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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNFAIP3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
57.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
55.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
45.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
34.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
33.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
32.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
28.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
27.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
26.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
22.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
20.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
20.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
18.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
18.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
18.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
16.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
15.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
15.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
15.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
15.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
15.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
13.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
13.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
12.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
11.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
10.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
10.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
8.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
8.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
6.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
6.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
6.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
5.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
4.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
3.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
2.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
1.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TNFAIP3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.5
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
116.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
115.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
87.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
76.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
68.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
65.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
63.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
60.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
52.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
51.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
51.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
51.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
50.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
50.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
49.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
48.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
45.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
44.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
44.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
43.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
43.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
42.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
41.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
40.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
40.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
39.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
38.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
37.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
34.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
32.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
32.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
26.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
25.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
23.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
22.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
22.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
22.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
22.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
22.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
21.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
19.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
19.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
19.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
19.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
19.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
18.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
18.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
16.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
13.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
12.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
11.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
7.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
6.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
4.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
4.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
665
Tumor
1.9
211
Tumor
1.9
231
Tumor
1.8
351
Tumor
1.7
123
Tumor
1.5
724
Normal
1.4
395
Tumor
1.3
451
Tumor
1.2
915
Tumor
1.1
473
Tumor
1.0
685
Tumor
0.9
171
Tumor
0.9
937
Tumor
0.9
861
Tumor
0.9
1015
Tumor
0.8
755
Tumor
0.8
425
Tumor
0.7
715
Tumor
0.7
913
Tumor
0.7
217
Tumor
0.7
187
Tumor
0.7
113
Tumor
0.7
883
Tumor
0.6
557
Tumor
0.6
975
Tumor
0.6
663
Tumor
0.5
911
Tumor
0.5
191
Tumor
0.5
471
Tumor
0.4
851
Tumor
0.4
221
Tumor
0.4
965
Tumor
0.4
977
Tumor
0.4
815
Tumor
0.4
261
Tumor
0.4
524
Normal
0.4
573
Tumor
0.4
1021
Tumor
0.4
943
Tumor
0.3
483
Tumor
0.3
981
Tumor
0.3
145
Tumor
0.3
1041
Tumor
0.3
477
Tumor
0.3
445
Tumor
0.3
391
Tumor
0.3
443
Tumor
0.2
413
Tumor
0.2
951
Tumor
0.2
563
Tumor
0.2
127
Tumor
0.2
431
Tumor
0.2
963
Tumor
0.2
661
Tumor
0.2
533
Tumor
0.2
343
Tumor
0.2
112
Tumor
0.2
455
Tumor
0.2
487
Tumor
0.2
285
Tumor
0.2
341
Tumor
0.2
126
Normal
0.1
877
Tumor
0.1
617
Tumor
0.1
427
Tumor
0.1
267
Tumor
0.1
814
Normal
0.1
223
Tumor
0.1
358
Normal
0.1
375
Tumor
0.1
666
Normal
0.1
387
Tumor
0.1
647
Tumor
0.1
917
Tumor
0.1
493
Tumor
0.1
966
Normal
0.1
813
Tumor
0.1
185
Tumor
0.1
925
Tumor
0.1
262
Normal
0.1
271
Tumor
0.1
978
Normal
0.1
434
Normal
0.1
192
Normal
0.1
635
Tumor
0.1
867
Tumor
0.0
463
Tumor
0.0
353
Tumor
0.0
527
Tumor
0.0
523
Tumor
0.0
1031
Tumor
0.0
342
Normal
0.0
478
Normal
0.0
124
Normal
0.0
525
Tumor
0.0
131
Tumor
0.0
916
Normal
0.0
352
Normal
0.0
141
Tumor
0.0
383
Tumor
0.0
567
Tumor
0.0
465
Tumor
0.0
492
Normal
0.0
881
Tumor
0.0
188
Normal
-0.1
354
Normal
-0.1
433
Tumor
-0.1
921
Tumor
-0.1
195
Tumor
-0.1
467
Tumor
-0.1
873
Tumor
-0.1
272
Normal
-0.1
268
Normal
-0.1
817
Tumor
-0.1
516
Normal
-0.1
415
Tumor
-0.1
1028
Normal
-0.1
983
Tumor
-0.1
713
Tumor
-0.1
344
Normal
-0.1
111
Normal
-0.1
671
Tumor
-0.1
125
Tumor
-0.1
277
Tumor
-0.1
444
Normal
-0.1
1042
Normal
-0.1
384
Normal
-0.1
662
Normal
-0.1
538
Normal
-0.1
641
Tumor
-0.1
672
Normal
-0.1
884
Normal
-0.1
161
Tumor
-0.1
955
Tumor
-0.1
147
Tumor
-0.1
186
Normal
-0.1
366
Normal
-0.1
114
Normal
-0.1
777
Tumor
-0.1
146
Normal
-0.1
954
Normal
-0.1
627
Tumor
-0.1
664
Normal
-0.1
498
Normal
-0.2
756
Normal
-0.2
721
Tumor
-0.2
311
Tumor
-0.2
1016
Normal
-0.2
716
Normal
-0.2
297
Tumor
-0.2
461
Tumor
-0.2
696
Normal
-0.2
491
Tumor
-0.2
213
Tumor
-0.2
411
Tumor
-0.2
741
Tumor
-0.2
785
Tumor
-0.2
1025
Tumor
-0.2
435
Tumor
-0.2
331
Tumor
-0.2
958
Normal
-0.2
1045
Tumor
-0.2
737
Tumor
-0.2
361
Tumor
-0.2
386
Normal
-0.2
362
Normal
-0.2
385
Tumor
-0.2
857
Tumor
-0.2
232
Normal
-0.2
745
Tumor
-0.2
363
Tumor
-0.2
396
Normal
-0.2
162
Normal
-0.2
778
Normal
-0.2
536
Normal
-0.2
823
Tumor
-0.2
574
Normal
-0.3
1032
Normal
-0.3
332
Normal
-0.3
1026
Normal
-0.3
428
Normal
-0.3
1043
Tumor
-0.3
224
Normal
-0.3
128
Normal
-0.3
648
Normal
-0.3
488
Normal
-0.3
172
Normal
-0.3
447
Tumor
-0.3
368
Normal
-0.3
727
Tumor
-0.3
138
Normal
-0.3
518
Normal
-0.3
564
Normal
-0.3
914
Normal
-0.3
528
Normal
-0.3
952
Normal
-0.3
956
Normal
-0.3
878
Normal
-0.3
464
Normal
-0.3
426
Normal
-0.3
212
Normal
-0.3
258
Normal
-0.3
416
Normal
-0.3
568
Normal
-0.3
1013
Tumor
-0.3
628
Normal
-0.3
882
Normal
-0.3
472
Normal
-0.3
456
Normal
-0.3
923
Tumor
-0.3
912
Normal
-0.3
984
Normal
-0.3
422
Normal
-0.3
526
Normal
-0.3
424
Normal
-0.3
298
Normal
-0.3
484
Normal
-0.3
446
Normal
-0.3
686
Normal
-0.3
558
Normal
-0.3
982
Normal
-0.4
284
Normal
-0.4
697
Tumor
-0.4
355
Tumor
-0.4
482
Normal
-0.4
474
Normal
-0.4
286
Normal
-0.4
514
Normal
-0.4
546
Normal
-0.4
1014
Normal
-0.4
868
Normal
-0.4
515
Tumor
-0.4
414
Normal
-0.4
423
Tumor
-0.4
136
Normal
-0.4
553
Tumor
-0.4
312
Normal
-0.4
976
Normal
-0.4
432
Normal
-0.4
365
Tumor
-0.4
722
Normal
-0.4
388
Normal
-0.4
926
Normal
-0.4
218
Normal
-0.4
545
Tumor
-0.4
572
Normal
-0.4
863
Tumor
-0.4
135
Tumor
-0.4
865
Tumor
-0.4
137
Tumor
-0.4
376
Normal
-0.4
357
Tumor
-0.4
421
Tumor
-0.4
517
Tumor
-0.4
497
Tumor
-0.4
1044
Normal
-0.4
862
Normal
-0.4
142
Normal
-0.4
554
Normal
-0.4
864
Normal
-0.4
468
Normal
-0.4
616
Normal
-0.4
1046
Normal
-0.4
964
Normal
-0.4
228
Normal
-0.4
852
Normal
-0.4
636
Normal
-0.4
412
Normal
-0.5
367
Tumor
-0.5
874
Normal
-0.5
786
Normal
-0.5
738
Normal
-0.5
922
Normal
-0.5
394
Normal
-0.5
858
Normal
-0.5
918
Normal
-0.5
494
Normal
-0.5
196
Normal
-0.5
818
Normal
-0.5
938
Normal
-0.5
278
Normal
-0.5
618
Normal
-0.5
148
Normal
-0.5
642
Normal
-0.5
535
Tumor
-0.5
746
Normal
-0.5
534
Normal
-0.5
1022
Normal
-0.5
214
Normal
-0.5
222
Normal
-0.5
742
Normal
-0.5
714
Normal
-0.5
744
Normal
-0.5
448
Normal
-0.5
944
Normal
-0.5
452
Normal
-0.5
924
Normal
-0.5
314
Normal
-0.5
816
Normal
-0.5
392
Normal
-0.5
283
Tumor
-0.5
328
Normal
-0.5
364
Normal
-0.5
615
Tumor
-0.5
728
Normal
-0.6
466
Normal
-0.6
968
Normal
-0.6
695
Tumor
-0.6
132
Normal
-0.6
537
Tumor
-0.6
824
Normal
-0.6
436
Normal
-0.6
227
Tumor
-0.6
866
Normal
-0.6
953
Tumor
-0.6
313
Tumor
-0.6
513
Tumor
-0.6
481
Tumor
-0.7
462
Normal
-0.7
723
Tumor
-0.7
743
Tumor
-0.7
356
Normal
-0.7
327
Tumor
-0.7
698
Normal
-0.7
257
Tumor
-0.8
967
Tumor
-0.9
957
Tumor
-0.9
393
Tumor
-0.9
571
Tumor
-0.9
1027
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
