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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STMN1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
82.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
537.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
479.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
445.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
419.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
418.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
368.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
361.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
340.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
316.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
311.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
304.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
300.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
291.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
287.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
286.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
278.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
266.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
265.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
258.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
236.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
236.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
233.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
225.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
218.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
218.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
215.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
214.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
213.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
210.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
209.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
208.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
192.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
189.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
188.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
187.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
182.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
179.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
176.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
171.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
165.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
165.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
163.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
161.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
159.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
159.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
159.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
155.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
154.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
152.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
150.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
148.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
147.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
146.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
146.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
146.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
146.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
142.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
141.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
139.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
138.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
138.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
137.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
136.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
134.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
131.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
128.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
127.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
126.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
126.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
125.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
125.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
123.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
123.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
123.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
120.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
120.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
119.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
116.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
115.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
114.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
113.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
112.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
111.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
111.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
110.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
109.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
107.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
107.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
106.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
106.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
106.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
105.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
104.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
104.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
104.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
102.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
101.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
101.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
100.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
100.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
99.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
98.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
95.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
95.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
95.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
93.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
93.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
92.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
91.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
91.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
89.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
89.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
89.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
88.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
87.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
87.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
87.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
86.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
84.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
83.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
81.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
80.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
78.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
77.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
76.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
76.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
76.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
76.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
75.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
75.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
75.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
74.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
74.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
73.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
73.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
72.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
72.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
72.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
70.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
70.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
70.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
70.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
69.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
69.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
69.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
68.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
68.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
67.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
66.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
66.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
65.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
65.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
65.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
65.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
64.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
63.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
62.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
62.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
62.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
62.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
61.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
61.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
61.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
60.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
60.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
59.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
59.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
59.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
58.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
58.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
58.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
57.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
56.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
56.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
55.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
55.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
55.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
55.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
54.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
53.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
53.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
53.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
53.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
52.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
51.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
51.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
51.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
50.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
50.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
50.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
49.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
49.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
49.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
49.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
49.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
48.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
48.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
47.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
47.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
46.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
45.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
44.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
44.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
44.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
44.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
43.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
43.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
43.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
43.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
43.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
42.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
41.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
40.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
40.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
39.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
39.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
38.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
38.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
38.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
38.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
38.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
38.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
38.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
38.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
38.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
37.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
37.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
37.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
37.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
37.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
37.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
36.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
36.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
35.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
34.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
34.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
33.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
33.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
32.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
32.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
31.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
31.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
31.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
30.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
30.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
30.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
29.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
29.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
29.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
29.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
28.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
28.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
28.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
28.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
27.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
26.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
26.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
26.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
26.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
25.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
24.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
24.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
24.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
24.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
24.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
24.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
23.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
22.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
22.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
21.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
21.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
21.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
21.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
21.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
21.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
21.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
21.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
20.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
20.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
20.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
20.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
19.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
18.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
18.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
15.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
14.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
13.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
13.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
13.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
11.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
10.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
9.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
STMN1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
65.6
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
222.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
208.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
205.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
201.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
200.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
190.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
189.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
185.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
178.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
178.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
177.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
177.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
174.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
173.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
169.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
167.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
163.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
161.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
159.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
158.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
157.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
156.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
148.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
145.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
145.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
139.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
135.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
133.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
128.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
125.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
125.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
124.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
123.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
121.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
117.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
116.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
114.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
113.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
110.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
107.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
105.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
105.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
105.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
101.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
100.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
98.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
96.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
95.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
92.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
92.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
90.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
88.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
87.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
86.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
86.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
85.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
84.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
84.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
83.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
83.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
82.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
82.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
81.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
81.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
81.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
81.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
80.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
80.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
78.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
78.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
78.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
77.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
77.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
77.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
74.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
73.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
72.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
72.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
71.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
71.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
71.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
70.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
69.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
69.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
68.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
68.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
67.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
65.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
65.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
65.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
64.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
62.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
62.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
60.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
60.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
60.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
59.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
57.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
57.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
57.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
57.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
56.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
55.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
55.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
54.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
54.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
52.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
52.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
52.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
51.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
51.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
51.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
51.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
50.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
50.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
50.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
50.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
49.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
49.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
48.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
47.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
46.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
46.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
45.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
44.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
43.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
42.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
42.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
42.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
42.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
42.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
39.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
39.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
39.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
38.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
38.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
38.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
38.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
38.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
37.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
36.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
35.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
35.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
34.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
34.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
34.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
34.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
33.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
33.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
32.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
32.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
32.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
32.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
31.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
31.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
31.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
29.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
29.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
28.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
28.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
28.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
28.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
27.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
27.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
27.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
27.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
26.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
25.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
25.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
24.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
22.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
22.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
21.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
20.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
17.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
17.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
17.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
14.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
14.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1013
Tumor
2.9
965
Tumor
2.3
695
Tumor
2.1
727
Tumor
2.1
283
Tumor
1.9
497
Tumor
1.8
355
Tumor
1.8
923
Tumor
1.7
865
Tumor
1.7
463
Tumor
1.7
487
Tumor
1.6
663
Tumor
1.5
493
Tumor
1.5
953
Tumor
1.4
661
Tumor
1.3
983
Tumor
1.3
351
Tumor
1.2
161
Tumor
1.2
571
Tumor
1.2
277
Tumor
1.2
525
Tumor
1.2
737
Tumor
1.2
943
Tumor
1.2
537
Tumor
1.1
285
Tumor
1.0
523
Tumor
1.0
131
Tumor
1.0
473
Tumor
1.0
743
Tumor
1.0
447
Tumor
1.0
814
Normal
1.0
545
Tumor
1.0
465
Tumor
0.9
313
Tumor
0.9
724
Normal
0.9
211
Tumor
0.9
877
Tumor
0.9
957
Tumor
0.9
967
Tumor
0.9
387
Tumor
0.8
951
Tumor
0.8
917
Tumor
0.8
861
Tumor
0.8
411
Tumor
0.8
357
Tumor
0.8
123
Tumor
0.8
431
Tumor
0.7
125
Tumor
0.7
883
Tumor
0.7
483
Tumor
0.7
873
Tumor
0.7
425
Tumor
0.7
813
Tumor
0.7
1027
Tumor
0.6
311
Tumor
0.6
385
Tumor
0.6
921
Tumor
0.6
517
Tumor
0.5
435
Tumor
0.5
491
Tumor
0.5
112
Tumor
0.5
527
Tumor
0.5
647
Tumor
0.5
966
Normal
0.5
963
Tumor
0.5
413
Tumor
0.5
741
Tumor
0.5
755
Tumor
0.5
341
Tumor
0.4
685
Tumor
0.4
141
Tumor
0.4
213
Tumor
0.4
231
Tumor
0.4
367
Tumor
0.4
171
Tumor
0.3
815
Tumor
0.3
977
Tumor
0.3
375
Tumor
0.3
363
Tumor
0.3
697
Tumor
0.3
343
Tumor
0.3
573
Tumor
0.3
851
Tumor
0.3
671
Tumor
0.3
567
Tumor
0.3
391
Tumor
0.3
535
Tumor
0.3
857
Tumor
0.2
492
Normal
0.2
823
Tumor
0.2
257
Tumor
0.2
1021
Tumor
0.2
223
Tumor
0.2
331
Tumor
0.2
498
Normal
0.2
445
Tumor
0.2
713
Tumor
0.1
1031
Tumor
0.1
557
Tumor
0.1
881
Tumor
0.1
975
Tumor
0.1
817
Tumor
0.1
665
Tumor
0.1
925
Tumor
0.0
433
Tumor
0.0
261
Tumor
0.0
635
Tumor
0.0
916
Normal
0.0
536
Normal
0.0
415
Tumor
0.0
978
Normal
0.0
1045
Tumor
0.0
297
Tumor
0.0
383
Tumor
0.0
227
Tumor
0.0
553
Tumor
-0.1
524
Normal
-0.1
267
Tumor
-0.1
467
Tumor
-0.1
937
Tumor
-0.1
471
Tumor
-0.1
721
Tumor
-0.1
1015
Tumor
-0.1
533
Tumor
-0.1
478
Normal
-0.1
915
Tumor
-0.2
981
Tumor
-0.2
1025
Tumor
-0.2
455
Tumor
-0.2
461
Tumor
-0.2
393
Tumor
-0.2
127
Tumor
-0.2
185
Tumor
-0.2
538
Normal
-0.2
434
Normal
-0.2
563
Tumor
-0.2
715
Tumor
-0.3
443
Tumor
-0.3
1014
Normal
-0.3
481
Tumor
-0.3
444
Normal
-0.3
785
Tumor
-0.3
224
Normal
-0.3
867
Tumor
-0.3
1043
Tumor
-0.4
451
Tumor
-0.4
427
Tumor
-0.4
984
Normal
-0.4
217
Tumor
-0.4
615
Tumor
-0.4
187
Tumor
-0.4
958
Normal
-0.4
423
Tumor
-0.4
1041
Tumor
-0.4
913
Tumor
-0.4
911
Tumor
-0.4
477
Tumor
-0.5
212
Normal
-0.5
361
Tumor
-0.5
863
Tumor
-0.5
745
Tumor
-0.5
137
Tumor
-0.5
617
Tumor
-0.5
878
Normal
-0.5
976
Normal
-0.5
516
Normal
-0.5
135
Tumor
-0.5
284
Normal
-0.5
364
Normal
-0.5
327
Tumor
-0.6
1044
Normal
-0.6
852
Normal
-0.6
195
Tumor
-0.6
513
Tumor
-0.6
515
Tumor
-0.6
926
Normal
-0.6
488
Normal
-0.6
421
Tumor
-0.6
268
Normal
-0.6
777
Tumor
-0.6
328
Normal
-0.6
147
Tumor
-0.6
554
Normal
-0.6
954
Normal
-0.6
716
Normal
-0.6
113
Tumor
-0.6
884
Normal
-0.6
714
Normal
-0.6
353
Tumor
-0.7
874
Normal
-0.7
696
Normal
-0.7
744
Normal
-0.7
395
Tumor
-0.7
922
Normal
-0.7
918
Normal
-0.7
924
Normal
-0.7
938
Normal
-0.7
944
Normal
-0.7
271
Tumor
-0.7
686
Normal
-0.7
494
Normal
-0.7
641
Tumor
-0.7
662
Normal
-0.7
416
Normal
-0.8
728
Normal
-0.8
192
Normal
-0.8
312
Normal
-0.8
1028
Normal
-0.8
384
Normal
-0.8
968
Normal
-0.8
964
Normal
-0.8
191
Tumor
-0.8
286
Normal
-0.8
914
Normal
-0.8
1016
Normal
-0.8
982
Normal
-0.8
221
Tumor
-0.8
956
Normal
-0.8
816
Normal
-0.8
952
Normal
-0.8
858
Normal
-0.8
546
Normal
-0.8
412
Normal
-0.8
528
Normal
-0.8
228
Normal
-0.8
352
Normal
-0.8
484
Normal
-0.8
526
Normal
-0.8
145
Tumor
-0.8
386
Normal
-0.8
778
Normal
-0.9
955
Tumor
-0.9
672
Normal
-0.9
188
Normal
-0.9
738
Normal
-0.9
534
Normal
-0.9
448
Normal
-0.9
466
Normal
-0.9
514
Normal
-0.9
518
Normal
-0.9
365
Tumor
-0.9
868
Normal
-0.9
862
Normal
-0.9
124
Normal
-0.9
723
Tumor
-0.9
664
Normal
-0.9
866
Normal
-0.9
356
Normal
-0.9
698
Normal
-0.9
666
Normal
-0.9
824
Normal
-0.9
332
Normal
-0.9
722
Normal
-0.9
262
Normal
-1.0
468
Normal
-1.0
1046
Normal
-1.0
572
Normal
-1.0
1026
Normal
-1.0
472
Normal
-1.0
912
Normal
-1.0
882
Normal
-1.0
314
Normal
-1.0
126
Normal
-1.0
818
Normal
-1.0
864
Normal
-1.0
272
Normal
-1.0
474
Normal
-1.1
114
Normal
-1.1
142
Normal
-1.1
558
Normal
-1.1
214
Normal
-1.1
1042
Normal
-1.1
1032
Normal
-1.1
358
Normal
-1.1
396
Normal
-1.1
627
Tumor
-1.1
278
Normal
-1.1
392
Normal
-1.1
366
Normal
-1.1
756
Normal
-1.1
362
Normal
-1.1
368
Normal
-1.1
456
Normal
-1.2
786
Normal
-1.2
388
Normal
-1.2
574
Normal
-1.2
742
Normal
-1.2
482
Normal
-1.2
342
Normal
-1.2
298
Normal
-1.2
344
Normal
-1.2
424
Normal
-1.2
354
Normal
-1.2
146
Normal
-1.2
464
Normal
-1.2
436
Normal
-1.2
394
Normal
-1.3
232
Normal
-1.3
618
Normal
-1.3
642
Normal
-1.3
648
Normal
-1.3
162
Normal
-1.3
258
Normal
-1.3
138
Normal
-1.3
628
Normal
-1.3
564
Normal
-1.3
128
Normal
-1.3
218
Normal
-1.3
568
Normal
-1.3
446
Normal
-1.3
462
Normal
-1.4
428
Normal
-1.4
746
Normal
-1.4
196
Normal
-1.4
111
Normal
-1.4
376
Normal
-1.4
432
Normal
-1.4
422
Normal
-1.4
1022
Normal
-1.4
616
Normal
-1.5
148
Normal
-1.5
426
Normal
-1.5
172
Normal
-1.5
136
Normal
-1.6
636
Normal
-1.6
186
Normal
-1.7
414
Normal
-1.8
132
Normal
-1.8
222
Normal
-1.8
452
Normal
-1.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
