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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OSBPL9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
204.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
124.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
104.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
99.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
98.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
89.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
88.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
88.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
87.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
83.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
81.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
75.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
75.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
72.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
71.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
70.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
69.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
64.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
63.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
63.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
63.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
63.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
62.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
62.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
62.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
62.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
61.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
60.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
60.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
59.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
59.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
59.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
58.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
58.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
56.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
56.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
55.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
55.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
55.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
52.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
51.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
51.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
50.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
49.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
48.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
47.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
47.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
47.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
47.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
46.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
46.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
45.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
45.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
43.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
42.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
41.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
41.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
41.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
41.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
41.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
40.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
40.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
40.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
39.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
39.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
38.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
38.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
38.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
37.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
37.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
36.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
36.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
36.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
36.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
35.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
35.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
35.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
35.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
35.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
34.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
34.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
33.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
33.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
33.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
33.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
33.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
33.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
33.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
32.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
32.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
32.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
32.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
31.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
31.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
31.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
31.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
31.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
30.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
30.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
29.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
29.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
29.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
29.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
29.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
29.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
29.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
28.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
28.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
28.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
28.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
28.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
27.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
26.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
26.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
26.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
26.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
26.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
26.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
25.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
25.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
25.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
25.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
25.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
24.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
24.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
24.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
24.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
23.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
23.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
23.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
22.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
22.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
22.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
22.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
22.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
21.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
21.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
21.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
21.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
21.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
20.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
20.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
20.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
20.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
20.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
20.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
18.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
18.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
18.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
18.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
18.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
18.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
17.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
17.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
17.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
17.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
16.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
16.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
15.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
15.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
15.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
14.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
14.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
14.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
14.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
14.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
14.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
13.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OSBPL9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.2
Number of samples
231
Samples
Sample
Description
TPM
DO45259
0 years, male, NA, stage:3, alive, 330 days
113.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
98.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
75.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
74.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
72.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
72.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
71.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
71.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
69.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
69.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
69.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
68.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
68.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
67.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
67.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
65.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
65.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
65.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
62.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
61.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
61.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
59.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
59.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
58.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
58.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
55.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
55.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
54.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
54.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
51.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
50.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
50.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
49.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
48.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
48.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
48.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
47.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
47.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
46.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
45.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
45.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
45.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
44.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
44.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
43.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
42.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
41.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
41.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
41.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
40.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
40.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
39.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
38.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
38.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
38.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
38.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
38.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
38.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
38.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
38.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
37.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
37.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
37.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
37.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
37.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
37.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
37.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
36.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
36.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
35.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
35.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
34.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
34.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
34.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
34.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
34.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
34.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
33.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
33.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
33.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
32.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
32.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
32.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
31.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
31.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
31.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
31.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
31.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
30.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
30.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
30.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
30.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
30.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
30.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
29.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
29.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
29.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
29.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
29.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
28.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
28.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
28.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
27.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
27.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
27.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
27.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
26.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
26.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
26.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
25.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
25.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
25.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
24.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
24.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
24.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
24.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
23.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
22.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
22.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
22.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
21.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
21.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
21.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
21.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
20.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
20.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
20.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
19.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
19.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
18.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
17.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
17.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
16.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
13.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
0.7
713
Tumor
0.6
491
Tumor
0.6
125
Tumor
0.6
745
Tumor
0.5
943
Tumor
0.5
957
Tumor
0.5
523
Tumor
0.5
865
Tumor
0.5
695
Tumor
0.5
545
Tumor
0.4
487
Tumor
0.4
567
Tumor
0.4
283
Tumor
0.4
327
Tumor
0.4
1021
Tumor
0.4
515
Tumor
0.4
395
Tumor
0.4
573
Tumor
0.4
746
Normal
0.4
571
Tumor
0.4
533
Tumor
0.4
777
Tumor
0.4
128
Normal
0.3
952
Normal
0.3
755
Tumor
0.3
365
Tumor
0.3
1015
Tumor
0.3
615
Tumor
0.3
786
Normal
0.3
868
Normal
0.3
145
Tumor
0.3
866
Normal
0.3
938
Normal
0.3
137
Tumor
0.3
527
Tumor
0.3
738
Normal
0.3
1025
Tumor
0.3
518
Normal
0.3
616
Normal
0.2
862
Normal
0.2
816
Normal
0.2
918
Normal
0.2
944
Normal
0.2
126
Normal
0.2
824
Normal
0.2
913
Tumor
0.2
968
Normal
0.2
425
Tumor
0.2
513
Tumor
0.2
737
Tumor
0.2
462
Normal
0.2
852
Normal
0.2
663
Tumor
0.2
925
Tumor
0.2
981
Tumor
0.2
558
Normal
0.2
564
Normal
0.2
474
Normal
0.2
228
Normal
0.2
467
Tumor
0.2
536
Normal
0.2
546
Normal
0.2
535
Tumor
0.2
967
Tumor
0.2
956
Normal
0.2
563
Tumor
0.2
568
Normal
0.2
778
Normal
0.2
278
Normal
0.2
223
Tumor
0.2
366
Normal
0.2
924
Normal
0.2
497
Tumor
0.2
148
Normal
0.2
212
Normal
0.2
864
Normal
0.2
572
Normal
0.2
628
Normal
0.2
466
Normal
0.2
311
Tumor
0.2
355
Tumor
0.2
1016
Normal
0.2
1013
Tumor
0.2
376
Normal
0.2
742
Normal
0.2
1027
Tumor
0.2
138
Normal
0.2
1022
Normal
0.2
627
Tumor
0.2
132
Normal
0.2
161
Tumor
0.2
224
Normal
0.2
472
Normal
0.2
353
Tumor
0.2
953
Tumor
0.2
358
Normal
0.1
528
Normal
0.1
922
Normal
0.1
964
Normal
0.1
362
Normal
0.1
851
Tumor
0.1
557
Tumor
0.1
367
Tumor
0.1
756
Normal
0.1
136
Normal
0.1
412
Normal
0.1
954
Normal
0.1
618
Normal
0.1
882
Normal
0.1
448
Normal
0.1
1046
Normal
0.1
721
Tumor
0.1
574
Normal
0.1
257
Tumor
0.1
1028
Normal
0.1
728
Normal
0.1
484
Normal
0.1
823
Tumor
0.1
958
Normal
0.1
916
Normal
0.1
525
Tumor
0.1
261
Tumor
0.1
172
Normal
0.1
923
Tumor
0.1
162
Normal
0.1
427
Tumor
0.1
461
Tumor
0.1
874
Normal
0.1
716
Normal
0.1
686
Normal
0.1
447
Tumor
0.1
723
Tumor
0.1
863
Tumor
0.1
1041
Tumor
0.1
465
Tumor
0.1
966
Normal
0.1
878
Normal
0.1
284
Normal
0.1
648
Normal
0.1
534
Normal
0.1
1026
Normal
0.1
538
Normal
0.1
124
Normal
0.1
113
Tumor
0.1
188
Normal
0.1
286
Normal
0.1
277
Tumor
0.1
332
Normal
0.1
647
Tumor
0.1
955
Tumor
0.1
912
Normal
0.1
141
Tumor
0.1
554
Normal
0.1
494
Normal
0.1
884
Normal
0.1
926
Normal
0.1
131
Tumor
0.1
978
Normal
0.1
914
Normal
0.1
492
Normal
0.1
617
Tumor
0.1
214
Normal
0.1
186
Normal
0.1
1044
Normal
0.1
111
Normal
0.1
982
Normal
0.1
698
Normal
0.1
344
Normal
0.1
375
Tumor
0.1
714
Normal
0.1
436
Normal
0.1
356
Normal
0.1
411
Tumor
0.0
114
Normal
0.0
493
Tumor
0.0
858
Normal
0.0
1032
Normal
0.0
857
Tumor
0.0
697
Tumor
0.0
722
Normal
0.0
526
Normal
0.0
314
Normal
0.0
741
Tumor
0.0
1045
Tumor
0.0
416
Normal
0.0
744
Normal
0.0
666
Normal
0.0
368
Normal
0.0
262
Normal
0.0
455
Tumor
0.0
516
Normal
0.0
421
Tumor
0.0
341
Tumor
0.0
984
Normal
0.0
696
Normal
0.0
343
Tumor
0.0
272
Normal
0.0
937
Tumor
0.0
662
Normal
0.0
976
Normal
0.0
298
Normal
0.0
422
Normal
0.0
672
Normal
0.0
383
Tumor
0.0
267
Tumor
0.0
211
Tumor
0.0
423
Tumor
0.0
915
Tumor
0.0
498
Normal
0.0
361
Tumor
0.0
818
Normal
0.0
384
Normal
0.0
394
Normal
0.0
232
Normal
0.0
1014
Normal
0.0
661
Tumor
0.0
258
Normal
0.0
364
Normal
0.0
664
Normal
0.0
813
Tumor
0.0
488
Normal
0.0
218
Normal
0.0
142
Normal
0.0
482
Normal
0.0
468
Normal
0.0
524
Normal
0.0
312
Normal
0.0
196
Normal
0.0
636
Normal
0.0
464
Normal
0.0
514
Normal
0.0
328
Normal
0.0
814
Normal
0.0
396
Normal
0.0
222
Normal
0.0
861
Tumor
0.0
456
Normal
0.0
195
Tumor
0.0
342
Normal
-0.1
213
Tumor
-0.1
187
Tumor
-0.1
392
Normal
-0.1
146
Normal
-0.1
642
Normal
-0.1
883
Tumor
-0.1
1042
Normal
-0.1
685
Tumor
-0.1
817
Tumor
-0.1
917
Tumor
-0.1
414
Normal
-0.1
313
Tumor
-0.1
785
Tumor
-0.1
352
Normal
-0.1
477
Tumor
-0.1
388
Normal
-0.1
191
Tumor
-0.1
231
Tumor
-0.1
452
Normal
-0.1
432
Normal
-0.1
354
Normal
-0.1
921
Tumor
-0.1
387
Tumor
-0.1
473
Tumor
-0.1
297
Tumor
-0.1
478
Normal
-0.1
451
Tumor
-0.1
951
Tumor
-0.1
413
Tumor
-0.1
463
Tumor
-0.1
386
Normal
-0.1
483
Tumor
-0.1
424
Normal
-0.1
268
Normal
-0.1
873
Tumor
-0.1
185
Tumor
-0.1
444
Normal
-0.1
727
Tumor
-0.2
363
Tumor
-0.2
428
Normal
-0.2
426
Normal
-0.2
415
Tumor
-0.2
881
Tumor
-0.2
965
Tumor
-0.2
112
Tumor
-0.2
391
Tumor
-0.2
227
Tumor
-0.2
285
Tumor
-0.2
446
Normal
-0.2
393
Tumor
-0.2
975
Tumor
-0.2
123
Tumor
-0.2
192
Normal
-0.2
911
Tumor
-0.2
665
Tumor
-0.2
724
Normal
-0.2
977
Tumor
-0.2
434
Normal
-0.3
135
Tumor
-0.3
481
Tumor
-0.3
867
Tumor
-0.3
217
Tumor
-0.3
815
Tumor
-0.3
431
Tumor
-0.3
357
Tumor
-0.3
471
Tumor
-0.3
433
Tumor
-0.3
147
Tumor
-0.3
1043
Tumor
-0.3
1031
Tumor
-0.3
743
Tumor
-0.4
963
Tumor
-0.4
221
Tumor
-0.4
983
Tumor
-0.4
127
Tumor
-0.4
271
Tumor
-0.4
671
Tumor
-0.4
641
Tumor
-0.4
435
Tumor
-0.4
443
Tumor
-0.4
171
Tumor
-0.4
553
Tumor
-0.5
877
Tumor
-0.5
635
Tumor
-0.5
445
Tumor
-0.5
517
Tumor
-0.5
351
Tumor
-0.5
331
Tumor
-0.6
385
Tumor
-0.6
715
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
