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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NENF is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
79.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
247.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
235.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
231.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
228.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
222.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
205.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
200.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
185.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
182.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
172.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
172.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
170.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
164.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
163.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
161.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
159.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
158.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
157.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
156.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
154.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
153.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
153.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
151.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
149.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
149.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
149.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
147.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
146.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
144.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
143.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
143.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
142.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
139.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
139.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
137.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
136.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
135.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
132.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
132.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
129.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
128.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
128.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
127.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
126.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
124.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
124.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
124.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
123.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
123.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
123.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
122.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
121.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
121.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
120.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
119.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
119.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
118.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
118.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
116.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
116.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
116.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
115.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
115.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
114.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
113.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
111.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
111.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
110.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
108.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
107.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
107.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
107.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
106.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
106.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
106.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
105.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
105.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
105.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
105.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
104.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
104.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
103.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
103.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
103.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
102.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
102.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
102.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
101.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
99.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
99.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
99.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
99.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
99.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
98.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
98.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
98.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
97.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
97.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
97.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
96.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
96.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
95.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
95.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
95.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
95.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
95.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
95.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
95.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
94.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
94.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
94.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
93.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
93.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
93.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
92.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
92.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
92.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
91.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
91.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
91.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
90.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
90.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
90.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
90.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
89.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
89.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
89.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
88.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
88.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
88.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
88.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
86.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
86.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
86.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
86.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
85.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
85.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
84.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
84.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
83.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
83.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
83.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
83.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
82.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
82.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
81.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
81.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
81.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
80.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
80.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
80.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
80.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
79.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
79.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
79.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
79.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
78.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
78.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
78.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
78.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
77.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
77.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
77.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
76.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
76.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
76.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
76.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
76.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
76.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
75.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
75.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
75.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
75.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
74.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
74.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
73.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
72.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
71.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
70.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
70.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
70.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
70.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
70.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
70.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
69.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
69.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
69.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
69.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
68.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
68.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
68.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
68.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
68.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
67.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
67.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
67.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
66.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
66.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
66.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
66.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
66.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
66.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
66.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
66.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
66.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
65.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
65.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
65.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
65.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
65.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
65.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
65.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
65.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
64.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
64.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
64.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
62.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
62.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
62.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
62.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
62.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
62.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
62.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
61.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
61.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
61.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
60.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
60.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
60.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
60.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
60.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
59.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
59.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
59.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
59.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
59.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
59.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
59.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
58.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
58.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
57.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
56.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
56.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
56.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
55.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
55.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
55.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
55.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
55.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
54.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
54.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
54.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
54.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
53.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
52.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
52.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
51.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
51.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
51.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
50.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
50.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
50.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
50.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
50.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
48.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
48.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
48.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
48.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
48.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
48.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
46.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
46.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
46.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
46.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
45.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
45.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
45.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
45.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
45.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
45.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
45.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
44.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
44.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
43.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
43.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
43.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
43.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
43.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
42.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
42.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
42.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
42.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
41.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
41.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
41.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
40.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
40.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
40.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
40.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
40.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
39.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
39.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
38.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
38.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
38.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
38.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
38.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
37.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
37.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
37.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
36.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
35.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
34.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
34.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
34.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
32.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
31.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
30.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
30.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
30.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
28.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
27.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
27.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NENF is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.6
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
341.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
210.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
196.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
193.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
191.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
182.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
163.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
155.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
154.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
149.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
144.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
138.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
134.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
130.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
128.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
124.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
122.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
122.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
120.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
118.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
118.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
115.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
115.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
114.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
113.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
110.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
109.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
108.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
106.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
105.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
105.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
104.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
104.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
104.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
99.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
99.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
99.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
97.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
97.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
97.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
97.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
97.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
97.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
96.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
93.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
92.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
92.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
91.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
89.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
88.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
87.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
86.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
86.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
84.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
84.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
82.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
82.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
81.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
80.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
78.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
78.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
78.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
77.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
76.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
76.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
76.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
76.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
74.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
74.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
73.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
72.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
72.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
71.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
71.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
70.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
70.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
70.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
69.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
69.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
69.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
68.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
67.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
67.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
66.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
66.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
66.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
66.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
65.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
65.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
64.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
64.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
63.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
63.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
61.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
61.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
61.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
60.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
60.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
60.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
60.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
59.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
59.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
59.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
57.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
56.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
56.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
56.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
56.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
55.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
55.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
55.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
55.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
55.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
53.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
53.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
53.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
53.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
53.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
53.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
52.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
52.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
52.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
52.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
51.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
51.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
51.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
51.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
50.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
50.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
50.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
50.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
49.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
49.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
48.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
48.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
48.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
48.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
47.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
47.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
47.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
46.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
46.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
46.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
46.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
46.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
45.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
45.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
45.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
44.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
44.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
44.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
44.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
43.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
43.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
42.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
42.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
41.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
40.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
40.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
40.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
39.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
39.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
38.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
37.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
37.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
37.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
36.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
36.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
36.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
36.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
36.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
35.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
35.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
35.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
35.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
34.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
34.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
34.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
34.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
34.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
33.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
33.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
32.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
32.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
32.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
31.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
29.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
29.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
29.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
28.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
28.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
28.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
27.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
27.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
25.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
24.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
24.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
20.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
19.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
18.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.5
863
Tumor
1.3
445
Tumor
1.3
131
Tumor
1.2
915
Tumor
1.2
857
Tumor
1.2
481
Tumor
1.2
357
Tumor
1.1
523
Tumor
1.1
1013
Tumor
1.0
647
Tumor
1.0
527
Tumor
1.0
1043
Tumor
1.0
923
Tumor
0.9
777
Tumor
0.9
1027
Tumor
0.9
147
Tumor
0.9
963
Tumor
0.9
953
Tumor
0.9
393
Tumor
0.8
977
Tumor
0.8
1021
Tumor
0.8
975
Tumor
0.8
697
Tumor
0.8
721
Tumor
0.7
125
Tumor
0.7
865
Tumor
0.7
741
Tumor
0.7
571
Tumor
0.6
277
Tumor
0.6
867
Tumor
0.6
411
Tumor
0.6
745
Tumor
0.6
473
Tumor
0.5
517
Tumor
0.5
724
Normal
0.5
1022
Normal
0.5
483
Tumor
0.5
881
Tumor
0.5
471
Tumor
0.5
533
Tumor
0.5
714
Normal
0.5
938
Normal
0.5
1032
Normal
0.5
755
Tumor
0.5
493
Tumor
0.5
494
Normal
0.5
1031
Tumor
0.4
484
Normal
0.4
911
Tumor
0.4
491
Tumor
0.4
944
Normal
0.4
257
Tumor
0.4
534
Normal
0.4
698
Normal
0.4
785
Tumor
0.4
515
Tumor
0.4
742
Normal
0.4
727
Tumor
0.3
488
Normal
0.3
723
Tumor
0.3
922
Normal
0.3
213
Tumor
0.3
952
Normal
0.3
981
Tumor
0.3
435
Tumor
0.3
984
Normal
0.3
955
Tumor
0.3
271
Tumor
0.3
554
Normal
0.3
716
Normal
0.3
1015
Tumor
0.3
1014
Normal
0.3
738
Normal
0.3
415
Tumor
0.2
958
Normal
0.2
463
Tumor
0.2
878
Normal
0.2
361
Tumor
0.2
127
Tumor
0.2
861
Tumor
0.2
572
Normal
0.2
431
Tumor
0.2
546
Normal
0.2
573
Tumor
0.2
448
Normal
0.2
433
Tumor
0.2
553
Tumor
0.2
267
Tumor
0.2
1044
Normal
0.2
648
Normal
0.2
918
Normal
0.2
737
Tumor
0.2
313
Tumor
0.2
412
Normal
0.2
283
Tumor
0.2
1046
Normal
0.2
514
Normal
0.2
862
Normal
0.2
722
Normal
0.1
968
Normal
0.1
686
Normal
0.1
557
Tumor
0.1
696
Normal
0.1
525
Tumor
0.1
868
Normal
0.1
261
Tumor
0.1
954
Normal
0.1
926
Normal
0.1
873
Tumor
0.1
912
Normal
0.1
978
Normal
0.1
746
Normal
0.1
387
Tumor
0.1
728
Normal
0.1
477
Tumor
0.1
924
Normal
0.1
852
Normal
0.1
497
Tumor
0.1
943
Tumor
0.1
786
Normal
0.1
426
Normal
0.1
186
Normal
0.1
211
Tumor
0.1
538
Normal
0.1
492
Normal
0.1
355
Tumor
0.1
964
Normal
0.0
112
Tumor
0.0
482
Normal
0.0
1028
Normal
0.0
212
Normal
0.0
462
Normal
0.0
466
Normal
0.0
518
Normal
0.0
778
Normal
0.0
756
Normal
0.0
558
Normal
0.0
616
Normal
0.0
1041
Tumor
0.0
536
Normal
0.0
956
Normal
0.0
332
Normal
0.0
528
Normal
0.0
1016
Normal
0.0
227
Tumor
0.0
568
Normal
0.0
916
Normal
0.0
823
Tumor
0.0
966
Normal
0.0
715
Tumor
0.0
864
Normal
0.0
685
Tumor
0.0
452
Normal
0.0
364
Normal
0.0
447
Tumor
0.0
982
Normal
0.0
487
Tumor
0.0
516
Normal
0.0
472
Normal
0.0
636
Normal
0.0
976
Normal
0.0
816
Normal
0.0
866
Normal
0.0
744
Normal
-0.1
221
Tumor
-0.1
526
Normal
-0.1
628
Normal
-0.1
195
Tumor
-0.1
951
Tumor
-0.1
196
Normal
-0.1
884
Normal
-0.1
228
Normal
-0.1
128
Normal
-0.1
298
Normal
-0.1
327
Tumor
-0.1
474
Normal
-0.1
284
Normal
-0.1
356
Normal
-0.1
478
Normal
-0.1
882
Normal
-0.1
498
Normal
-0.1
278
Normal
-0.1
564
Normal
-0.1
672
Normal
-0.1
913
Tumor
-0.1
172
Normal
-0.1
461
Tumor
-0.1
1026
Normal
-0.1
328
Normal
-0.1
817
Tumor
-0.1
286
Normal
-0.1
354
Normal
-0.1
813
Tumor
-0.2
663
Tumor
-0.2
524
Normal
-0.2
148
Normal
-0.2
824
Normal
-0.2
921
Tumor
-0.2
224
Normal
-0.2
368
Normal
-0.2
917
Tumor
-0.2
185
Tumor
-0.2
232
Normal
-0.2
162
Normal
-0.2
814
Normal
-0.2
664
Normal
-0.2
965
Tumor
-0.2
376
Normal
-0.2
665
Tumor
-0.2
314
Normal
-0.2
137
Tumor
-0.2
142
Normal
-0.2
635
Tumor
-0.2
191
Tumor
-0.2
1045
Tumor
-0.2
662
Normal
-0.2
615
Tumor
-0.2
114
Normal
-0.2
342
Normal
-0.2
436
Normal
-0.2
111
Normal
-0.2
465
Tumor
-0.2
695
Tumor
-0.2
161
Tumor
-0.2
388
Normal
-0.2
877
Tumor
-0.3
618
Normal
-0.3
231
Tumor
-0.3
362
Normal
-0.3
925
Tumor
-0.3
574
Normal
-0.3
258
Normal
-0.3
358
Normal
-0.3
858
Normal
-0.3
464
Normal
-0.3
222
Normal
-0.3
214
Normal
-0.3
513
Tumor
-0.3
451
Tumor
-0.3
818
Normal
-0.3
422
Normal
-0.3
352
Normal
-0.3
1042
Normal
-0.3
446
Normal
-0.3
132
Normal
-0.3
331
Tumor
-0.3
642
Normal
-0.3
312
Normal
-0.3
416
Normal
-0.3
456
Normal
-0.3
363
Tumor
-0.3
851
Tumor
-0.3
171
Tumor
-0.3
424
Normal
-0.3
414
Normal
-0.3
545
Tumor
-0.3
937
Tumor
-0.3
443
Tumor
-0.4
914
Normal
-0.4
394
Normal
-0.4
262
Normal
-0.4
124
Normal
-0.4
272
Normal
-0.4
468
Normal
-0.4
218
Normal
-0.4
641
Tumor
-0.4
743
Tumor
-0.4
563
Tumor
-0.4
297
Tumor
-0.4
366
Normal
-0.4
187
Tumor
-0.4
874
Normal
-0.4
455
Tumor
-0.4
136
Normal
-0.4
883
Tumor
-0.4
432
Normal
-0.4
537
Tumor
-0.5
425
Tumor
-0.5
268
Normal
-0.5
467
Tumor
-0.5
396
Normal
-0.5
392
Normal
-0.5
344
Normal
-0.5
217
Tumor
-0.5
343
Tumor
-0.5
135
Tumor
-0.5
421
Tumor
-0.5
567
Tumor
-0.5
341
Tumor
-0.5
666
Normal
-0.5
428
Normal
-0.5
375
Tumor
-0.5
365
Tumor
-0.5
384
Normal
-0.6
967
Tumor
-0.6
223
Tumor
-0.6
617
Tumor
-0.6
434
Normal
-0.6
385
Tumor
-0.6
123
Tumor
-0.6
983
Tumor
-0.6
311
Tumor
-0.6
138
Normal
-0.6
444
Normal
-0.6
423
Tumor
-0.6
535
Tumor
-0.6
627
Tumor
-0.6
353
Tumor
-0.7
285
Tumor
-0.7
351
Tumor
-0.7
188
Normal
-0.7
126
Normal
-0.7
145
Tumor
-0.7
113
Tumor
-0.7
671
Tumor
-0.7
713
Tumor
-0.8
192
Normal
-0.8
661
Tumor
-0.8
141
Tumor
-0.8
146
Normal
-0.8
386
Normal
-0.8
427
Tumor
-0.8
391
Tumor
-0.8
815
Tumor
-0.8
1025
Tumor
-0.9
383
Tumor
-1.0
395
Tumor
-1.1
413
Tumor
-1.2
367
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
