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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCOR3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
20.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
15.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
13.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
12.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
11.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
10.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
8.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
8.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
7.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
6.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
5.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
4.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
4.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
4.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
3.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
3.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
3.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
3.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RCOR3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.6
Number of samples
231
Samples
Sample
Description
TPM
DO45251
0 years, female, NA, stage:2, alive, 900 days
33.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
27.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
27.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
24.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
24.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
22.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
20.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
16.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
16.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
15.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
15.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
14.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
14.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
14.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
7.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
6.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
5.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
4.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
2.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.6
131
Tumor
1.3
951
Tumor
1.2
743
Tumor
1.2
877
Tumor
1.1
957
Tumor
1.0
1013
Tumor
0.9
411
Tumor
0.9
523
Tumor
0.9
385
Tumor
0.9
351
Tumor
0.8
517
Tumor
0.8
737
Tumor
0.8
331
Tumor
0.8
1031
Tumor
0.8
545
Tumor
0.8
881
Tumor
0.7
355
Tumor
0.7
473
Tumor
0.7
865
Tumor
0.7
695
Tumor
0.7
463
Tumor
0.7
271
Tumor
0.7
425
Tumor
0.7
977
Tumor
0.7
211
Tumor
0.6
357
Tumor
0.6
553
Tumor
0.6
413
Tumor
0.6
671
Tumor
0.6
921
Tumor
0.6
497
Tumor
0.6
724
Normal
0.6
527
Tumor
0.6
983
Tumor
0.6
647
Tumor
0.5
445
Tumor
0.5
1021
Tumor
0.5
171
Tumor
0.5
491
Tumor
0.5
817
Tumor
0.5
813
Tumor
0.5
277
Tumor
0.5
161
Tumor
0.5
447
Tumor
0.5
685
Tumor
0.5
533
Tumor
0.5
661
Tumor
0.5
923
Tumor
0.4
975
Tumor
0.4
727
Tumor
0.4
285
Tumor
0.4
313
Tumor
0.4
917
Tumor
0.4
863
Tumor
0.4
883
Tumor
0.4
123
Tumor
0.4
1025
Tumor
0.4
343
Tumor
0.4
953
Tumor
0.4
443
Tumor
0.4
493
Tumor
0.3
391
Tumor
0.3
777
Tumor
0.3
665
Tumor
0.3
814
Normal
0.3
537
Tumor
0.3
567
Tumor
0.3
393
Tumor
0.3
367
Tumor
0.3
483
Tumor
0.3
967
Tumor
0.3
433
Tumor
0.3
963
Tumor
0.3
297
Tumor
0.3
471
Tumor
0.3
431
Tumor
0.3
467
Tumor
0.3
231
Tumor
0.3
715
Tumor
0.2
943
Tumor
0.2
487
Tumor
0.2
221
Tumor
0.2
741
Tumor
0.2
465
Tumor
0.2
515
Tumor
0.2
1041
Tumor
0.2
911
Tumor
0.2
573
Tumor
0.2
283
Tumor
0.2
125
Tumor
0.2
375
Tumor
0.2
387
Tumor
0.2
557
Tumor
0.2
525
Tumor
0.2
477
Tumor
0.2
823
Tumor
0.1
455
Tumor
0.1
571
Tumor
0.1
663
Tumor
0.1
536
Normal
0.1
1043
Tumor
0.1
524
Normal
0.1
311
Tumor
0.1
127
Tumor
0.1
481
Tumor
0.1
261
Tumor
0.1
478
Normal
0.1
535
Tumor
0.1
785
Tumor
0.1
341
Tumor
0.1
444
Normal
0.1
713
Tumor
0.1
884
Normal
0.1
217
Tumor
0.1
867
Tumor
0.1
641
Tumor
0.1
354
Normal
0.0
873
Tumor
0.0
635
Tumor
0.0
192
Normal
0.0
1027
Tumor
0.0
332
Normal
0.0
213
Tumor
0.0
461
Tumor
0.0
913
Tumor
0.0
358
Normal
0.0
147
Tumor
0.0
384
Normal
0.0
428
Normal
0.0
268
Normal
0.0
721
Tumor
0.0
185
Tumor
0.0
361
Tumor
0.0
498
Normal
0.0
135
Tumor
0.0
912
Normal
0.0
878
Normal
0.0
916
Normal
0.0
112
Tumor
0.0
352
Normal
0.0
141
Tumor
0.0
427
Tumor
0.0
492
Normal
0.0
484
Normal
0.0
882
Normal
0.0
451
Tumor
0.0
363
Tumor
0.0
415
Tumor
0.0
272
Normal
0.0
666
Normal
0.0
938
Normal
0.0
861
Tumor
0.0
1044
Normal
0.0
196
Normal
-0.1
1045
Tumor
-0.1
966
Normal
-0.1
686
Normal
-0.1
563
Tumor
-0.1
926
Normal
-0.1
528
Normal
-0.1
1042
Normal
-0.1
554
Normal
-0.1
818
Normal
-0.1
513
Tumor
-0.1
546
Normal
-0.1
958
Normal
-0.1
257
Tumor
-0.1
534
Normal
-0.1
744
Normal
-0.1
227
Tumor
-0.1
952
Normal
-0.1
1046
Normal
-0.1
574
Normal
-0.1
538
Normal
-0.1
516
Normal
-0.1
191
Tumor
-0.1
448
Normal
-0.1
526
Normal
-0.1
456
Normal
-0.1
342
Normal
-0.1
852
Normal
-0.1
968
Normal
-0.1
1015
Tumor
-0.1
672
Normal
-0.1
722
Normal
-0.1
866
Normal
-0.1
312
Normal
-0.1
414
Normal
-0.1
362
Normal
-0.1
915
Tumor
-0.1
922
Normal
-0.1
435
Tumor
-0.1
472
Normal
-0.1
964
Normal
-0.1
514
Normal
-0.1
488
Normal
-0.1
314
Normal
-0.1
664
Normal
-0.1
1032
Normal
-0.1
918
Normal
-0.1
954
Normal
-0.1
858
Normal
-0.1
572
Normal
-0.1
756
Normal
-0.1
815
Tumor
-0.1
212
Normal
-0.1
424
Normal
-0.1
298
Normal
-0.1
558
Normal
-0.1
434
Normal
-0.1
412
Normal
-0.1
924
Normal
-0.1
862
Normal
-0.1
714
Normal
-0.1
187
Tumor
-0.1
851
Tumor
-0.1
224
Normal
-0.1
984
Normal
-0.1
976
Normal
-0.1
914
Normal
-0.1
146
Normal
-0.2
778
Normal
-0.2
376
Normal
-0.2
755
Tumor
-0.2
466
Normal
-0.2
716
Normal
-0.2
365
Tumor
-0.2
786
Normal
-0.2
728
Normal
-0.2
284
Normal
-0.2
723
Tumor
-0.2
648
Normal
-0.2
698
Normal
-0.2
1014
Normal
-0.2
742
Normal
-0.2
353
Tumor
-0.2
857
Tumor
-0.2
955
Tumor
-0.2
518
Normal
-0.2
218
Normal
-0.2
267
Tumor
-0.2
464
Normal
-0.2
426
Normal
-0.2
494
Normal
-0.2
978
Normal
-0.2
366
Normal
-0.2
262
Normal
-0.2
383
Tumor
-0.2
868
Normal
-0.2
222
Normal
-0.2
662
Normal
-0.2
474
Normal
-0.2
1016
Normal
-0.2
395
Tumor
-0.2
696
Normal
-0.2
468
Normal
-0.2
386
Normal
-0.2
142
Normal
-0.2
944
Normal
-0.2
392
Normal
-0.2
697
Tumor
-0.2
364
Normal
-0.2
278
Normal
-0.2
328
Normal
-0.2
423
Tumor
-0.2
126
Normal
-0.2
422
Normal
-0.2
162
Normal
-0.2
394
Normal
-0.2
874
Normal
-0.2
564
Normal
-0.2
482
Normal
-0.2
864
Normal
-0.2
356
Normal
-0.2
195
Tumor
-0.2
1022
Normal
-0.2
956
Normal
-0.2
568
Normal
-0.2
188
Normal
-0.2
388
Normal
-0.3
368
Normal
-0.3
816
Normal
-0.3
421
Tumor
-0.3
738
Normal
-0.3
824
Normal
-0.3
1028
Normal
-0.3
344
Normal
-0.3
462
Normal
-0.3
396
Normal
-0.3
982
Normal
-0.3
214
Normal
-0.3
925
Tumor
-0.3
128
Normal
-0.3
228
Normal
-0.3
286
Normal
-0.3
615
Tumor
-0.3
627
Tumor
-0.3
148
Normal
-0.3
416
Normal
-0.3
745
Tumor
-0.3
432
Normal
-0.3
628
Normal
-0.3
186
Normal
-0.3
136
Normal
-0.3
452
Normal
-0.3
636
Normal
-0.4
138
Normal
-0.4
111
Normal
-0.4
446
Normal
-0.4
981
Tumor
-0.4
232
Normal
-0.4
616
Normal
-0.4
1026
Normal
-0.4
746
Normal
-0.4
223
Tumor
-0.4
124
Normal
-0.4
258
Normal
-0.4
132
Normal
-0.4
436
Normal
-0.4
618
Normal
-0.4
113
Tumor
-0.4
137
Tumor
-0.4
327
Tumor
-0.4
145
Tumor
-0.4
172
Normal
-0.4
114
Normal
-0.4
937
Tumor
-0.5
642
Normal
-0.5
617
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
