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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CA14 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
76.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
60.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
53.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
51.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
50.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
47.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
39.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
33.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
31.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
30.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
25.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
23.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
20.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
18.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
17.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
17.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
16.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
15.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
15.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
14.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
14.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
7.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
4.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
4.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
3.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
3.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
3.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
2.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CA14 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.5
Number of samples
231
Samples
Sample
Description
TPM
DO23516
0 years, male, NA, stage:3, dead, 20 days
79.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
56.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
45.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
44.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
42.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
42.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
30.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
26.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
23.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
22.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
20.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
19.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
18.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
11.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
10.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.2
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
8.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
7.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
6.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
3.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
2.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
2.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
1.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
1.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
1.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
128
Normal
1.9
481
Tumor
1.8
878
Normal
1.6
818
Normal
1.6
196
Normal
1.6
698
Normal
1.6
186
Normal
1.5
342
Normal
1.5
824
Normal
1.5
742
Normal
1.5
911
Tumor
1.4
1046
Normal
1.4
648
Normal
1.4
862
Normal
1.3
412
Normal
1.3
636
Normal
1.3
924
Normal
1.3
777
Tumor
1.3
515
Tumor
1.3
484
Normal
1.3
452
Normal
1.3
944
Normal
1.2
482
Normal
1.2
915
Tumor
1.2
148
Normal
1.2
984
Normal
1.2
111
Normal
1.2
744
Normal
1.1
426
Normal
1.1
332
Normal
1.1
162
Normal
1.1
376
Normal
1.1
546
Normal
1.1
1022
Normal
1.1
618
Normal
1.1
864
Normal
1.1
628
Normal
1.1
514
Normal
1.0
456
Normal
1.0
516
Normal
1.0
132
Normal
1.0
534
Normal
1.0
716
Normal
1.0
666
Normal
1.0
572
Normal
1.0
356
Normal
1.0
432
Normal
1.0
568
Normal
1.0
664
Normal
1.0
977
Tumor
1.0
358
Normal
1.0
422
Normal
0.9
938
Normal
0.9
464
Normal
0.9
912
Normal
0.9
446
Normal
0.9
366
Normal
0.9
468
Normal
0.9
574
Normal
0.9
314
Normal
0.9
642
Normal
0.9
222
Normal
0.9
448
Normal
0.9
416
Normal
0.9
714
Normal
0.8
866
Normal
0.8
488
Normal
0.8
696
Normal
0.8
494
Normal
0.8
364
Normal
0.8
914
Normal
0.8
918
Normal
0.8
816
Normal
0.8
286
Normal
0.8
756
Normal
0.8
114
Normal
0.8
278
Normal
0.8
786
Normal
0.8
388
Normal
0.8
858
Normal
0.8
922
Normal
0.7
746
Normal
0.7
298
Normal
0.7
354
Normal
0.7
232
Normal
0.7
686
Normal
0.7
472
Normal
0.7
518
Normal
0.7
1016
Normal
0.7
863
Tumor
0.7
172
Normal
0.7
466
Normal
0.7
564
Normal
0.7
616
Normal
0.7
955
Tumor
0.7
212
Normal
0.7
1044
Normal
0.7
982
Normal
0.7
436
Normal
0.6
723
Tumor
0.6
445
Tumor
0.6
272
Normal
0.6
1032
Normal
0.6
424
Normal
0.6
368
Normal
0.6
976
Normal
0.6
462
Normal
0.6
528
Normal
0.6
284
Normal
0.6
352
Normal
0.6
1026
Normal
0.6
954
Normal
0.5
882
Normal
0.5
433
Tumor
0.5
414
Normal
0.5
738
Normal
0.5
662
Normal
0.5
142
Normal
0.5
344
Normal
0.5
451
Tumor
0.5
415
Tumor
0.5
258
Normal
0.4
1014
Normal
0.4
964
Normal
0.4
228
Normal
0.4
1042
Normal
0.4
966
Normal
0.4
526
Normal
0.4
136
Normal
0.4
261
Tumor
0.4
722
Normal
0.4
554
Normal
0.4
884
Normal
0.4
956
Normal
0.3
958
Normal
0.3
362
Normal
0.3
1028
Normal
0.3
214
Normal
0.3
727
Tumor
0.3
428
Normal
0.3
874
Normal
0.2
868
Normal
0.2
926
Normal
0.2
867
Tumor
0.2
627
Tumor
0.2
262
Normal
0.2
312
Normal
0.2
328
Normal
0.2
396
Normal
0.1
813
Tumor
0.1
737
Tumor
0.1
715
Tumor
0.1
146
Normal
0.1
852
Normal
0.1
741
Tumor
0.1
218
Normal
0.1
558
Normal
0.1
672
Normal
0.1
444
Normal
0.1
124
Normal
0.1
138
Normal
0.1
126
Normal
0.0
952
Normal
0.0
394
Normal
0.0
916
Normal
0.0
147
Tumor
0.0
721
Tumor
0.0
978
Normal
0.0
127
Tumor
0.0
434
Normal
0.0
435
Tumor
0.0
387
Tumor
0.0
513
Tumor
-0.1
778
Normal
-0.1
728
Normal
-0.1
268
Normal
-0.1
474
Normal
-0.1
188
Normal
-0.2
386
Normal
-0.2
857
Tumor
-0.2
478
Normal
-0.2
538
Normal
-0.2
123
Tumor
-0.2
131
Tumor
-0.2
968
Normal
-0.2
363
Tumor
-0.2
231
Tumor
-0.3
112
Tumor
-0.3
492
Normal
-0.3
192
Normal
-0.3
493
Tumor
-0.3
185
Tumor
-0.3
384
Normal
-0.3
392
Normal
-0.3
814
Normal
-0.4
393
Tumor
-0.4
557
Tumor
-0.4
271
Tumor
-0.4
461
Tumor
-0.5
351
Tumor
-0.5
391
Tumor
-0.5
224
Normal
-0.5
365
Tumor
-0.5
341
Tumor
-0.6
883
Tumor
-0.6
873
Tumor
-0.6
498
Normal
-0.6
943
Tumor
-0.7
171
Tumor
-0.7
267
Tumor
-0.7
217
Tumor
-0.7
661
Tumor
-0.7
823
Tumor
-0.7
1043
Tumor
-0.7
431
Tumor
-0.7
213
Tumor
-0.8
257
Tumor
-0.8
567
Tumor
-0.8
1041
Tumor
-0.8
536
Normal
-0.8
423
Tumor
-0.9
477
Tumor
-0.9
571
Tumor
-0.9
861
Tumor
-0.9
881
Tumor
-0.9
357
Tumor
-0.9
491
Tumor
-0.9
361
Tumor
-0.9
563
Tumor
-0.9
227
Tumor
-0.9
965
Tumor
-0.9
343
Tumor
-1.0
297
Tumor
-1.0
447
Tumor
-1.0
471
Tumor
-1.0
877
Tumor
-1.0
983
Tumor
-1.0
755
Tumor
-1.0
615
Tumor
-1.0
524
Normal
-1.0
695
Tumor
-1.0
785
Tumor
-1.0
553
Tumor
-1.1
981
Tumor
-1.1
443
Tumor
-1.1
187
Tumor
-1.1
713
Tumor
-1.1
353
Tumor
-1.1
745
Tumor
-1.1
195
Tumor
-1.1
665
Tumor
-1.2
1013
Tumor
-1.2
743
Tumor
-1.2
483
Tumor
-1.2
327
Tumor
-1.2
113
Tumor
-1.3
963
Tumor
-1.3
967
Tumor
-1.3
473
Tumor
-1.3
125
Tumor
-1.3
635
Tumor
-1.3
145
Tumor
-1.3
411
Tumor
-1.3
617
Tumor
-1.3
355
Tumor
-1.4
917
Tumor
-1.4
1031
Tumor
-1.4
1015
Tumor
-1.4
191
Tumor
-1.4
283
Tumor
-1.4
161
Tumor
-1.4
421
Tumor
-1.4
527
Tumor
-1.4
221
Tumor
-1.4
923
Tumor
-1.4
953
Tumor
-1.5
647
Tumor
-1.5
671
Tumor
-1.5
1045
Tumor
-1.5
663
Tumor
-1.5
975
Tumor
-1.5
951
Tumor
-1.6
925
Tumor
-1.6
285
Tumor
-1.6
913
Tumor
-1.6
685
Tumor
-1.6
141
Tumor
-1.6
1025
Tumor
-1.6
367
Tumor
-1.6
223
Tumor
-1.6
277
Tumor
-1.7
1021
Tumor
-1.7
311
Tumor
-1.7
921
Tumor
-1.7
487
Tumor
-1.7
724
Normal
-1.8
465
Tumor
-1.8
383
Tumor
-1.8
425
Tumor
-1.8
851
Tumor
-1.8
137
Tumor
-1.8
865
Tumor
-1.8
545
Tumor
-1.9
331
Tumor
-1.9
641
Tumor
-1.9
497
Tumor
-1.9
211
Tumor
-1.9
697
Tumor
-1.9
937
Tumor
-1.9
413
Tumor
-2.0
573
Tumor
-2.0
815
Tumor
-2.0
313
Tumor
-2.0
395
Tumor
-2.0
385
Tumor
-2.0
375
Tumor
-2.1
957
Tumor
-2.1
463
Tumor
-2.1
817
Tumor
-2.1
427
Tumor
-2.2
1027
Tumor
-2.2
533
Tumor
-2.2
135
Tumor
-2.3
455
Tumor
-2.3
537
Tumor
-2.3
535
Tumor
-2.5
467
Tumor
-2.5
525
Tumor
-2.6
523
Tumor
-2.7
517
Tumor
-2.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
