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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R8 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
33.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
28.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
25.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
23.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
23.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
22.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
22.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
18.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
17.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
17.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
17.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
17.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
17.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
15.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
15.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
15.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
15.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
14.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
12.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
12.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
12.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
11.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
10.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
9.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
7.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
6.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
2.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R8 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
24.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
24.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
23.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
23.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
22.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
18.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
17.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
17.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
17.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
17.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
16.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
15.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
15.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
15.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
12.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
12.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
11.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
11.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
11.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
10.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
10.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
9.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
9.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
6.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.0
951
Tumor
0.8
355
Tumor
0.7
425
Tumor
0.7
473
Tumor
0.7
413
Tumor
0.7
533
Tumor
0.6
727
Tumor
0.6
112
Tumor
0.6
977
Tumor
0.6
487
Tumor
0.6
545
Tumor
0.6
695
Tumor
0.5
743
Tumor
0.5
131
Tumor
0.5
431
Tumor
0.5
967
Tumor
0.4
367
Tumor
0.4
865
Tumor
0.4
737
Tumor
0.4
463
Tumor
0.4
923
Tumor
0.4
527
Tumor
0.4
1021
Tumor
0.4
953
Tumor
0.4
777
Tumor
0.4
497
Tumor
0.4
975
Tumor
0.4
1031
Tumor
0.3
123
Tumor
0.3
814
Normal
0.3
331
Tumor
0.3
571
Tumor
0.3
351
Tumor
0.3
685
Tumor
0.3
477
Tumor
0.3
467
Tumor
0.3
661
Tumor
0.3
553
Tumor
0.3
813
Tumor
0.3
1045
Tumor
0.3
943
Tumor
0.3
557
Tumor
0.3
1013
Tumor
0.3
455
Tumor
0.3
385
Tumor
0.3
921
Tumor
0.3
741
Tumor
0.3
535
Tumor
0.3
391
Tumor
0.3
573
Tumor
0.3
427
Tumor
0.3
513
Tumor
0.3
523
Tumor
0.3
715
Tumor
0.3
525
Tumor
0.3
755
Tumor
0.3
724
Normal
0.3
937
Tumor
0.2
411
Tumor
0.2
663
Tumor
0.2
141
Tumor
0.2
465
Tumor
0.2
515
Tumor
0.2
817
Tumor
0.2
387
Tumor
0.2
697
Tumor
0.2
113
Tumor
0.2
447
Tumor
0.2
957
Tumor
0.2
375
Tumor
0.2
471
Tumor
0.2
461
Tumor
0.2
443
Tumor
0.2
161
Tumor
0.2
1042
Normal
0.2
313
Tumor
0.2
881
Tumor
0.2
221
Tumor
0.2
1041
Tumor
0.2
341
Tumor
0.2
517
Tumor
0.2
877
Tumor
0.2
383
Tumor
0.2
433
Tumor
0.2
536
Normal
0.2
563
Tumor
0.2
537
Tumor
0.2
863
Tumor
0.2
211
Tumor
0.2
277
Tumor
0.2
361
Tumor
0.2
483
Tumor
0.1
944
Normal
0.1
883
Tumor
0.1
1025
Tumor
0.1
498
Normal
0.1
365
Tumor
0.1
135
Tumor
0.1
647
Tumor
0.1
311
Tumor
0.1
478
Normal
0.1
925
Tumor
0.1
451
Tumor
0.1
567
Tumor
0.1
283
Tumor
0.1
493
Tumor
0.1
954
Normal
0.1
955
Tumor
0.1
1015
Tumor
0.1
785
Tumor
0.1
357
Tumor
0.1
267
Tumor
0.1
271
Tumor
0.1
867
Tumor
0.1
171
Tumor
0.1
665
Tumor
0.1
983
Tumor
0.1
878
Normal
0.1
343
Tumor
0.1
915
Tumor
0.1
861
Tumor
0.1
981
Tumor
0.1
662
Normal
0.1
423
Tumor
0.1
1016
Normal
0.1
1027
Tumor
0.1
671
Tumor
0.1
882
Normal
0.1
395
Tumor
0.1
481
Tumor
0.1
1032
Normal
0.1
231
Tumor
0.1
482
Normal
0.1
491
Tumor
0.1
756
Normal
0.1
554
Normal
0.1
217
Tumor
0.0
384
Normal
0.0
516
Normal
0.0
192
Normal
0.0
261
Tumor
0.0
858
Normal
0.0
421
Tumor
0.0
213
Tumor
0.0
963
Tumor
0.0
815
Tumor
0.0
721
Tumor
0.0
524
Normal
0.0
297
Tumor
0.0
1046
Normal
0.0
327
Tumor
0.0
125
Tumor
0.0
127
Tumor
0.0
415
Tumor
0.0
918
Normal
0.0
714
Normal
0.0
534
Normal
0.0
142
Normal
0.0
298
Normal
0.0
984
Normal
0.0
716
Normal
0.0
938
Normal
0.0
1026
Normal
0.0
284
Normal
0.0
444
Normal
0.0
641
Tumor
0.0
696
Normal
0.0
982
Normal
0.0
664
Normal
0.0
224
Normal
0.0
488
Normal
0.0
462
Normal
0.0
966
Normal
0.0
912
Normal
0.0
823
Tumor
0.0
445
Tumor
0.0
484
Normal
0.0
1022
Normal
0.0
922
Normal
0.0
518
Normal
0.0
474
Normal
0.0
285
Tumor
0.0
227
Tumor
0.0
617
Tumor
0.0
884
Normal
0.0
362
Normal
0.0
363
Tumor
0.0
558
Normal
0.0
137
Tumor
0.0
546
Normal
0.0
686
Normal
0.0
328
Normal
0.0
926
Normal
0.0
952
Normal
0.0
913
Tumor
0.0
468
Normal
0.0
978
Normal
0.0
968
Normal
0.0
1014
Normal
0.0
466
Normal
0.0
698
Normal
0.0
212
Normal
-0.1
1044
Normal
-0.1
538
Normal
-0.1
472
Normal
-0.1
492
Normal
-0.1
366
Normal
-0.1
917
Tumor
-0.1
924
Normal
-0.1
976
Normal
-0.1
958
Normal
-0.1
353
Tumor
-0.1
514
Normal
-0.1
873
Tumor
-0.1
722
Normal
-0.1
528
Normal
-0.1
648
Normal
-0.1
148
Normal
-0.1
185
Tumor
-0.1
448
Normal
-0.1
435
Tumor
-0.1
666
Normal
-0.1
713
Tumor
-0.1
412
Normal
-0.1
232
Normal
-0.1
824
Normal
-0.1
268
Normal
-0.1
195
Tumor
-0.1
1028
Normal
-0.1
857
Tumor
-0.1
396
Normal
-0.1
635
Tumor
-0.1
286
Normal
-0.1
864
Normal
-0.1
862
Normal
-0.1
526
Normal
-0.1
434
Normal
-0.1
364
Normal
-0.1
778
Normal
-0.1
111
Normal
-0.1
786
Normal
-0.1
746
Normal
-0.1
916
Normal
-0.1
376
Normal
-0.1
818
Normal
-0.1
852
Normal
-0.1
368
Normal
-0.1
446
Normal
-0.1
672
Normal
-0.1
964
Normal
-0.1
162
Normal
-0.1
416
Normal
-0.1
278
Normal
-0.1
272
Normal
-0.1
257
Tumor
-0.1
628
Normal
-0.1
866
Normal
-0.1
464
Normal
-0.1
262
Normal
-0.1
436
Normal
-0.1
738
Normal
-0.1
911
Tumor
-0.1
1043
Tumor
-0.2
723
Tumor
-0.2
914
Normal
-0.2
744
Normal
-0.2
456
Normal
-0.2
126
Normal
-0.2
312
Normal
-0.2
188
Normal
-0.2
258
Normal
-0.2
187
Tumor
-0.2
572
Normal
-0.2
223
Tumor
-0.2
352
Normal
-0.2
851
Tumor
-0.2
228
Normal
-0.2
574
Normal
-0.2
742
Normal
-0.2
114
Normal
-0.2
816
Normal
-0.2
124
Normal
-0.2
728
Normal
-0.2
388
Normal
-0.2
627
Tumor
-0.2
615
Tumor
-0.2
874
Normal
-0.2
494
Normal
-0.2
394
Normal
-0.2
132
Normal
-0.2
424
Normal
-0.2
356
Normal
-0.2
868
Normal
-0.2
172
Normal
-0.2
222
Normal
-0.2
745
Tumor
-0.2
191
Tumor
-0.2
354
Normal
-0.2
196
Normal
-0.2
564
Normal
-0.3
386
Normal
-0.3
392
Normal
-0.3
956
Normal
-0.3
422
Normal
-0.3
146
Normal
-0.3
344
Normal
-0.3
128
Normal
-0.3
214
Normal
-0.3
432
Normal
-0.3
568
Normal
-0.3
314
Normal
-0.3
618
Normal
-0.3
186
Normal
-0.3
147
Tumor
-0.3
428
Normal
-0.3
452
Normal
-0.3
636
Normal
-0.3
138
Normal
-0.3
218
Normal
-0.3
136
Normal
-0.3
616
Normal
-0.3
393
Tumor
-0.3
426
Normal
-0.3
642
Normal
-0.4
145
Tumor
-0.4
342
Normal
-0.4
414
Normal
-0.4
358
Normal
-0.4
332
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
