tumor
-0.1
386
Normal
-0.1
665
Tumor
-0.1
451
Tumor
-0.1
975
Tumor
-0.1
937
Tumor
-0.1
395
Tumor
-0.1
1043
Tumor
-0.1
483
Tumor
-0.1
132
Normal
-0.1
813
Tumor
-0.1
258
Normal
-0.2
661
Tumor
-0.2
617
Tumor
-0.2
367
Tumor
-0.2
1031
Tumor
-0.2
722
Normal
-0.2
426
Normal
-0.2
493
Tumor
-0.2
357
Tumor
-0.2
365
Tumor
-0.2
388
Normal
-0.2
391
Tumor
-0.2
271
Tumor
-0.2
877
Tumor
-0.2
298
Normal
-0.2
363
Tumor
-0.2
744
Normal
-0.2
332
Normal
-0.2
618
Normal
-0.2
141
Tumor
-0.2
278
Normal
-0.2
161
Tumor
-0.2
465
Tumor
-0.2
222
Normal
-0.2
647
Tumor
-0.3
261
Tumor
-0.3
267
Tumor
-0.3
817
Tumor
-0.3
383
Tumor
-0.3
135
Tumor
-0.3
185
Tumor
-0.3
445
Tumor
-0.3
327
Tumor
-0.3
431
Tumor
-0.3
641
Tumor
-0.3
195
Tumor
-0.3
534
Normal
-0.3
515
Tumor
-0.4
983
Tumor
-0.4
497
Tumor
-0.4
951
Tumor
-0.4
423
Tumor
-0.4
533
Tumor
-0.4
545
Tumor
-0.4
977
Tumor
-0.4
433
Tumor
-0.4
777
Tumor
-0.4
1025
Tumor
-0.4
513
Tumor
-0.5
385
Tumor
-0.5
131
Tumor
-0.5
257
Tumor
-0.5
351
Tumor
-0.5
473
Tumor
-0.5
393
Tumor
-0.5
221
Tumor
-0.5
231
Tumor
-0.5
487
Tumor
-0.5
1041
Tumor
-0.6
553
Tumor
-0.6
123
Tumor
-0.6
341
Tumor
-0.6
571
Tumor
-0.6
331
Tumor
-0.6
127
Tumor
-0.6
671
Tumor
-0.7
427
Tumor
-0.7
443
Tumor
-0.7
171
Tumor
-0.7
112
Tumor
-0.8
557
Tumor
-0.8
227
Tumor
-0.9
635
Tumor
-1.1
743
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
